BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2276.p (554 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775277.1| major facilitator superfamily permease [Herb... 927 0.0 ref|YP_004226870.1| major facilitator superfamily protein [Burkh... 714 0.0 ref|YP_001894286.1| EmrB/QacA subfamily drug resistance transpor... 713 0.0 ref|YP_003905651.1| major facilitator superfamily protein [Burkh... 703 0.0 ref|YP_556989.1| major facilitator superfamily multidrug efflux ... 700 0.0 >ref|YP_003775277.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ63369.1| permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] Length = 532 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 511/532 (96%), Positives = 526/532 (98%) Query: 23 MALHTDAAHSSGQVLPFRESLLATLGICFVIMLVALDQTIVGTALPTIVAELKGFDLYAW 82 MALHTD+AHSSGQVLPFRESLLATLGICFVIMLVALDQTIVGTALPTIVAELKGF+LYAW Sbjct: 1 MALHTDSAHSSGQVLPFRESLLATLGICFVIMLVALDQTIVGTALPTIVAELKGFELYAW 60 Query: 83 VATAYLLTSVITVPIFGRLGDYFGRKPFVIASIVVFVGASALCGMANSMLFLVLARGLQG 142 VATAYLLTSVITVPIFGRLGDYFGRKPFVIASI+VFVGASALCGMANSMLFLVLARGLQG Sbjct: 61 VATAYLLTSVITVPIFGRLGDYFGRKPFVIASIIVFVGASALCGMANSMLFLVLARGLQG 120 Query: 143 IGGGMLVGTCFASIADLFPDPRVRLRWQIILSASFGIATAVGPSLGGFLTQGLGWRWVFY 202 IGGGMLVGTCFAS+ADLFPDPRVRLRWQIILS SFGIATAVGPSLGGFLTQGLGWRWVFY Sbjct: 121 IGGGMLVGTCFASVADLFPDPRVRLRWQIILSVSFGIATAVGPSLGGFLTQGLGWRWVFY 180 Query: 203 CNLPIGVLSLYFVWRFVPHIRHMQHAGKMRLDWPGALLISLSLGSLQLLVELLPKRGITG 262 CNLPIGV+SL+FVWRFVPHIRHMQHAGKMRLDWPGALLISLSLGSLQLLVELLPKRG+T Sbjct: 181 CNLPIGVISLFFVWRFVPHIRHMQHAGKMRLDWPGALLISLSLGSLQLLVELLPKRGVTS 240 Query: 263 GMMVLLAVSVAAFYALWRWEQRAAQPILPFEMMRDKALASLFVLSVLAGFAMFSLLMYAP 322 GM+VLLAVSVAAFYALW+WEQRAAQPILPFEM+RD+ALASLF+LSVLAGFAMFS+LMYAP Sbjct: 241 GMLVLLAVSVAAFYALWKWEQRAAQPILPFEMLRDRALASLFLLSVLAGFAMFSMLMYAP 300 Query: 323 LLFQGGFGLSPREAGLLITPLVACITVASIVNGRIITRIPNPNLMMNLGFALIAASCLGV 382 LLFQGGFGLSPREAGLLITPLVACITVASIVNGRIITRIPNPNLMMNLGFALIAASCLG+ Sbjct: 301 LLFQGGFGLSPREAGLLITPLVACITVASIVNGRIITRIPNPNLMMNLGFALIAASCLGI 360 Query: 383 VLCDRTTGNGFLLTVMLAGGFGLGLVLPNLTVFAQQAAAREHLGIATALLQSLRMIGGML 442 VLCDR TG GFLL VMLAGGFGLGLVLPNLTVFAQQAAAREHLGIATALLQSLRMIGGML Sbjct: 361 VLCDRVTGKGFLLAVMLAGGFGLGLVLPNLTVFAQQAAAREHLGIATALLQSLRMIGGML 420 Query: 443 GTAITGTLVSQMYGAGVQKALEGDHAAQWLKDFSDPEVLVNHDIQSVLLAQLMQAGHDGS 502 GTAITGTLVSQMYGAGV+KALEGDHAAQWLKDFSDPEVLVNHDIQSVLLAQLMQAGHDGS Sbjct: 421 GTAITGTLVSQMYGAGVEKALEGDHAAQWLKDFSDPEVLVNHDIQSVLLAQLMQAGHDGS 480 Query: 503 ALLEAAREALVGAIHMGIAIAIVAALAGLWMVRRVPPIRFDQDKKVEPVMSE 554 ALLEAAREALVGAIHMGIAIAIVAAL GLWMVRRVPPIRFDQDKKVEPVMSE Sbjct: 481 ALLEAAREALVGAIHMGIAIAIVAALVGLWMVRRVPPIRFDQDKKVEPVMSE 532 >ref|YP_004226870.1| major facilitator superfamily protein [Burkholderia sp. CCGE1001] gb|ADX53810.1| major facilitator superfamily MFS_1 [Burkholderia sp. CCGE1001] Length = 531 Score = 714 bits (1844), Expect = 0.0, Method: Composition-based stats. Identities = 372/530 (70%), Positives = 446/530 (84%), Gaps = 2/530 (0%) Query: 23 MALHTDAAHSSGQVLPFRESLLATLGICFVIMLVALDQTIVGTALPTIVAELKGFDLYAW 82 MA+HT A HSSGQVLPFRESLLA LGI FV MLVALDQT+VGTALPTIVAELKGF+LYAW Sbjct: 1 MAVHTAAHHSSGQVLPFRESLLAMLGISFVTMLVALDQTVVGTALPTIVAELKGFELYAW 60 Query: 83 VATAYLLTSVITVPIFGRLGDYFGRKPFVIASIVVFVGASALCGMANSMLFLVLARGLQG 142 VAT+YLLTSVITVPIFGRLGDY+GRKPFVIASIVVF GAS LCG+AN+MLFLVLARGLQG Sbjct: 61 VATSYLLTSVITVPIFGRLGDYYGRKPFVIASIVVFTGASVLCGVANNMLFLVLARGLQG 120 Query: 143 IGGGMLVGTCFASIADLFPDPRVRLRWQIILSASFGIATAVGPSLGGFLTQGLGWRWVFY 202 IGGGMLVGT FA I DLFPD VRLRWQ+++S++FGIA AVGPSLGGFLTQ GWR VFY Sbjct: 121 IGGGMLVGTAFACIPDLFPDSVVRLRWQVLMSSAFGIANAVGPSLGGFLTQYYGWRSVFY 180 Query: 203 CNLPIGVLSLYFVWRFVPHIRHMQHAGKMRLDWPGALLISLSLGSLQLLVELLPKRGITG 262 NLP+G+LSL+FVWRF+PH+RH++H GKMRLDWPGA LI+++LGSLQL VELLPK G+T Sbjct: 181 VNLPVGILSLFFVWRFLPHLRHVEHKGKMRLDWPGAALIAVALGSLQLFVELLPKHGLTL 240 Query: 263 GMMVLLAVSVAAFYALWRWEQRAAQPILPFEMMRDKALASLFVLSVLAGFAMFSLLMYAP 322 G LL +SVA+ YALW+WE+R ILP +M R+++LA+LF L+VL GF MFSLL YAP Sbjct: 241 GACALLVLSVASAYALWQWEKRCPTAILPVDMFRNQSLAALFTLAVLGGFTMFSLLFYAP 300 Query: 323 LLFQGGFGLSPREAGLLITPLVACITVASIVNGRIITRIPNPNLMMNLGFALIAASCLGV 382 LLFQGGFG+SP+EAG++ITPLV IT+ SI NGR+++R+ NPNLM+ +GFAL+A SCLGV Sbjct: 301 LLFQGGFGMSPKEAGVVITPLVVFITIGSIANGRVVSRVRNPNLMLYVGFALVALSCLGV 360 Query: 383 VLCDRTTGNGFLLTVMLAGGFGLGLVLPNLTVFAQQAAAREHLGIATALLQSLRMIGGML 442 V+ R+ + L++ M+ GG GLG V+PNLT+FAQQ A REHLGIATALLQSLRMIGGM+ Sbjct: 361 VVATRSMPHWLLMSFMVLGGLGLGFVMPNLTIFAQQTAGREHLGIATALLQSLRMIGGMI 420 Query: 443 GTAITGTLVSQMYGAGVQKALEGDHAAQWLKDFSDPEVLVNHDIQSVLLAQLMQAGHDGS 502 GTA+TGTLVS MY +GV+ LE DHA+QW D DP++L+NH+ Q+ LL QL QAGH+G+ Sbjct: 421 GTALTGTLVSHMYASGVRSTLESDHASQWFGDLGDPQILINHEAQASLLGQLAQAGHNGA 480 Query: 503 ALLEAAREALVGAIHMGIAIAIVAALAGLWMVRRVPPIRFDQDKKVEPVM 552 LLE ARE LV AIH G+A+A + A+ +W RRVPPI+ +K+EPV+ Sbjct: 481 MLLETARETLVAAIHFGLAMAAIVAVVSVWQSRRVPPIKL--QRKLEPVI 528 >ref|YP_001894286.1| EmrB/QacA subfamily drug resistance transporter [Burkholderia phytofirmans PsJN] gb|ACD15062.1| drug resistance transporter, EmrB/QacA subfamily [Burkholderia phytofirmans PsJN] Length = 531 Score = 713 bits (1841), Expect = 0.0, Method: Composition-based stats. Identities = 373/530 (70%), Positives = 446/530 (84%), Gaps = 2/530 (0%) Query: 23 MALHTDAAHSSGQVLPFRESLLATLGICFVIMLVALDQTIVGTALPTIVAELKGFDLYAW 82 MA+HT A HSSGQVLPFRESLLA LGI FV MLVALDQT+VGTALPTIVAELKGF+LYAW Sbjct: 1 MAVHTAAHHSSGQVLPFRESLLAMLGISFVTMLVALDQTVVGTALPTIVAELKGFELYAW 60 Query: 83 VATAYLLTSVITVPIFGRLGDYFGRKPFVIASIVVFVGASALCGMANSMLFLVLARGLQG 142 VAT+YLLTSVITVPIFGRLGDY+GRKPFVIASIVVF AS LCGMAN+MLFLVLARGLQG Sbjct: 61 VATSYLLTSVITVPIFGRLGDYYGRKPFVIASIVVFTAASVLCGMANNMLFLVLARGLQG 120 Query: 143 IGGGMLVGTCFASIADLFPDPRVRLRWQIILSASFGIATAVGPSLGGFLTQGLGWRWVFY 202 IGGGMLVGT FA I DLFPD VRLRWQ+++S++FGIA AVGPSLGGFLTQ GWR VFY Sbjct: 121 IGGGMLVGTAFACIPDLFPDSVVRLRWQVLMSSAFGIANAVGPSLGGFLTQYYGWRSVFY 180 Query: 203 CNLPIGVLSLYFVWRFVPHIRHMQHAGKMRLDWPGALLISLSLGSLQLLVELLPKRGITG 262 NLP+G+LSL+FVWRF+PH+RH++H GKMRLDWPGA+LI+++LGSLQL VELLPK G+T Sbjct: 181 VNLPVGLLSLFFVWRFLPHLRHVEHEGKMRLDWPGAVLIAVALGSLQLFVELLPKHGVTL 240 Query: 263 GMMVLLAVSVAAFYALWRWEQRAAQPILPFEMMRDKALASLFVLSVLAGFAMFSLLMYAP 322 G + LL +SVA+ YALW+WE+R ILP +M R+++LA+LF L+VL GF+MFSLL YAP Sbjct: 241 GAIALLVLSVASAYALWQWEKRCPTAILPVDMFRNRSLAALFTLAVLGGFSMFSLLFYAP 300 Query: 323 LLFQGGFGLSPREAGLLITPLVACITVASIVNGRIITRIPNPNLMMNLGFALIAASCLGV 382 LLFQGGFG+SP+EAGL+ITPLV IT+ SI NGRI++R+ NPNLM+ +GF L+A +CLGV Sbjct: 301 LLFQGGFGMSPKEAGLVITPLVVFITIGSIANGRIVSRVRNPNLMLYIGFTLLALACLGV 360 Query: 383 VLCDRTTGNGFLLTVMLAGGFGLGLVLPNLTVFAQQAAAREHLGIATALLQSLRMIGGML 442 V+ R L++ M+ GG GLG V+PNLT+FAQQ A REHLGIATALLQSLRMIGGM+ Sbjct: 361 VVATRAMPQWLLMSFMIVGGLGLGFVMPNLTIFAQQTAGREHLGIATALLQSLRMIGGMI 420 Query: 443 GTAITGTLVSQMYGAGVQKALEGDHAAQWLKDFSDPEVLVNHDIQSVLLAQLMQAGHDGS 502 GTA+TGTLVS MY +GV+ AL+ DHA+QWL D DP++L+N D Q+ LL QL AGH+G+ Sbjct: 421 GTALTGTLVSHMYASGVRSALDNDHASQWLADLGDPQILINRDAQATLLGQLTHAGHNGA 480 Query: 503 ALLEAAREALVGAIHMGIAIAIVAALAGLWMVRRVPPIRFDQDKKVEPVM 552 LLE AREALV AIH+G+A+A + A +W RRVPPI+ +K+EPV+ Sbjct: 481 MLLETAREALVSAIHLGLAMAAIIAAVSVWQSRRVPPIKL--QRKLEPVI 528 >ref|YP_003905651.1| major facilitator superfamily protein [Burkholderia sp. CCGE1003] gb|ADN56360.1| major facilitator superfamily MFS_1 [Burkholderia sp. CCGE1003] Length = 531 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 365/530 (68%), Positives = 444/530 (83%), Gaps = 2/530 (0%) Query: 23 MALHTDAAHSSGQVLPFRESLLATLGICFVIMLVALDQTIVGTALPTIVAELKGFDLYAW 82 MA+HT A HSSGQVLPFRESLL+ LGI FV MLVALDQT+VGTALPTIVAELKGF+LYAW Sbjct: 1 MAVHTAAHHSSGQVLPFRESLLSMLGISFVTMLVALDQTVVGTALPTIVAELKGFELYAW 60 Query: 83 VATAYLLTSVITVPIFGRLGDYFGRKPFVIASIVVFVGASALCGMANSMLFLVLARGLQG 142 VAT+YLLTSVITVPIFGRLGDY+GRKPFVIASIVVF GAS LCG+A++MLFLVLARGLQG Sbjct: 61 VATSYLLTSVITVPIFGRLGDYYGRKPFVIASIVVFTGASVLCGVADNMLFLVLARGLQG 120 Query: 143 IGGGMLVGTCFASIADLFPDPRVRLRWQIILSASFGIATAVGPSLGGFLTQGLGWRWVFY 202 IGGGMLVGT FA I DLFPD VRLRWQ+++S++FGIA AVGPSLGGFLTQ GWR VFY Sbjct: 121 IGGGMLVGTAFACIPDLFPDSVVRLRWQVLMSSAFGIANAVGPSLGGFLTQYYGWRSVFY 180 Query: 203 CNLPIGVLSLYFVWRFVPHIRHMQHAGKMRLDWPGALLISLSLGSLQLLVELLPKRGITG 262 NLP+G+LSL+FVWRF+PH+RH++H GKMRLDWPGA LI+++LGSLQL VELLPK G++ Sbjct: 181 VNLPVGMLSLFFVWRFLPHLRHVEHEGKMRLDWPGAALIAVALGSLQLFVELLPKHGLSW 240 Query: 263 GMMVLLAVSVAAFYALWRWEQRAAQPILPFEMMRDKALASLFVLSVLAGFAMFSLLMYAP 322 G LL +SVA+ YALW+WE+R ILP +M R+++LA+LF L+VL GF MFSLL YAP Sbjct: 241 GACALLVLSVASAYALWQWEKRCPTAILPVDMFRNRSLAALFTLAVLGGFTMFSLLFYAP 300 Query: 323 LLFQGGFGLSPREAGLLITPLVACITVASIVNGRIITRIPNPNLMMNLGFALIAASCLGV 382 LLFQGGFG+SP+EAG++ITPLV IT+ SI NGR+++R+ NPNLM+ +GF L+A +C+G Sbjct: 301 LLFQGGFGMSPKEAGVVITPLVVFITIGSIANGRVVSRVRNPNLMLYVGFTLLALACVGA 360 Query: 383 VLCDRTTGNGFLLTVMLAGGFGLGLVLPNLTVFAQQAAAREHLGIATALLQSLRMIGGML 442 V+ R+ + L++ M+ GG GLG V+PNLT+FAQQ A REHLGIATALLQSLRMIGGM+ Sbjct: 361 VIATRSMPHWLLMSFMVLGGLGLGFVMPNLTIFAQQTAGREHLGIATALLQSLRMIGGMI 420 Query: 443 GTAITGTLVSQMYGAGVQKALEGDHAAQWLKDFSDPEVLVNHDIQSVLLAQLMQAGHDGS 502 GTA+TGTLVS MY +GV+ ALE D A+QW D SDP++L+NH+ Q+ LL QL AGH+G+ Sbjct: 421 GTALTGTLVSHMYASGVRSALERDRASQWFGDLSDPQILINHEAQASLLGQLAHAGHNGA 480 Query: 503 ALLEAAREALVGAIHMGIAIAIVAALAGLWMVRRVPPIRFDQDKKVEPVM 552 LLE ARE LV AIH G+A+A + A+ +W RRVPPI+ +K+EPV+ Sbjct: 481 MLLETARETLVAAIHFGLAMAAIIAVVSVWQSRRVPPIKL--QRKLEPVI 528 >ref|YP_556989.1| major facilitator superfamily multidrug efflux transporter [Burkholderia xenovorans LB400] gb|ABE28937.1| major facilitator superfamily (MFS) multidrug efflux pump, EmrB/QacA subfamily [Burkholderia xenovorans LB400] Length = 531 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 372/530 (70%), Positives = 443/530 (83%), Gaps = 2/530 (0%) Query: 23 MALHTDAAHSSGQVLPFRESLLATLGICFVIMLVALDQTIVGTALPTIVAELKGFDLYAW 82 MA+HT A HSSGQVLPFRESLLA LGI FV MLVALDQT+VGTALPTIVAELKGF+LYAW Sbjct: 1 MAVHTAAHHSSGQVLPFRESLLAMLGISFVTMLVALDQTVVGTALPTIVAELKGFELYAW 60 Query: 83 VATAYLLTSVITVPIFGRLGDYFGRKPFVIASIVVFVGASALCGMANSMLFLVLARGLQG 142 VAT+YLLTSVITVPIFGRLGDY+GRKPFVIASIVVF GAS LCG AN+MLFLVLARGLQG Sbjct: 61 VATSYLLTSVITVPIFGRLGDYYGRKPFVIASIVVFTGASVLCGAANNMLFLVLARGLQG 120 Query: 143 IGGGMLVGTCFASIADLFPDPRVRLRWQIILSASFGIATAVGPSLGGFLTQGLGWRWVFY 202 IGGGMLVGT FA I DLFPD VRLRWQ+++S++FGIA AVGPSLGGFLTQ GWR VFY Sbjct: 121 IGGGMLVGTAFACIPDLFPDSVVRLRWQVVMSSAFGIANAVGPSLGGFLTQYYGWRSVFY 180 Query: 203 CNLPIGVLSLYFVWRFVPHIRHMQHAGKMRLDWPGALLISLSLGSLQLLVELLPKRGITG 262 NLP+G+LSL+FVWRF+PH+RH++H GKMRLDWPGA+LI+++LGSLQL VELLPK G+T Sbjct: 181 VNLPVGLLSLFFVWRFLPHLRHVEHEGKMRLDWPGAVLIAVALGSLQLFVELLPKHGVTL 240 Query: 263 GMMVLLAVSVAAFYALWRWEQRAAQPILPFEMMRDKALASLFVLSVLAGFAMFSLLMYAP 322 + LLA+S A+ YALW+WE+R ILP +M R+++LA+LF L+VL GF MFSLL YAP Sbjct: 241 SVAALLALSAASAYALWQWEKRCPTAILPVDMFRNRSLAALFTLAVLGGFTMFSLLFYAP 300 Query: 323 LLFQGGFGLSPREAGLLITPLVACITVASIVNGRIITRIPNPNLMMNLGFALIAASCLGV 382 LLFQGGFG+SP+EAGL+ITPLV IT+ SI NGRI++R+ NPNLM+ +GF L+A +CLGV Sbjct: 301 LLFQGGFGMSPKEAGLVITPLVVFITIGSIANGRIVSRVRNPNLMLYVGFTLLALACLGV 360 Query: 383 VLCDRTTGNGFLLTVMLAGGFGLGLVLPNLTVFAQQAAAREHLGIATALLQSLRMIGGML 442 V+ R L+ M+ GG GLG V+PNLT+FAQQ A REHLGIATALLQSLRMIGGML Sbjct: 361 VVATRAMPQWLLMAFMVVGGLGLGFVMPNLTIFAQQTAGREHLGIATALLQSLRMIGGML 420 Query: 443 GTAITGTLVSQMYGAGVQKALEGDHAAQWLKDFSDPEVLVNHDIQSVLLAQLMQAGHDGS 502 GTA+TGTLVS MY +GV+ ALE DHA+ W D DP++L+N D Q+ LL QL AGH+G+ Sbjct: 421 GTALTGTLVSHMYASGVRSALENDHASHWFADLGDPQILINRDAQTTLLGQLAHAGHNGA 480 Query: 503 ALLEAAREALVGAIHMGIAIAIVAALAGLWMVRRVPPIRFDQDKKVEPVM 552 LLE+AREALV AIH+G+A+A + A+ +W RRVPPI+ +K+EPV+ Sbjct: 481 MLLESAREALVSAIHLGLAMAAIIAVVSVWQSRRVPPIKL--QRKLEPVI 528