BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2278.p (787 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775279.1| exoribonuclease RNAse R protein [Herbaspiril... 1397 0.0 ref|YP_004752997.1| ribonuclease R [Collimonas fungivorans Ter33... 1303 0.0 ref|YP_001353805.1| exoribonuclease RNAse R [Janthinobacterium s... 1233 0.0 emb|CAL61451.2| RNase R, 3'-5' exoribonuclease [Herminiimonas ar... 1231 0.0 ref|YP_001099578.1| RNase R, 3'-5' exoribonuclease [Herminiimona... 1221 0.0 >ref|YP_003775279.1| exoribonuclease RNAse R protein [Herbaspirillum seropedicae SmR1] gb|ADJ63371.1| exoribonuclease RNAse R protein [Herbaspirillum seropedicae SmR1] Length = 839 Score = 1397 bits (3616), Expect = 0.0, Method: Composition-based stats. Identities = 723/800 (90%), Positives = 746/800 (93%), Gaps = 15/800 (1%) Query: 1 MDGLTRRLNAMERDGQIKPDRAGNYKLTHSPDFILGRVSAHRDGFGFLLPDEGADDLFLP 60 MDGLTRRLNAMERDGQIKPDRAG+YKLTHSPDFILGRVS+HRDGFGFLLPD+G+DDLFLP Sbjct: 41 MDGLTRRLNAMERDGQIKPDRAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLP 100 Query: 61 EKEMQKVMHGDRVQARITGTDRRGRPEGTIVEVVERANTHVIGRLLNENGVWVVAPEDKR 120 EKEMQKVMHGDRVQARI GTDRRGRPEGTIVEVVERANTHVIGRLLNENGVW+VAPEDKR Sbjct: 101 EKEMQKVMHGDRVQARIVGTDRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKR 160 Query: 121 IGHDVLLAGPPGKAKAGQVVSVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYG 180 IGHDVLLAGPPGKAKAGQVVSVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYG Sbjct: 161 IGHDVLLAGPPGKAKAGQVVSVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYG 220 Query: 181 VPHEFSEAAKKLAAKLPSEVKAADLKDRVDLRDVPMVTIDGEDARDFDDAVYCEPVKIGR 240 VPHEFSEAAKKL+AKLPSEVKAADLKDRVDLRDVP+VTIDGEDARDFDDAVYCEPVKIGR Sbjct: 221 VPHEFSEAAKKLSAKLPSEVKAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGR 280 Query: 241 TKGYRLIVAIADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVD 300 TKGYRLIVAIADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVD Sbjct: 281 TKGYRLIVAIADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVD 340 Query: 301 RLTLVCDAVITAKGEIKAYQFYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLT 360 RLTLVCDAVITAKGEIKAYQFYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLT Sbjct: 341 RLTLVCDAVITAKGEIKAYQFYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLT 400 Query: 361 HLYEVFQALLTARQARGAIDFETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANV 420 HLYEVFQALLTARQARGAIDFETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANV Sbjct: 401 HLYEVFQALLTARQARGAIDFETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANV 460 Query: 421 CAADLLKRHDHPALYRVHAGPTKEKLTQLRTFLKQIGLTLGGGDTPSASDYAELMPKVKA 480 CAADLLKRHDHPALYR+HAGPTKEKLT LRTFLKQ+GLTLGGGDTPSASDYAELMPKVKA Sbjct: 461 CAADLLKRHDHPALYRIHAGPTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAELMPKVKA 520 Query: 481 RPDAVLIQTMLLRSMQQAVYSPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQG 540 RPDAVLIQTMLLRSMQQAVYSPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQG Sbjct: 521 RPDAVLIQTMLLRSMQQAVYSPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQG 580 Query: 541 KRYEPKGIDSTALNTSISPAARKAQALQRATDKAAGKKPRGESALAIWEALGLHCSANER 600 KRYEPKGIDS ALNTSISPAARKAQA QRA DKAAGKKPRGESALAIWEALGLHCSANER Sbjct: 581 KRYEPKGIDSGALNTSISPAARKAQAQQRAADKAAGKKPRGESALAIWEALGLHCSANER 640 Query: 601 RADEASRDVEAWLKCYFIRDKLGEEFTGTIAGVATFGIFVQLDALYIEGLVHVTELGADY 660 RADEASRDVEAWLKCYFIRDKLGEEFTGTI+GVATFGIFVQLDALYIEGLVHVTELGADY Sbjct: 641 RADEASRDVEAWLKCYFIRDKLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADY 700 Query: 661 FQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRTILKNEARRA 720 FQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDL LV EPGIRT+LKNEA+RA Sbjct: 701 FQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLLKNEAKRA 760 Query: 721 ESAQQARGKGGANAKAGG-------------ARKAAPEVAAPPAKAKGKTAARTGTAKGA 767 ESA +++ GG A+ +A A ART T + Sbjct: 761 ESAARSKSAGGRQAQEASQPAARGKKGAAAKPAASAAGSKAKGGAKAKAGGARTSTTR-P 819 Query: 768 AESERKRPA-KGFSRPSKKK 786 E++RKR A KGF++ KK+ Sbjct: 820 GEADRKRAASKGFAKGKKKR 839 >ref|YP_004752997.1| ribonuclease R [Collimonas fungivorans Ter331] gb|AEK62174.1| Ribonuclease R [Collimonas fungivorans Ter331] Length = 780 Score = 1303 bits (3371), Expect = 0.0, Method: Composition-based stats. Identities = 667/791 (84%), Positives = 718/791 (90%), Gaps = 15/791 (1%) Query: 1 MDGLTRRLNAMERDGQIKPDRAGNYKLTHSPDFILGRVSAHRDGFGFLLPDEGADDLFLP 60 MDGLTRRLNAMERDGQIKPDR+G YKLT+SP FI GRVS+HRDGFGFL+ DEG DD+FLP Sbjct: 1 MDGLTRRLNAMERDGQIKPDRSGVYKLTNSPGFIEGRVSSHRDGFGFLISDEGGDDVFLP 60 Query: 61 EKEMQKVMHGDRVQARITGTDRRGRPEGTIVEVVERANTHVIGRLLNENGVWVVAPEDKR 120 EKEMQKV+HGDRVQARI GTDRRGRPEGTIVEVV RANTHVIGRLLNENGVWV+APEDKR Sbjct: 61 EKEMQKVLHGDRVQARIIGTDRRGRPEGTIVEVVSRANTHVIGRLLNENGVWVIAPEDKR 120 Query: 121 IGHDVLLAGPPGKAKAGQVVSVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYG 180 IG D++LAG PGKAKAGQVVSV+LTE PSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYG Sbjct: 121 IGQDIILAGSPGKAKAGQVVSVQLTEQPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYG 180 Query: 181 VPHEFSEAAKKLAAKLPSEVKAADLKDRVDLRDVPMVTIDGEDARDFDDAVYCEPVKIGR 240 VPHEFSEAAKKLAAKLP EV+AADL DRVDLRDVP+VTIDGEDARDFDDAVYCEP+KIGR Sbjct: 181 VPHEFSEAAKKLAAKLPGEVRAADLGDRVDLRDVPLVTIDGEDARDFDDAVYCEPIKIGR 240 Query: 241 TKGYRLIVAIADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVD 300 GYRLIVAIADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVD Sbjct: 241 ANGYRLIVAIADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVD 300 Query: 301 RLTLVCDAVITAKGEIKAYQFYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLT 360 RLTLVCDAVI+AKGEIKAYQFYPAVIHSAARLTYTEVA+IL NTKGPEAA+R GLVPHL Sbjct: 301 RLTLVCDAVISAKGEIKAYQFYPAVIHSAARLTYTEVAAILGNTKGPEAAKRPGLVPHLL 360 Query: 361 HLYEVFQALLTARQARGAIDFETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANV 420 HLYEVF ALL ARQARGAIDFETTETYIVCNAAGKIEKILPRTRNDAH++IEECMLAANV Sbjct: 361 HLYEVFHALLQARQARGAIDFETTETYIVCNAAGKIEKILPRTRNDAHKVIEECMLAANV 420 Query: 421 CAADLLKRHDHPALYRVHAGPTKEKLTQLRTFLKQIGLTLGGGDTPSASDYAELMPKVKA 480 CAADL++RH HP L+R+HA PTKEKL LRTFLKQ+GLTL GGDTPSASDYA LMPK+KA Sbjct: 421 CAADLMERHKHPGLFRIHAHPTKEKLAVLRTFLKQVGLTLAGGDTPSASDYAALMPKIKA 480 Query: 481 RPDAVLIQTMLLRSMQQAVYSPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQG 540 RPDA+L+QTMLLRSMQQAVYSP+NIGHFGLSYESYAHFTSPIRRYPDLLTHR IKA+LQG Sbjct: 481 RPDALLLQTMLLRSMQQAVYSPENIGHFGLSYESYAHFTSPIRRYPDLLTHRTIKAILQG 540 Query: 541 KRYEPKGIDSTALNTSISPAARKAQALQRATDKAAGKKPRGESALAIWEALGLHCSANER 600 KRYEPKG D+++LNT +SPA RK Q A DKAAGKK R E +LA+WEALG+HCSANER Sbjct: 541 KRYEPKGFDTSSLNTMLSPAGRKKQ----AEDKAAGKK-RNEGSLAVWEALGVHCSANER 595 Query: 601 RADEASRDVEAWLKCYFIRDKLGEEFTGTIAGVATFGIFVQLDALYIEGLVHVTELGADY 660 RADEASRDVEAWLKCYFIRDKLGEEFTG I+GVATFGIFVQLDALYIEGLVHVTELGADY Sbjct: 596 RADEASRDVEAWLKCYFIRDKLGEEFTGVISGVATFGIFVQLDALYIEGLVHVTELGADY 655 Query: 661 FQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRTILKNEARRA 720 FQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLV EPGI+T+LKNEARRA Sbjct: 656 FQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVNEPGIKTVLKNEARRA 715 Query: 721 ESAQQARGKGGANAKAGGARKAAPEVAAPPAK----AKGKTAARTGTAKGAAESERKRPA 776 ++ +Q R GA KAGG KAAP ++ AK ++T AK A+ +E+ R Sbjct: 716 DN-EQGR---GAKPKAGG--KAAPPKKTGSSRVTTAAKTTAPSKTKKAKTASVAEKTRAP 769 Query: 777 KGFSRPSKKKR 787 K F++ SK+KR Sbjct: 770 KAFTKSSKRKR 780 >ref|YP_001353805.1| exoribonuclease RNAse R [Janthinobacterium sp. Marseille] gb|ABR89682.1| exoribonuclease RNAse R [Janthinobacterium sp. Marseille] Length = 816 Score = 1233 bits (3189), Expect = 0.0, Method: Composition-based stats. Identities = 632/787 (80%), Positives = 694/787 (88%), Gaps = 11/787 (1%) Query: 1 MDGLTRRLNAMERDGQIKPDRAGNYKLTHSPDFILGRVSAHRDGFGFLLPDEGADDLFLP 60 MDGL RRLNAMERDGQIKPDRAGNY+L HS +FI GRVS+HRDGFGFL+PD+ + D+FLP Sbjct: 41 MDGLMRRLNAMERDGQIKPDRAGNYQLAHSSNFIEGRVSSHRDGFGFLIPDDASADIFLP 100 Query: 61 EKEMQKVMHGDRVQARITGTDRRGRPEGTIVEVVERANTHVIGRLLNENGVWVVAPEDKR 120 EKEMQKV+HGDRVQARI GTDRRGRPEGTIVEVV RAN+HVIGRLLNENGVWVVAPEDKR Sbjct: 101 EKEMQKVLHGDRVQARIIGTDRRGRPEGTIVEVVARANSHVIGRLLNENGVWVVAPEDKR 160 Query: 121 IGHDVLLAGPPGKAKAGQVVSVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYG 180 IG D++LAG PGKAK GQVVSVELTE PSR++QPVGKIVE+LGDIDDPGMEIEIAVRKYG Sbjct: 161 IGQDIMLAGSPGKAKTGQVVSVELTEQPSRFSQPVGKIVEVLGDIDDPGMEIEIAVRKYG 220 Query: 181 VPHEFSEAAKKLAAKLPSEVKAADLKDRVDLRDVPMVTIDGEDARDFDDAVYCEPVKIGR 240 VPHEFSEAAKK AAKLP+EV+A DL DRVDLRDVP+VTIDGEDARDFDDAVYCEP KIGR Sbjct: 221 VPHEFSEAAKKAAAKLPNEVRAVDLHDRVDLRDVPLVTIDGEDARDFDDAVYCEPCKIGR 280 Query: 241 TKGYRLIVAIADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVD 300 G+RLIVAIADVS+YVKPN+ALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNP VD Sbjct: 281 ADGFRLIVAIADVSNYVKPNEALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPGVD 340 Query: 301 RLTLVCDAVITAKGEIKAYQFYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLT 360 RLTLVCDAVITAKGEIKAYQFYPAVIHSAARLTYTEVA+IL NTKG EA +R LVPHL Sbjct: 341 RLTLVCDAVITAKGEIKAYQFYPAVIHSAARLTYTEVAAILGNTKGIEATKRPALVPHLL 400 Query: 361 HLYEVFQALLTARQARGAIDFETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANV 420 +LY V+QALL AR ARGAIDFETTETYIVCN GKI++ILPRTRN+AH+LIEECMLAANV Sbjct: 401 NLYGVYQALLQARHARGAIDFETTETYIVCNEVGKIQQILPRTRNEAHKLIEECMLAANV 460 Query: 421 CAADLLKRHDHPALYRVHAGPTKEKLTQLRTFLKQIGLTLGGGDTPSASDYAELMPKVKA 480 CAADLL+RH H +LYRVHA PTKEKL Q+RTFLKQ+GL LGGGD P+ASDYAELMPK+K Sbjct: 461 CAADLLQRHKHHSLYRVHALPTKEKLNQVRTFLKQVGLNLGGGDKPTASDYAELMPKIKN 520 Query: 481 RPDAVLIQTMLLRSMQQAVYSPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQG 540 RPDA+L+QTMLLRSMQQAVYSP+NIGHFGLSYE+YAHFTSPIRRYPDLLTHRAIKA+LQG Sbjct: 521 RPDALLLQTMLLRSMQQAVYSPENIGHFGLSYEAYAHFTSPIRRYPDLLTHRAIKAILQG 580 Query: 541 KRYEPKGIDSTALNTSISPAARKAQALQRATDKAAGKKPRGESALAIWEALGLHCSANER 600 KRYEP+G+D++ LNT +SPAARK + A DKA GK+ + E LAIWEALG+HCSANER Sbjct: 581 KRYEPRGMDTSTLNTMLSPAARK----KHAQDKAEGKQ-KSEGDLAIWEALGIHCSANER 635 Query: 601 RADEASRDVEAWLKCYFIRDKLGEEFTGTIAGVATFGIFVQLDALYIEGLVHVTELGADY 660 RADEASRDVEAWLKCYFIRDKLGEEFTG I+GVATFGIFVQLD+L+IEG+VHVTELGAD+ Sbjct: 636 RADEASRDVEAWLKCYFIRDKLGEEFTGVISGVATFGIFVQLDSLFIEGMVHVTELGADH 695 Query: 661 FQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRTILKNEARRA 720 F++DEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLV EPGIRT+LKNEARRA Sbjct: 696 FKFDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVNEPGIRTVLKNEARRA 755 Query: 721 ESAQQARGKGGANAKAGGARKAAPEVAAPPAKAKGKTAARTGTAKGAAESERKRPAKGFS 780 ++ Q R K + AG A AA K K A RT A ++R Sbjct: 756 DNEHQQRSKKAEKSVAGKTATKATAPAATAPGKKAK-AKRT-----PATPNKQRAPAVHP 809 Query: 781 RPSKKKR 787 + SKKKR Sbjct: 810 KSSKKKR 816 >emb|CAL61451.2| RNase R, 3'-5' exoribonuclease [Herminiimonas arsenicoxydans] Length = 820 Score = 1231 bits (3186), Expect = 0.0, Method: Composition-based stats. Identities = 624/789 (79%), Positives = 692/789 (87%), Gaps = 11/789 (1%) Query: 1 MDGLTRRLNAMERDGQIKPDRAGNYKLTHSPDFILGRVSAHRDGFGFLLPDEGADDLFLP 60 MDGL RRLNAMERDGQIKPDR GNY+L HS +FI GRVS+HRDGFGFL+PD+ + D+FLP Sbjct: 41 MDGLMRRLNAMERDGQIKPDRTGNYQLAHSSNFIEGRVSSHRDGFGFLIPDDASADIFLP 100 Query: 61 EKEMQKVMHGDRVQARITGTDRRGRPEGTIVEVVERANTHVIGRLLNENGVWVVAPEDKR 120 EKEMQKV+HGDRVQARI GTDRRGRPEGTIVEVV RANTHVIGRLLNENGVW+VAPED+R Sbjct: 101 EKEMQKVLHGDRVQARIIGTDRRGRPEGTIVEVVARANTHVIGRLLNENGVWIVAPEDQR 160 Query: 121 IGHDVLLAGPPGKAKAGQVVSVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYG 180 IG D++L+G PG AK GQVVSVELTE PSR++QPVGKIVE+LGDIDDPGMEIEIAVRKYG Sbjct: 161 IGQDIMLSGSPGNAKTGQVVSVELTEQPSRFSQPVGKIVEVLGDIDDPGMEIEIAVRKYG 220 Query: 181 VPHEFSEAAKKLAAKLPSEVKAADLKDRVDLRDVPMVTIDGEDARDFDDAVYCEPVKIGR 240 VPHEFSE AKK A+KLP EV+A DL DRVDLRDVP+VTIDGEDARDFDDAVYCEP KIGR Sbjct: 221 VPHEFSEEAKKAASKLPDEVRAIDLTDRVDLRDVPLVTIDGEDARDFDDAVYCEPCKIGR 280 Query: 241 TKGYRLIVAIADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVD 300 G+RLIVAIADVS+YVKPN+ LDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNP VD Sbjct: 281 ADGFRLIVAIADVSNYVKPNEPLDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPGVD 340 Query: 301 RLTLVCDAVITAKGEIKAYQFYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLT 360 RLTLVCDAVIT KGEIKAYQFYPAV+HSAARLTYTEVA+IL NTKG EAA+R LVPHL Sbjct: 341 RLTLVCDAVITTKGEIKAYQFYPAVMHSAARLTYTEVAAILGNTKGIEAAKRPALVPHLL 400 Query: 361 HLYEVFQALLTARQARGAIDFETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANV 420 +L+ V++ALL AR ARGAIDFETTETYIVCN GKIE+ILPRTRN+AH+LIEECMLAANV Sbjct: 401 NLHGVYKALLQARHARGAIDFETTETYIVCNEVGKIEQILPRTRNEAHKLIEECMLAANV 460 Query: 421 CAADLLKRHDHPALYRVHAGPTKEKLTQLRTFLKQIGLTLGGGDTPSASDYAELMPKVKA 480 CAADLL+RH HP+LYRVHA PTKEKL Q+RTFLKQ+GL L GGD PSASDYAELMPK+K Sbjct: 461 CAADLLERHKHPSLYRVHALPTKEKLNQVRTFLKQVGLNLPGGDKPSASDYAELMPKIKN 520 Query: 481 RPDAVLIQTMLLRSMQQAVYSPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQG 540 RPDA+L+QTMLLRSMQQAVYSP+NIGHFGLSYE+YAHFTSPIRRYPDLLTHRAIKA+LQG Sbjct: 521 RPDALLLQTMLLRSMQQAVYSPENIGHFGLSYEAYAHFTSPIRRYPDLLTHRAIKAILQG 580 Query: 541 KRYEPKGIDSTALNTSISPAARKAQALQRATDKAAGK-KPRGESALAIWEALGLHCSANE 599 KRY PKGID++ALNT +S AARK + A DKA GK + + E LAIWEALG+HCSANE Sbjct: 581 KRYTPKGIDTSALNTMLSSAARK----KHAQDKAEGKQREKAEGDLAIWEALGIHCSANE 636 Query: 600 RRADEASRDVEAWLKCYFIRDKLGEEFTGTIAGVATFGIFVQLDALYIEGLVHVTELGAD 659 RRADEASRDVEAWLKCYFIRDKLGEEFTG I+GV TFGIFVQLD L+IEG+VHVTELGAD Sbjct: 637 RRADEASRDVEAWLKCYFIRDKLGEEFTGVISGVTTFGIFVQLDTLFIEGMVHVTELGAD 696 Query: 660 YFQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRTILKNEARR 719 +F++DE+RHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRT+LKNEARR Sbjct: 697 HFKFDESRHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRTVLKNEARR 756 Query: 720 AESAQQARGKGGAN-AKAGGARKAAPEVAAPPAKAKGKTAARTGTAKGAAESERKRPAKG 778 A++ Q R K G ++ ARK+A V A A + A ++++ PA Sbjct: 757 ADTEHQQRTKKGEQKSEPKSARKSA--VKAATADNAPAKKPKAAKRPPATPNKQRPPA-- 812 Query: 779 FSRPSKKKR 787 +PSKKKR Sbjct: 813 -VKPSKKKR 820 >ref|YP_001099578.1| RNase R, 3'-5' exoribonuclease [Herminiimonas arsenicoxydans] Length = 776 Score = 1221 bits (3159), Expect = 0.0, Method: Composition-based stats. Identities = 620/784 (79%), Positives = 688/784 (87%), Gaps = 11/784 (1%) Query: 6 RRLNAMERDGQIKPDRAGNYKLTHSPDFILGRVSAHRDGFGFLLPDEGADDLFLPEKEMQ 65 RRLNAMERDGQIKPDR GNY+L HS +FI GRVS+HRDGFGFL+PD+ + D+FLPEKEMQ Sbjct: 2 RRLNAMERDGQIKPDRTGNYQLAHSSNFIEGRVSSHRDGFGFLIPDDASADIFLPEKEMQ 61 Query: 66 KVMHGDRVQARITGTDRRGRPEGTIVEVVERANTHVIGRLLNENGVWVVAPEDKRIGHDV 125 KV+HGDRVQARI GTDRRGRPEGTIVEVV RANTHVIGRLLNENGVW+VAPED+RIG D+ Sbjct: 62 KVLHGDRVQARIIGTDRRGRPEGTIVEVVARANTHVIGRLLNENGVWIVAPEDQRIGQDI 121 Query: 126 LLAGPPGKAKAGQVVSVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEF 185 +L+G PG AK GQVVSVELTE PSR++QPVGKIVE+LGDIDDPGMEIEIAVRKYGVPHEF Sbjct: 122 MLSGSPGNAKTGQVVSVELTEQPSRFSQPVGKIVEVLGDIDDPGMEIEIAVRKYGVPHEF 181 Query: 186 SEAAKKLAAKLPSEVKAADLKDRVDLRDVPMVTIDGEDARDFDDAVYCEPVKIGRTKGYR 245 SE AKK A+KLP EV+A DL DRVDLRDVP+VTIDGEDARDFDDAVYCEP KIGR G+R Sbjct: 182 SEEAKKAASKLPDEVRAIDLTDRVDLRDVPLVTIDGEDARDFDDAVYCEPCKIGRADGFR 241 Query: 246 LIVAIADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLV 305 LIVAIADVS+YVKPN+ LDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNP VDRLTLV Sbjct: 242 LIVAIADVSNYVKPNEPLDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPGVDRLTLV 301 Query: 306 CDAVITAKGEIKAYQFYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEV 365 CDAVIT KGEIKAYQFYPAV+HSAARLTYTEVA+IL NTKG EAA+R LVPHL +L+ V Sbjct: 302 CDAVITTKGEIKAYQFYPAVMHSAARLTYTEVAAILGNTKGIEAAKRPALVPHLLNLHGV 361 Query: 366 FQALLTARQARGAIDFETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADL 425 ++ALL AR ARGAIDFETTETYIVCN GKIE+ILPRTRN+AH+LIEECMLAANVCAADL Sbjct: 362 YKALLQARHARGAIDFETTETYIVCNEVGKIEQILPRTRNEAHKLIEECMLAANVCAADL 421 Query: 426 LKRHDHPALYRVHAGPTKEKLTQLRTFLKQIGLTLGGGDTPSASDYAELMPKVKARPDAV 485 L+RH HP+LYRVHA PTKEKL Q+RTFLKQ+GL L GGD PSASDYAELMPK+K RPDA+ Sbjct: 422 LERHKHPSLYRVHALPTKEKLNQVRTFLKQVGLNLPGGDKPSASDYAELMPKIKNRPDAL 481 Query: 486 LIQTMLLRSMQQAVYSPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEP 545 L+QTMLLRSMQQAVYSP+NIGHFGLSYE+YAHFTSPIRRYPDLLTHRAIKA+LQGKRY P Sbjct: 482 LLQTMLLRSMQQAVYSPENIGHFGLSYEAYAHFTSPIRRYPDLLTHRAIKAILQGKRYTP 541 Query: 546 KGIDSTALNTSISPAARKAQALQRATDKAAGK-KPRGESALAIWEALGLHCSANERRADE 604 KGID++ALNT +S AARK + A DKA GK + + E LAIWEALG+HCSANERRADE Sbjct: 542 KGIDTSALNTMLSSAARK----KHAQDKAEGKQREKAEGDLAIWEALGIHCSANERRADE 597 Query: 605 ASRDVEAWLKCYFIRDKLGEEFTGTIAGVATFGIFVQLDALYIEGLVHVTELGADYFQYD 664 ASRDVEAWLKCYFIRDKLGEEFTG I+GV TFGIFVQLD L+IEG+VHVTELGAD+F++D Sbjct: 598 ASRDVEAWLKCYFIRDKLGEEFTGVISGVTTFGIFVQLDTLFIEGMVHVTELGADHFKFD 657 Query: 665 EARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRTILKNEARRAESAQ 724 E+RHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRT+LKNEARRA++ Sbjct: 658 ESRHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRTVLKNEARRADTEH 717 Query: 725 QARGKGGAN-AKAGGARKAAPEVAAPPAKAKGKTAARTGTAKGAAESERKRPAKGFSRPS 783 Q R K G ++ ARK+A V A A + A ++++ PA +PS Sbjct: 718 QQRTKKGEQKSEPKSARKSA--VKAATADNAPAKKPKAAKRPPATPNKQRPPA---VKPS 772 Query: 784 KKKR 787 KKKR Sbjct: 773 KKKR 776