BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2279.p (245 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775280.1| tRNA/rRNA methyltransferase [Herbaspirillum ... 445 e-123 ref|YP_004752996.1| putative tRNA/rRNA methyltransferase [Collim... 395 e-108 ref|YP_001353804.1| RNA methyltransferase [Janthinobacterium sp.... 389 e-106 ref|YP_001099579.1| tRNA (guanosine-2'-O-)-methyltransferase [He... 389 e-106 ref|ZP_08276137.1| 23S rRNA (guanosine-2'-O-) -methyltransferase... 385 e-105 >ref|YP_003775280.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ63372.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 237/245 (96%), Positives = 241/245 (98%) Query: 1 MKSKMIFGFHAVTSRIRHEASSVEELYVDADRNDARMRDLLHAAKEAGVRIIQADDQRLA 60 MKSKMIFGFHAVTSRIRHEASSV+E+YVDA+R D RM DLLHAAKEA VRIIQADDQRLA Sbjct: 1 MKSKMIFGFHAVTSRIRHEASSVDEIYVDAERRDRRMLDLLHAAKEANVRIIQADDQRLA 60 Query: 61 AMVGTRRHQGVVAKAAALSLARTLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAG 120 AMVGTRRHQGVVAKAAALSLARTLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAG Sbjct: 61 AMVGTRRHQGVVAKAAALSLARTLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAG 120 Query: 121 AHAVIAPKDRAVGLNATAMKVSSGASDTVPYITVTNLARTMRDLKERGVWIIGTTDDAEK 180 AHAVIAPKDRAVGLNATAMKVSSGASDTVPYITVTNLARTMRDLKERGVWIIGT+DDAEK Sbjct: 121 AHAVIAPKDRAVGLNATAMKVSSGASDTVPYITVTNLARTMRDLKERGVWIIGTSDDAEK 180 Query: 181 GLYEGDFTGPTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARR 240 GLYEGDFTGPTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARR Sbjct: 181 GLYEGDFTGPTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARR 240 Query: 241 QRLPK 245 QRLPK Sbjct: 241 QRLPK 245 >ref|YP_004752996.1| putative tRNA/rRNA methyltransferase [Collimonas fungivorans Ter331] gb|AEK62173.1| putative tRNA/rRNA methyltransferase [Collimonas fungivorans Ter331] Length = 247 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 204/245 (83%), Positives = 226/245 (92%) Query: 1 MKSKMIFGFHAVTSRIRHEASSVEELYVDADRNDARMRDLLHAAKEAGVRIIQADDQRLA 60 MKSKMIFGFHAVT+R+RHEASSVEE+YVDA R D RM++LL+AAK GVR+I DD RL+ Sbjct: 1 MKSKMIFGFHAVTARLRHEASSVEEIYVDAGRVDRRMQELLNAAKAVGVRVIPVDDARLS 60 Query: 61 AMVGTRRHQGVVAKAAALSLARTLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAG 120 +VGTRRHQGVVAKA LSLAR LDELLDA+VGPPLLL+LDGITDPHNLGACLRVADGAG Sbjct: 61 NIVGTRRHQGVVAKAGELSLARNLDELLDAIVGPPLLLVLDGITDPHNLGACLRVADGAG 120 Query: 121 AHAVIAPKDRAVGLNATAMKVSSGASDTVPYITVTNLARTMRDLKERGVWIIGTTDDAEK 180 AHAVIAPKDRAVGLNATA KV+SGA++TVPYITVTNLART+R+LKER +W+IGT++D EK Sbjct: 121 AHAVIAPKDRAVGLNATAAKVASGAAETVPYITVTNLARTLRELKEREIWLIGTSEDGEK 180 Query: 181 GLYEGDFTGPTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARR 240 GLYE DF+GP ALVMGSEGEGMRRLTRETCDVLVN+PMFGSVESLNVSVASGVCLYEARR Sbjct: 181 GLYEADFSGPAALVMGSEGEGMRRLTRETCDVLVNVPMFGSVESLNVSVASGVCLYEARR 240 Query: 241 QRLPK 245 QR K Sbjct: 241 QRTVK 245 >ref|YP_001353804.1| RNA methyltransferase [Janthinobacterium sp. Marseille] gb|ABR89784.1| RNA methyltransferase, TrmH family [Janthinobacterium sp. Marseille] Length = 247 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 204/243 (83%), Positives = 226/243 (93%) Query: 1 MKSKMIFGFHAVTSRIRHEASSVEELYVDADRNDARMRDLLHAAKEAGVRIIQADDQRLA 60 MKSKMIFGFHAVT+R+RHEASSVEE+Y+DA R+D RM+DL+ AA+ A VRII ADD RL+ Sbjct: 1 MKSKMIFGFHAVTARLRHEASSVEEIYIDAGRHDQRMKDLIRAAEGAKVRIIPADDARLS 60 Query: 61 AMVGTRRHQGVVAKAAALSLARTLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAG 120 ++VGTRRHQGVVAKA LSLAR LDELLDA+ GPPLLL+LDGITDPHNLGACLRVADGAG Sbjct: 61 SIVGTRRHQGVVAKAGELSLARNLDELLDAIEGPPLLLVLDGITDPHNLGACLRVADGAG 120 Query: 121 AHAVIAPKDRAVGLNATAMKVSSGASDTVPYITVTNLARTMRDLKERGVWIIGTTDDAEK 180 AHAVIAPKDRAVGLNATA KV+SGA+DTVPYITVTNLART+R+LKER + +IGTTDD+EK Sbjct: 121 AHAVIAPKDRAVGLNATAAKVASGAADTVPYITVTNLARTLRELKERDIMLIGTTDDSEK 180 Query: 181 GLYEGDFTGPTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARR 240 GLYE DF+GP ALVMGSEGEGMRRLTRETCDVLV IPMFGSVESLNVSVASGVCLYEARR Sbjct: 181 GLYEADFSGPAALVMGSEGEGMRRLTRETCDVLVGIPMFGSVESLNVSVASGVCLYEARR 240 Query: 241 QRL 243 QR+ Sbjct: 241 QRI 243 >ref|YP_001099579.1| tRNA (guanosine-2'-O-)-methyltransferase [Herminiimonas arsenicoxydans] emb|CAL61452.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Herminiimonas arsenicoxydans] Length = 247 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 203/243 (83%), Positives = 227/243 (93%) Query: 1 MKSKMIFGFHAVTSRIRHEASSVEELYVDADRNDARMRDLLHAAKEAGVRIIQADDQRLA 60 MKSKMIFGFHAVT+R+RHEASSVEE+Y+DA R+D RM+DL+ AA+ A VRII ADD RL+ Sbjct: 1 MKSKMIFGFHAVTARLRHEASSVEEIYIDASRHDQRMKDLIRAAEAAKVRIIAADDARLS 60 Query: 61 AMVGTRRHQGVVAKAAALSLARTLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAG 120 ++VGTRRHQGVVAKA LSLAR LDELLDA+ GPPLLL+LDGITDPHNLGACLRVADGAG Sbjct: 61 SIVGTRRHQGVVAKAGELSLARNLDELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAG 120 Query: 121 AHAVIAPKDRAVGLNATAMKVSSGASDTVPYITVTNLARTMRDLKERGVWIIGTTDDAEK 180 AHAVIAPKDRAVGLNATA KV+SGA+DTVPYITVTNLART+R+LKER + +IGTTDD+EK Sbjct: 121 AHAVIAPKDRAVGLNATAAKVASGAADTVPYITVTNLARTLRELKERDILLIGTTDDSEK 180 Query: 181 GLYEGDFTGPTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARR 240 GLYE DF+GP AL+MGSEGEGMRRLTRETCDVLV+IPMFGSVESLNVSVASGVCLYEARR Sbjct: 181 GLYEADFSGPAALIMGSEGEGMRRLTRETCDVLVSIPMFGSVESLNVSVASGVCLYEARR 240 Query: 241 QRL 243 QR+ Sbjct: 241 QRI 243 >ref|ZP_08276137.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Oxalobacteraceae bacterium IMCC9480] gb|EGF30394.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Oxalobacteraceae bacterium IMCC9480] Length = 242 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 196/241 (81%), Positives = 223/241 (92%) Query: 5 MIFGFHAVTSRIRHEASSVEELYVDADRNDARMRDLLHAAKEAGVRIIQADDQRLAAMVG 64 MIFGFHAVT+R+RHEAS+VEE+YVD R+D RM+D+L AA VR+IQADDQRL+ MVG Sbjct: 1 MIFGFHAVTARLRHEASTVEEIYVDTARHDQRMKDMLKAAAAVKVRVIQADDQRLSNMVG 60 Query: 65 TRRHQGVVAKAAALSLARTLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAGAHAV 124 TRRHQGVVAKA +SLAR LDELLDA+ GPPLLL+LDGITDPHNLGACLRVADGAGAHAV Sbjct: 61 TRRHQGVVAKAGEVSLARNLDELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAGAHAV 120 Query: 125 IAPKDRAVGLNATAMKVSSGASDTVPYITVTNLARTMRDLKERGVWIIGTTDDAEKGLYE 184 IAPKDRAVGLNATA KV+SGA+++VPYITVTNLART+RDLK+RG+W+IGTT+DAE+ LY+ Sbjct: 121 IAPKDRAVGLNATAAKVASGAAESVPYITVTNLARTLRDLKDRGIWLIGTTEDAEQTLYQ 180 Query: 185 GDFTGPTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARRQRLP 244 GDFTGPTAL+MGSEGEGMRRLT ETCD LV+IPMFG+VESLNVSVASGVCL+EARRQRL Sbjct: 181 GDFTGPTALIMGSEGEGMRRLTTETCDFLVHIPMFGAVESLNVSVASGVCLFEARRQRLV 240 Query: 245 K 245 K Sbjct: 241 K 241