BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2277.p (497 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775278.1| deoxyribodipyrimidine photolyase [Herbaspiri... 874 0.0 ref|YP_004751455.1| deoxyribodipyrimidine photolyase [Collimonas... 694 0.0 ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase [Janthinob... 669 0.0 ref|YP_294929.1| deoxyribodipyrimidine photo-lyase type I [Ralst... 650 0.0 ref|YP_001100980.1| deoxyribodipyrimidine photolyase [Herminiimo... 646 0.0 >ref|YP_003775278.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1] gb|ADJ63370.1| deoxyribodipyrimidine photolyase (photoreactivation) protein [Herbaspirillum seropedicae SmR1] Length = 494 Score = 874 bits (2259), Expect = 0.0, Method: Composition-based stats. Identities = 437/494 (88%), Positives = 457/494 (92%) Query: 1 MPQFDKSLVWFRRDLRHTDHAALYYALSQSQSVWCVFVFDTDILDALKAEGVAQDRRVDF 60 MPQFD+SLVWFRRDLR TDHAALYYALSQS+ VWCVFVFDTDIL ALKAEGV QDRR+DF Sbjct: 1 MPQFDRSLVWFRRDLRMTDHAALYYALSQSRQVWCVFVFDTDILAALKAEGVTQDRRIDF 60 Query: 61 LLASVAELDEALRKAGGGLIVLHGAAASCIPELAAELDVQAVFVNTDYEPAAVERDAAVA 120 LLASVAELDEALR AGGGLIVLHG+A + IP LAAELDVQAV+ NTDYEPAAVERDAAVA Sbjct: 61 LLASVAELDEALRHAGGGLIVLHGSAVTQIPALAAELDVQAVYANTDYEPAAVERDAAVA 120 Query: 121 TALKKHGAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMAKLAAADGDFYLKPYLV 180 L K GAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWM+KLAAADGDF+LKPY V Sbjct: 121 QTLAKSGAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMSKLAAADGDFFLKPYPV 180 Query: 181 ENYFKALAKPPGKAHQGLPSHKALGFHPSNLQELKIPTGMSGAQALLEDFLGRIGAYGTA 240 E Y ALA PPGKA LPSH+ LGF PSNLQELKIPTGMSGAQ+LL++FL RIG+YG A Sbjct: 181 EKYLTALASPPGKAGHALPSHRQLGFAPSNLQELKIPTGMSGAQSLLDEFLDRIGSYGAA 240 Query: 241 RDFPAVKGPSYLSIHLRFGTVSIRTLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMIL 300 RDFPAVKGPSYLS+HLRFGT+SIRTLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMIL Sbjct: 241 RDFPAVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMIL 300 Query: 301 HHHPRVTAKAFKPEYDAIKWEHGKHAEELFAAWCEGRTGYPLVDAAMAQINQTGYMHNRL 360 HHHPRVT AFKPEYDAI+WE G AE LFAAWCEGRTGYPLVDAAMAQINQ+GYMHNRL Sbjct: 301 HHHPRVTRHAFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMHNRL 360 Query: 361 RMVVASFLTKDLGIDWRWGEKYFAIHLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVT 420 RMVVASFLTKDLGIDWRWGE+YFA HLNDFDL+ANNGGWQWASSSGCDAQPYFRIFNPVT Sbjct: 361 RMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVT 420 Query: 421 QSEKFDPDGKFIRRYLPQLAKLSDKRIHAPWTATPDERMSAGVTLGTNYPRPIVDHAQAR 480 QSEKFDPDGKFIRRYLPQLAKLS+KRIHAPWTATPDERM AGV LG NYPRPIVDHAQAR Sbjct: 421 QSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIVDHAQAR 480 Query: 481 ERTLERYAVVKKTE 494 ERTL RYAVVKK E Sbjct: 481 ERTLARYAVVKKAE 494 >ref|YP_004751455.1| deoxyribodipyrimidine photolyase [Collimonas fungivorans Ter331] gb|AEK60632.1| Deoxyribodipyrimidine photolyase [Collimonas fungivorans Ter331] Length = 510 Score = 694 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 341/491 (69%), Positives = 386/491 (78%) Query: 1 MPQFDKSLVWFRRDLRHTDHAALYYALSQSQSVWCVFVFDTDILDALKAEGVAQDRRVDF 60 MPQF+KSLVWFRRDLR +DHAAL++AL S +V+CVFVFDTDIL L G+ DRRV+F Sbjct: 15 MPQFEKSLVWFRRDLRMSDHAALHHALKNSAAVFCVFVFDTDILQPLLDAGLGADRRVEF 74 Query: 61 LLASVAELDEALRKAGGGLIVLHGAAASCIPELAAELDVQAVFVNTDYEPAAVERDAAVA 120 + SV ELD LRK GGGL+V HG A IP LA +L V AVF N DYEP A +RDA VA Sbjct: 75 IRGSVTELDLELRKLGGGLLVRHGPAHDVIPALARQLGVNAVFSNHDYEPQARQRDAGVA 134 Query: 121 TALKKHGAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMAKLAAADGDFYLKPYLV 180 L G SYKDQVIFE +EVLT + +PFSVFTPYKNAWM +LAAADG F+LKPY + Sbjct: 135 RTLAADGRAWHSYKDQVIFECEEVLTMAGQPFSVFTPYKNAWMKRLAAADGSFFLKPYPI 194 Query: 181 ENYFKALAKPPGKAHQGLPSHKALGFHPSNLQELKIPTGMSGAQALLEDFLGRIGAYGTA 240 E Y LA PP + +PS ALGF +NL+ELKI GMSGA LLEDF+ R+G YG + Sbjct: 195 EKYAARLAPPPSSPPEKIPSLAALGFKKTNLRELKIAPGMSGACGLLEDFMPRLGQYGQS 254 Query: 241 RDFPAVKGPSYLSIHLRFGTVSIRTLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMIL 300 RDFPAVKGPSYLSIHLRFGT+SIRTLAR A QA+H G A GAA+WLSEL WRDFYFMIL Sbjct: 255 RDFPAVKGPSYLSIHLRFGTISIRTLARLAYQALHQGAAAGGAAIWLSELIWRDFYFMIL 314 Query: 301 HHHPRVTAKAFKPEYDAIKWEHGKHAEELFAAWCEGRTGYPLVDAAMAQINQTGYMHNRL 360 HHHP V AFKPEYDAI+WE G+ A LF AWC+GRTGYPLVDAAM Q+NQ+GYMHNRL Sbjct: 315 HHHPHVAGAAFKPEYDAIRWESGERAHSLFLAWCDGRTGYPLVDAAMLQLNQSGYMHNRL 374 Query: 361 RMVVASFLTKDLGIDWRWGEKYFAIHLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVT 420 RMV ASFL KDLGIDWRWGE+YFA LNDFDL+ANNGGWQWA+SSGCDAQPYFRIFNP+T Sbjct: 375 RMVTASFLIKDLGIDWRWGERYFAERLNDFDLAANNGGWQWAASSGCDAQPYFRIFNPIT 434 Query: 421 QSEKFDPDGKFIRRYLPQLAKLSDKRIHAPWTATPDERMSAGVTLGTNYPRPIVDHAQAR 480 QSEKFD DGKFIRRYLPQL+ L D+ IHAPW A E AG+ LG +YP P+V H +AR Sbjct: 435 QSEKFDADGKFIRRYLPQLSALGDRHIHAPWLAPAQELERAGIRLGQDYPLPLVQHDEAR 494 Query: 481 ERTLERYAVVK 491 + TL+RYAVVK Sbjct: 495 KATLQRYAVVK 505 >ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille] gb|ABR89703.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille] Length = 495 Score = 669 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 329/492 (66%), Positives = 373/492 (75%), Gaps = 5/492 (1%) Query: 1 MPQFDKSLVWFRRDLRHTDHAALYYALSQSQSVWCVFVFDTDILDALKAEGVAQDRRVDF 60 MP F+K+LVWFRRDLR DHAAL++AL Q + V+C F+FD ILD L + DRRV+F Sbjct: 1 MPLFEKTLVWFRRDLRSFDHAALHHALRQGRQVYCAFIFDRAILDELPS----TDRRVEF 56 Query: 61 LLASVAELDEALRKAGGGLIVLHGAAASCIPELAAELDVQAVFVNTDYEPAAVERDAAVA 120 + AS+ ELD ALR GGGLIV H A IP+LAAEL V AVF N DYEP A+ RD AVA Sbjct: 57 IHASLQELDTALRALGGGLIVRHARAEQAIPQLAAELGVDAVFCNHDYEPQAIARDGAVA 116 Query: 121 TALKKHGAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMAKLAAADGDFYLKPYLV 180 AL G +L +YKD VIFEKDEVL+QS KPFSVFTPYKNAW+ KL + Y + Sbjct: 117 AALATDGRKLQTYKDHVIFEKDEVLSQSGKPFSVFTPYKNAWLKKLHTELAPADMPAYEI 176 Query: 181 ENYFKALAKPPGKAHQGLPSHKALGFHPSNLQELKIPTGMSGAQALLEDFLGRIGAYGTA 240 + A P G+P+ LGF +NL EL IPTGM G QAL +DF+ R+ Y + Sbjct: 177 DTLRAHFAPLPANL-SGIPALSELGFEKTNLTELNIPTGMQGGQALFDDFIDRMPDYDST 235 Query: 241 RDFPAVKGPSYLSIHLRFGTVSIRTLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMIL 300 RDFPAVKGPSYLS+HLRFGTVSIR L R A+ AM G G GAAVWLSEL WRDFYFMIL Sbjct: 236 RDFPAVKGPSYLSVHLRFGTVSIRALVRRALDAMRIGAGGTGAAVWLSELVWRDFYFMIL 295 Query: 301 HHHPRVTAKAFKPEYDAIKWEHGKHAEELFAAWCEGRTGYPLVDAAMAQINQTGYMHNRL 360 + HP V +AFKP+YDAI WE+G HAEELF AWC+GRTGYPLVDAAMAQ+NQTGYMHNRL Sbjct: 296 YQHPHVRERAFKPDYDAIIWENGPHAEELFQAWCDGRTGYPLVDAAMAQLNQTGYMHNRL 355 Query: 361 RMVVASFLTKDLGIDWRWGEKYFAIHLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVT 420 RMV ASFL KDLGIDWRWGE+YFA LNDFDL+ANNGGWQWASSSGCDAQPYFRIFNP+T Sbjct: 356 RMVTASFLIKDLGIDWRWGERYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPLT 415 Query: 421 QSEKFDPDGKFIRRYLPQLAKLSDKRIHAPWTATPDERMSAGVTLGTNYPRPIVDHAQAR 480 QSEKFDPDGKFIRRYLPQL KLS K+IHAPW E AG+TLG +YP P++ H +AR Sbjct: 416 QSEKFDPDGKFIRRYLPQLGKLSGKQIHAPWRVPALELQMAGITLGRDYPHPLLQHDEAR 475 Query: 481 ERTLERYAVVKK 492 RTL RYAVVKK Sbjct: 476 ARTLLRYAVVKK 487 >ref|YP_294929.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha JMP134] gb|AAZ60085.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha JMP134] Length = 525 Score = 650 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 325/497 (65%), Positives = 376/497 (75%), Gaps = 6/497 (1%) Query: 3 QFDKSLVWFRRDLRHTDHAALYYALSQSQSVWCVFVFDTDILDALKAEGVAQDRRVDFLL 62 QFD+ LVWFRRDLR TDHAAL+YAL + VWCVFVFD DILD L A G+ DRRVDF+ Sbjct: 32 QFDRGLVWFRRDLRSTDHAALHYALKHCREVWCVFVFDRDILDPLLARGLKGDRRVDFIR 91 Query: 63 ASVAELDEALRKAGGGLIVLHGAAASCIPELAAELDVQAVFVNTDYEPAAVERDAAVATA 122 AS+ ELD LR AGGGLIV++ +AAS IP LA EL VQAVF N DYEP AV RDAAV + Sbjct: 92 ASLIELDATLRAAGGGLIVMNDSAASAIPALARELGVQAVFANHDYEPDAVARDAAVRDS 151 Query: 123 LKKHGAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMAKLAAADGDFYLKPYLVEN 182 L L ++KDQVIFE+DE+LT KPF+VFTPYKNAW+ + D L+PY +E Sbjct: 152 LAGDARVLFTFKDQVIFERDEILTSQGKPFAVFTPYKNAWLKTIQPFD----LRPYPIEP 207 Query: 183 YFKALAKPPGKAHQGLPSHKALGFHPSNLQELKIPTGMSGAQALLEDFLGRIGAYGTARD 242 Y ALA P K LPS + LGF PSNL E+ +PTG SG QAL E+F R+G YG RD Sbjct: 208 YLHALAPLPSKRLVPLPSLEDLGFAPSNLAEVAMPTGSSGGQALFEEFTSRMGDYGRRRD 267 Query: 243 FPAVKGPSYLSIHLRFGTVSIRTLARAAMQA-MHAGQGAAGAAVWLSELTWRDFYFMILH 301 +PA++GPSYLS+HLRFGTVSIRTLARAA A + G +AGAA WLSEL WRDFYFMILH Sbjct: 268 YPALRGPSYLSVHLRFGTVSIRTLARAAHGAVLRGGADSAGAATWLSELVWRDFYFMILH 327 Query: 302 HHPRVTA-KAFKPEYDAIKWEHGKHAEELFAAWCEGRTGYPLVDAAMAQINQTGYMHNRL 360 HHPRV A +AF P YD I+W G+ + F +W + TGYPLVDAAM QI Q+GYMHNRL Sbjct: 328 HHPRVAAGEAFHPAYDIIRWRDGETGDRYFESWRDAATGYPLVDAAMLQIRQSGYMHNRL 387 Query: 361 RMVVASFLTKDLGIDWRWGEKYFAIHLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVT 420 RMV ASFL KDLG+DWR GE YFA LNDFD +ANNGGWQWA+S+GCDAQP+FRIFNPVT Sbjct: 388 RMVTASFLVKDLGVDWRRGEHYFADQLNDFDFAANNGGWQWAASTGCDAQPWFRIFNPVT 447 Query: 421 QSEKFDPDGKFIRRYLPQLAKLSDKRIHAPWTATPDERMSAGVTLGTNYPRPIVDHAQAR 480 QSEKFDP G+FIR+YLPQLA L DK +HAPWTA D ++AGV LG NYPRP+V H AR Sbjct: 448 QSEKFDPQGRFIRKYLPQLAALPDKYVHAPWTAPQDVLLAAGVRLGENYPRPLVQHDVAR 507 Query: 481 ERTLERYAVVKKTEKTE 497 + TLERYAVVK+ + E Sbjct: 508 KETLERYAVVKEWRRPE 524 >ref|YP_001100980.1| deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans] emb|CAL62859.1| Deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans] Length = 493 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 326/492 (66%), Positives = 374/492 (76%), Gaps = 5/492 (1%) Query: 1 MPQFDKSLVWFRRDLRHTDHAALYYALSQSQSVWCVFVFDTDILDALKAEGVAQDRRVDF 60 M +F+K+LVWFRRDLR DHAAL++AL+QS+ V+CVF+FD ILDAL DRRV+F Sbjct: 1 MLRFEKTLVWFRRDLRSVDHAALHHALAQSRQVYCVFIFDRAILDALPR----ADRRVEF 56 Query: 61 LLASVAELDEALRKAGGGLIVLHGAAASCIPELAAELDVQAVFVNTDYEPAAVERDAAVA 120 + AS+ EL +ALR GGGLIV H A + IPELA EL V AVF N DYEP A+ RDA VA Sbjct: 57 IHASLLELAQALRALGGGLIVQHAWAETAIPELAIELGVDAVFANHDYEPQAITRDAHVA 116 Query: 121 TALKKHGAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMAKLAAADGDFYLKPYLV 180 AL+ G L ++KDQV+FEK+EVLTQ+ KPFSVFTPYKNAW+ KL A + L+PY + Sbjct: 117 AALQAAGRSLHTFKDQVVFEKNEVLTQAEKPFSVFTPYKNAWLKKLYAESNEATLRPYEI 176 Query: 181 ENYFKALAKPPGKAHQGLPSHKALGFHPSNLQELKIPTGMSGAQALLEDFLGRIGAYGTA 240 + Y P ++ +PS LGF +NL +L IPTGM GAQ LL+ F R+ Y Sbjct: 177 DAYADRFVNLP-ESKFPIPSLTDLGFEKTNLPDLNIPTGMQGAQDLLDAFADRMQRYDQT 235 Query: 241 RDFPAVKGPSYLSIHLRFGTVSIRTLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMIL 300 RDFPA+KGPSYLS+H+RFGTVSIR LAR A+ AM G G GAAVWLSEL WRDFYFMIL Sbjct: 236 RDFPALKGPSYLSVHVRFGTVSIRALARRALDAMRTGTGGNGAAVWLSELVWRDFYFMIL 295 Query: 301 HHHPRVTAKAFKPEYDAIKWEHGKHAEELFAAWCEGRTGYPLVDAAMAQINQTGYMHNRL 360 HP V AFK +YDAI WE G HA LF AWC+G+TGYPLVDAAMAQ+NQTGYMHNRL Sbjct: 296 FQHPHVVDHAFKADYDAITWESGDHARRLFQAWCDGQTGYPLVDAAMAQLNQTGYMHNRL 355 Query: 361 RMVVASFLTKDLGIDWRWGEKYFAIHLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVT 420 RMV ASFL KDLGIDWRWGE YFA LNDFDL+ANNGGWQWASSSGCDAQPYFRIFNP+T Sbjct: 356 RMVTASFLIKDLGIDWRWGEHYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPIT 415 Query: 421 QSEKFDPDGKFIRRYLPQLAKLSDKRIHAPWTATPDERMSAGVTLGTNYPRPIVDHAQAR 480 QSEKFD GKFIRRYLPQLAKLSD+ IHAPW A E AGV +G NYP P+V H +AR Sbjct: 416 QSEKFDQQGKFIRRYLPQLAKLSDRHIHAPWCAPALELRMAGVEIGNNYPGPLVQHDEAR 475 Query: 481 ERTLERYAVVKK 492 RTL+RYAVVKK Sbjct: 476 ARTLQRYAVVKK 487