BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2270.p         (341 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775272.1| hypothetical protein Hsero_1854 [Herbaspiril...   323   2e-86
ref|YP_003050303.1| hypothetical protein Msip34_0528 [Methylovor...   128   1e-27
ref|YP_004038971.1| hypothetical protein MPQ_0553 [Methylovorus ...   125   1e-26

>ref|YP_003775272.1| hypothetical protein Hsero_1854 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63364.1| hypothetical protein Hsero_1854 [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 154/196 (78%), Positives = 169/196 (86%)

Query: 146 GHAEAEGRLFRPLGENLMISPPPGWRLAYMDGDPEGNYVVDFLPPNEAHDSWREGYMGVQ 205
             AEAEGRLF+P GENLMISPP GWRLAYMDGDPEG+YVVDFLP NEAHDSWREGYM VQ
Sbjct: 25  AQAEAEGRLFQPTGENLMISPPAGWRLAYMDGDPEGDYVVDFLPQNEAHDSWREGYMSVQ 84

Query: 206 RRGYPDAGLVANIQARNLTVAQVALTEVMQGAQRNCPGRFVAMAQKDGSTNNIPVSVSGG 265
           RR +P+A L  NI+ARNLT+ QVA++EVMQ AQR CPGRFV M QKD  TNNIP SVSGG
Sbjct: 85  RRTFPEAALRDNIRARNLTMPQVAISEVMQIAQRKCPGRFVPMGQKDSLTNNIPTSVSGG 144

Query: 266 FCDRTGPVAPYGEGTVLAVYQGKRQLFVVQFSWRPPTENAFKQYPYRISPAALQQYLDLL 325
           FCDR GP APYGEG+V+AV++GK +LFVVQFSWRP TEN  KQ+ YRISPA LQQ+LDLL
Sbjct: 145 FCDRLGPSAPYGEGSVMAVFEGKERLFVVQFSWRPSTENELKQFAYRISPARLQQFLDLL 204

Query: 326 NAAALCGGPDEGKCPN 341
           NAA LCGGPDEGKCPN
Sbjct: 205 NAATLCGGPDEGKCPN 220


>ref|YP_003050303.1| hypothetical protein Msip34_0528 [Methylovorus glucosetrophus
           SIP3-4]
 gb|ACT49776.1| hypothetical protein Msip34_0528 [Methylovorus glucosetrophus
           SIP3-4]
          Length = 220

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 118/213 (55%), Gaps = 7/213 (3%)

Query: 129 RLLAPLLASVLAMLPLAGHAEAE---GRLFRPLGENLMISPPPGWRLAYMDGDPEGNYVV 185
           R++  L+A+    L  A  A AE   G  F   GE L ++PP GW++ +M+GDP+G Y V
Sbjct: 3   RIICILMAAACISLQSALPAFAETVVGMPFNVKGERLDVTPPAGWKIVWMEGDPKGEYFV 62

Query: 186 DFLPPNEAHDSWREGYMGVQRRGYPDAGLVANIQARNLTVAQVALTEVMQGAQRNCPGRF 245
           ++ PP E  ++W+ G++ + R+ YP A  +  I+   L VA VAL  +++    +C G +
Sbjct: 63  EYAPPGEDVETWKTGHLSIIRKPYPSAQTMKEIRDAKLKVADVALIGMVKRLSGSCAG-Y 121

Query: 246 VAMAQKDGSTNNIPVSVSGGFCDRTGPVAPYGEGTVLAVYQGKRQLFVVQFSWRPPTENA 305
             +  +  + N +  ++ GG+C +    AP GEG  +A Y+ K  ++ VQ+SWRP +E  
Sbjct: 122 EEITMRTTTANGLYSALGGGYCGKPSENAPLGEGAFVAFYESKNFIYKVQYSWRPQSEAE 181

Query: 306 FKQYPYRISPAALQQYLDLLNAAALCGGPDEGK 338
            +   + I  A  + Y + + +AALC   DE K
Sbjct: 182 KQSSLWAIDAAHAKLYRESMKSAALC---DESK 211


>ref|YP_004038971.1| hypothetical protein MPQ_0553 [Methylovorus sp. MP688]
 gb|ADQ83735.1| conserved hypothetical protein [Methylovorus sp. MP688]
          Length = 193

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 106/187 (56%), Gaps = 4/187 (2%)

Query: 152 GRLFRPLGENLMISPPPGWRLAYMDGDPEGNYVVDFLPPNEAHDSWREGYMGVQRRGYPD 211
           G  F   GE L ++PP GW++ +M+GDP+G Y V++ PP E  ++W+ G++ + R+ YP 
Sbjct: 2   GMPFNVKGERLDVTPPAGWKIVWMEGDPKGEYFVEYAPPGEDVETWKTGHLSIIRKPYPS 61

Query: 212 AGLVANIQARNLTVAQVALTEVMQGAQRNCPGRFVAMAQKDGSTNNIPVSVSGGFCDRTG 271
           A  +  I+   L VA VAL  +++    +C G +  +  +  + N +  ++ GG+C +  
Sbjct: 62  AQTMKEIRDAKLKVADVALIGMVKRLSGSCAG-YEEITMRTTTANGLYSALGGGYCGKPS 120

Query: 272 PVAPYGEGTVLAVYQGKRQLFVVQFSWRPPTENAFKQYPYRISPAALQQYLDLLNAAALC 331
             AP GEG  +A Y+ K  ++ VQ+SWRP +E   +   + I  A  + Y + + +AALC
Sbjct: 121 ENAPLGEGAFVAFYESKNFIYKVQYSWRPQSEAEKQSSLWAIDAAHAKLYRESMKSAALC 180

Query: 332 GGPDEGK 338
              DE K
Sbjct: 181 ---DESK 184