BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2286.p (463 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775287.1| cysteinyl-tRNA synthetase [Herbaspirillum se... 895 0.0 ref|YP_001353798.1| cysteinyl-tRNA synthetase [Janthinobacterium... 765 0.0 ref|YP_001099586.1| cysteinyl-tRNA synthetase [Herminiimonas ars... 750 0.0 gb|AEG69500.1| cysteinyl-trna synthetase (cysteine--trna ligase)... 741 0.0 ref|ZP_00945249.1| Cysteinyl-tRNA synthetase [Ralstonia solanace... 727 0.0 >ref|YP_003775287.1| cysteinyl-tRNA synthetase [Herbaspirillum seropedicae SmR1] gb|ADJ63379.1| cysteinyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1] Length = 463 Score = 895 bits (2313), Expect = 0.0, Method: Composition-based stats. Identities = 444/463 (95%), Positives = 452/463 (97%) Query: 1 MSELKIYNTLARDKQTFTPIEPGKVRLYVCGMTVYDYCHIGHARVLVVFDMVQRWLRASG 60 MSELKIYNTLARDKQTF+PIEPGKVRLYVCGMTVYDYCHIGHARVLVVFDMVQRWLRASG Sbjct: 1 MSELKIYNTLARDKQTFSPIEPGKVRLYVCGMTVYDYCHIGHARVLVVFDMVQRWLRASG 60 Query: 61 YAVTYVRNITDIDDKIIHRAAENGETIAQLTNRFIDAMNEDAAALGVQRPDHEPRATKYV 120 Y VTYVRNITDIDDKII RA ENGETIAQLTNRFIDAMNEDAAALGVQRPDHEPRAT+YV Sbjct: 61 YEVTYVRNITDIDDKIIKRAVENGETIAQLTNRFIDAMNEDAAALGVQRPDHEPRATQYV 120 Query: 121 PKMLDLIGKLEKNGLAYKASDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP 180 P+MLDLIGKLEKNGLAYKASDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP Sbjct: 121 PQMLDLIGKLEKNGLAYKASDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP 180 Query: 181 LDFVLWKAAKPSEPDEAKWDSPWGCGRPGWHIECSAMSSDLLGDHFDIHGGGQDLQFPHH 240 LDFVLWKAAKP+EPDEAKWDSPWGCGRPGWHIECSAMSSDLLGDHFDIHGGGQDLQFPHH Sbjct: 181 LDFVLWKAAKPAEPDEAKWDSPWGCGRPGWHIECSAMSSDLLGDHFDIHGGGQDLQFPHH 240 Query: 241 ENEIAQSEGAHQHTFVNYWMHNGFVRIDNEKMSKSLGNFFTIRDVLKKYDPEVLRFFILR 300 ENEIAQSEGAHQHTFVNYWMHNGFVRIDNEKMSKSLGNFFTIRDVLKKYDPEVLRFFILR Sbjct: 241 ENEIAQSEGAHQHTFVNYWMHNGFVRIDNEKMSKSLGNFFTIRDVLKKYDPEVLRFFILR 300 Query: 301 AHYRSPLNYSDAHLDDARQALTRLYTALKDVPPQAGDLVADEAHAQRFTEALNDDFNTPV 360 AHYRSPLNYSDAHLDDARQALTRLYTALKDVPPQAG LVADEAHA R +ALNDDFNTPV Sbjct: 301 AHYRSPLNYSDAHLDDARQALTRLYTALKDVPPQAGGLVADEAHAVRLADALNDDFNTPV 360 Query: 361 AISVLFELANEVNRDRSPAQARQLKALAGILGLLQREPGEYLKGGVAAADGLGEAEIEAL 420 AI+VLFELANEVNR RSP QARQLKALAGILGLLQREPGEYLKGGVAAA+GLGEAEIEAL Sbjct: 361 AIAVLFELANEVNRSRSPVQARQLKALAGILGLLQREPGEYLKGGVAAAEGLGEAEIEAL 420 Query: 421 IEARKAAKAGKNFAEADRVRAELTAAGIILEDKPGGLTEWRRA 463 I ARKAAKAGKNFAEADR+RAELT AGIILEDKPGGLTEWRRA Sbjct: 421 IAARKAAKAGKNFAEADRIRAELTEAGIILEDKPGGLTEWRRA 463 >ref|YP_001353798.1| cysteinyl-tRNA synthetase [Janthinobacterium sp. Marseille] sp|A6SZV1|SYC_JANMA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gb|ABR88513.1| Cysteinyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 464 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 369/464 (79%), Positives = 402/464 (86%), Gaps = 1/464 (0%) Query: 1 MSELKIYNTLARDKQTFTPIEPGKVRLYVCGMTVYDYCHIGHARVLVVFDMVQRWLRASG 60 MS LKIYNTLAR+KQ FTPIEPGKVR+YVCGMTVYDYCHIGHARV+VVFD+VQRWLRASG Sbjct: 1 MSALKIYNTLAREKQPFTPIEPGKVRMYVCGMTVYDYCHIGHARVMVVFDLVQRWLRASG 60 Query: 61 YAVTYVRNITDIDDKIIHRAAENGETIAQLTNRFIDAMNEDAAALGVQRPDHEPRATKYV 120 Y V YVRNITDIDDKII RAAENGE+I+ LT RFIDAM+EDAAALGVQ+PDHEPRAT YV Sbjct: 61 YEVNYVRNITDIDDKIIKRAAENGESISALTQRFIDAMDEDAAALGVQKPDHEPRATNYV 120 Query: 121 PKMLDLIGKLEKNGLAYKASDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP 180 P+ML LI LE+NGLAYK+SDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP Sbjct: 121 PQMLGLIEALERNGLAYKSSDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP 180 Query: 181 LDFVLWKAAKPSEPDEAKWDSPWGCGRPGWHIECSAMSSDLLGDHFDIHGGGQDLQFPHH 240 LDFVLWK++K +EPDE KW S WG GRPGWHIECSAM+ +LLG FDIHGGG DLQFPHH Sbjct: 181 LDFVLWKSSKEAEPDEVKWASKWGSGRPGWHIECSAMACELLGQQFDIHGGGADLQFPHH 240 Query: 241 ENEIAQSEGAHQHTFVNYWMHNGFVRIDNEKMSKSLGNFFTIRDVLKKYDPEVLRFFILR 300 ENEIAQSEGA QHTFVNYWMHNGFVR+DNEKMSKSLGNFFTIR+VL KYD EV+RFFILR Sbjct: 241 ENEIAQSEGASQHTFVNYWMHNGFVRVDNEKMSKSLGNFFTIREVLAKYDSEVVRFFILR 300 Query: 301 AHYRSPLNYSDAHLDDARQALTRLYTALKDVPPQAGDLVADEAHAQRFTEALNDDFNTPV 360 AHYRS LNYSDAHLDDAR ALTR+YTALK V P L EAHA RF EA+NDDFNTP+ Sbjct: 301 AHYRSQLNYSDAHLDDARNALTRMYTALKGVAPDQAALDMTEAHALRFAEAMNDDFNTPL 360 Query: 361 AISVLFELANEVNRDRSPAQARQLKALAGILGLLQREPGEYLKGGVA-AADGLGEAEIEA 419 A++VLFELANE+N+ +SPA ARQL LAGI+GLLQR ++L G+A DG E + Sbjct: 361 AVAVLFELANEINKTKSPALARQLVGLAGIVGLLQRPAQQFLHAGLANGEDGEMETFVVE 420 Query: 420 LIEARKAAKAGKNFAEADRVRAELTAAGIILEDKPGGLTEWRRA 463 IEAR AK KNFAEADR+RAEL GIILEDKPGGLTEWRRA Sbjct: 421 QIEARVNAKKAKNFAEADRIRAELLEKGIILEDKPGGLTEWRRA 464 >ref|YP_001099586.1| cysteinyl-tRNA synthetase [Herminiimonas arsenicoxydans] sp|A4G4M2|SYC_HERAR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS emb|CAL61459.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) [Herminiimonas arsenicoxydans] Length = 462 Score = 750 bits (1936), Expect = 0.0, Method: Composition-based stats. Identities = 365/463 (78%), Positives = 403/463 (87%), Gaps = 1/463 (0%) Query: 1 MSELKIYNTLARDKQTFTPIEPGKVRLYVCGMTVYDYCHIGHARVLVVFDMVQRWLRASG 60 MS LKIYNTLAR+KQ FTPI+PGKVR+YVCGMTVYDYCHIGHARV+VVFD+VQRWLRASG Sbjct: 1 MSALKIYNTLAREKQLFTPIDPGKVRMYVCGMTVYDYCHIGHARVMVVFDLVQRWLRASG 60 Query: 61 YAVTYVRNITDIDDKIIHRAAENGETIAQLTNRFIDAMNEDAAALGVQRPDHEPRATKYV 120 + VTYVRNITDIDDKII RAAENGETI+QLT RFIDAM+EDAAALGVQ+PDHEPRAT YV Sbjct: 61 FDVTYVRNITDIDDKIIKRAAENGETISQLTQRFIDAMDEDAAALGVQKPDHEPRATNYV 120 Query: 121 PKMLDLIGKLEKNGLAYKASDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP 180 P+ML LI LE+NGLAYKA+DGDVNYSVRDF GYGKLSGKSLDDLRAGERVDVNTGK DP Sbjct: 121 PQMLGLIDMLERNGLAYKAADGDVNYSVRDFAGYGKLSGKSLDDLRAGERVDVNTGKHDP 180 Query: 181 LDFVLWKAAKPSEPDEAKWDSPWGCGRPGWHIECSAMSSDLLGDHFDIHGGGQDLQFPHH 240 LDFVLWK++K +EP+E KW S WG GRPGWHIECSAM+ +LLG+ FDIHGGG DLQFPHH Sbjct: 181 LDFVLWKSSKENEPEEVKWSSKWGSGRPGWHIECSAMACELLGEQFDIHGGGADLQFPHH 240 Query: 241 ENEIAQSEGAHQHTFVNYWMHNGFVRIDNEKMSKSLGNFFTIRDVLKKYDPEVLRFFILR 300 ENEIAQSEGA HTFVNYWMHNGFVR+DNEKMSKSLGNFFTIR+VL+K+D EV+RFFILR Sbjct: 241 ENEIAQSEGASGHTFVNYWMHNGFVRVDNEKMSKSLGNFFTIREVLEKFDAEVVRFFILR 300 Query: 301 AHYRSPLNYSDAHLDDARQALTRLYTALKDVPPQAGDLVADEAHAQRFTEALNDDFNTPV 360 AHYRS LNYSDAHLDDAR ALTR+YTALKDV P L EAHA RF +A+NDDFNTP+ Sbjct: 301 AHYRSQLNYSDAHLDDARNALTRMYTALKDVAPDHLPLDMTEAHAVRFIDAMNDDFNTPL 360 Query: 361 AISVLFELANEVNRDRSPAQARQLKALAGILGLLQREPGEYLKGGVAAADGLGEAEIEAL 420 AI+VLFELANE+NR++SP ARQL LAGI+GLLQR ++L G+A AD + E I Sbjct: 361 AIAVLFELANEINREKSPVLARQLIGLAGIVGLLQRPAQQFLHAGLAGADEM-ETLIIGQ 419 Query: 421 IEARKAAKAGKNFAEADRVRAELTAAGIILEDKPGGLTEWRRA 463 I AR AK KNFAEADR+RA L GIILEDKPGGLTEWRRA Sbjct: 420 IAARADAKKAKNFAEADRIRAALLEKGIILEDKPGGLTEWRRA 462 >gb|AEG69500.1| cysteinyl-trna synthetase (cysteine--trna ligase)(cysrs) protein [Ralstonia solanacearum Po82] Length = 465 Score = 741 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 358/465 (76%), Positives = 406/465 (87%), Gaps = 2/465 (0%) Query: 1 MSELKIYNTLARDKQTFTPIEPGKVRLYVCGMTVYDYCHIGHARVLVVFDMVQRWLRASG 60 M LKIYNTLAR+KQTF PIEPG+VR+YVCGMTVYDYCH+GHARV+VVFDMVQRWLRAS Sbjct: 1 MESLKIYNTLAREKQTFVPIEPGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRASA 60 Query: 61 YAVTYVRNITDIDDKIIHRAAENGETIAQLTNRFIDAMNEDAAALGVQRPDHEPRATKYV 120 Y VTYVRNITDIDDKII RA ENGETI LT+RFI AM+EDA ALGVQRPDHEPRAT+YV Sbjct: 61 YDVTYVRNITDIDDKIIRRAVENGETIGALTDRFIAAMHEDADALGVQRPDHEPRATEYV 120 Query: 121 PKMLDLIGKLEKNGLAYKASDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP 180 P+ML +IGKL+ NGLAY+A+DGDVNY+VR FPGYGKLSGKSL+DLRAGERV N K+DP Sbjct: 121 PQMLSMIGKLQANGLAYQAADGDVNYAVRRFPGYGKLSGKSLEDLRAGERVAANDAKQDP 180 Query: 181 LDFVLWKAAKPSEPDEAKWDSPWGCGRPGWHIECSAMSSDLLGDHFDIHGGGQDLQFPHH 240 LDFVLWK+AK EP E++W SPWG GRPGWHIECSAMS +LLG HFD+HGGG DLQFPHH Sbjct: 181 LDFVLWKSAKADEPAESRWTSPWGEGRPGWHIECSAMSCELLGTHFDLHGGGADLQFPHH 240 Query: 241 ENEIAQSEGAHQHTFVNYWMHNGFVRIDNEKMSKSLGNFFTIRDVLKKYDPEVLRFFILR 300 ENEIAQ+EGA+ TFVN WMHNGFVR+++EKMSKSLGNFFTIR+VLK YDPEV+RFFILR Sbjct: 241 ENEIAQAEGANGSTFVNTWMHNGFVRVNDEKMSKSLGNFFTIREVLKVYDPEVVRFFILR 300 Query: 301 AHYRSPLNYSDAHLDDARQALTRLYTALKDVPPQAGDLVA-DEAHAQRFTEALNDDFNTP 359 +HYRS LNYSDAHLDDAR ALTRLYTALKDVP +AG E H QRF EA+NDDFNTP Sbjct: 301 SHYRSDLNYSDAHLDDARHALTRLYTALKDVPAEAGAQPDWSEPHGQRFREAMNDDFNTP 360 Query: 360 VAISVLFELANEVNRDRSPAQARQLKALAGILGLLQREPGEYLKGGV-AAADGLGEAEIE 418 VA++VLFELA+EVN+ RSPA A QL AL G++GLL R+P +L+GGV AAADGL AE+E Sbjct: 361 VAMAVLFELASEVNKTRSPALASQLAALGGVMGLLGRDPHAFLQGGVGAAADGLDTAEVE 420 Query: 419 ALIEARKAAKAGKNFAEADRVRAELTAAGIILEDKPGGLTEWRRA 463 A IEAR+ AKA ++FA AD +RA+L AAGI+LEDKPGG+TEWRRA Sbjct: 421 ARIEARRVAKAARDFARADGIRADLLAAGIVLEDKPGGVTEWRRA 465 >ref|ZP_00945249.1| Cysteinyl-tRNA synthetase [Ralstonia solanacearum UW551] ref|YP_002259883.1| cysteinyl-trna synthetase (cysteine--trna ligase)(cysrs) protein [Ralstonia solanacearum IPO1609] gb|EAP72216.1| Cysteinyl-tRNA synthetase [Ralstonia solanacearum UW551] emb|CAQ61816.1| cysteinyl-trna synthetase (cysteine--trna ligase)(cysrs) protein [Ralstonia solanacearum IPO1609] Length = 465 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 356/465 (76%), Positives = 405/465 (87%), Gaps = 2/465 (0%) Query: 1 MSELKIYNTLARDKQTFTPIEPGKVRLYVCGMTVYDYCHIGHARVLVVFDMVQRWLRASG 60 M LKIYNTLAR+KQTF PIEPG+VR+YVCGMTVYDYCH+GHARV+VVFDMVQRWLRAS Sbjct: 1 MESLKIYNTLAREKQTFVPIEPGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRASA 60 Query: 61 YAVTYVRNITDIDDKIIHRAAENGETIAQLTNRFIDAMNEDAAALGVQRPDHEPRATKYV 120 Y VTYVRNITDIDDKII RA ENGETI LT+RFI AM+EDA ALGVQRPDHEPRAT+YV Sbjct: 61 YDVTYVRNITDIDDKIIKRAVENGETIGALTDRFIAAMHEDADALGVQRPDHEPRATEYV 120 Query: 121 PKMLDLIGKLEKNGLAYKASDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP 180 P+ML +IGKL+ NGLAY+A+DGDVNY+VR FPGYGKLSGKSL+DLRAGERV N K+DP Sbjct: 121 PQMLSMIGKLQANGLAYQAADGDVNYAVRKFPGYGKLSGKSLEDLRAGERVAANDAKQDP 180 Query: 181 LDFVLWKAAKPSEPDEAKWDSPWGCGRPGWHIECSAMSSDLLGDHFDIHGGGQDLQFPHH 240 LDFVLWK+AK EP E++W SPWG GRPGWHIECSAMS +LLG HFD+HGGG DLQFPHH Sbjct: 181 LDFVLWKSAKADEPAESRWTSPWGEGRPGWHIECSAMSCELLGTHFDLHGGGADLQFPHH 240 Query: 241 ENEIAQSEGAHQHTFVNYWMHNGFVRIDNEKMSKSLGNFFTIRDVLKKYDPEVLRFFILR 300 ENEIAQ+EGA+ +TFVN WMHNGFVR+++EKMSKSLGNFFTIR+VLK YDPEV+RFFILR Sbjct: 241 ENEIAQAEGANGNTFVNTWMHNGFVRVNDEKMSKSLGNFFTIREVLKVYDPEVVRFFILR 300 Query: 301 AHYRSPLNYSDAHLDDARQALTRLYTALKDVPPQAGDLVA-DEAHAQRFTEALNDDFNTP 359 +HYRS LNYSDAHLDDAR ALTRLYTALKDVP G E+H QRF EA+NDDFNTP Sbjct: 301 SHYRSDLNYSDAHLDDARHALTRLYTALKDVPAAVGAKPDWSESHGQRFREAMNDDFNTP 360 Query: 360 VAISVLFELANEVNRDRSPAQARQLKALAGILGLLQREPGEYLKGGV-AAADGLGEAEIE 418 VA++VLFELA+EVN+ RSPA QL AL G++GLL R+P +L+GGV AAADGL AE+E Sbjct: 361 VAMAVLFELASEVNKTRSPALVNQLAALGGVMGLLGRDPHAFLQGGVGAAADGLDAAEVE 420 Query: 419 ALIEARKAAKAGKNFAEADRVRAELTAAGIILEDKPGGLTEWRRA 463 A IEAR+ AKA ++FA AD +RA+L AAGI+LEDKPGG+TEWRRA Sbjct: 421 ARIEARRVAKAERDFARADGIRADLLAAGIVLEDKPGGVTEWRRA 465