BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2267.p         (153 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775269.1| transcription regulator protein [Herbaspiril...   224   2e-57
ref|YP_001354616.1| MarR family transcriptional regulator [Janth...   171   2e-41
ref|YP_001631798.1| MarR family transcriptional regulator [Borde...   154   4e-36
emb|CBJ40785.1| Organic hydroperoxide resistance transcriptional...   153   7e-36
ref|YP_786960.1| MarR family transcriptional regulator [Bordetel...   151   3e-35

>ref|YP_003775269.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63361.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 153

 Score =  224 bits (572), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 142/153 (92%), Positives = 149/153 (97%)

Query: 1   MNSKTDKRKSAPLLDAQLCFALYSTSLSMSKLYRKLLRNMGITYSQYLVLMVLWEQDQLT 60
           M SKTDKRK+APLLDAQLCFALYSTSLSMSKLYRKLLR++GITYSQYLVLMVLWEQDQLT
Sbjct: 1   MVSKTDKRKAAPLLDAQLCFALYSTSLSMSKLYRKLLRDLGITYSQYLVLMVLWEQDQLT 60

Query: 61  VSDIGERLVLDSATLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGDKLREQAVELPR 120
           VS+IGERLVLDSATLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGD LRE+AVELPR
Sbjct: 61  VSEIGERLVLDSATLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGDTLREKAVELPR 120

Query: 121 EVLRATESTAAELTAMKEELMALRARLHKNTGE 153
           EVLRATESTAAEL A+KEELM LRARLHKNTG+
Sbjct: 121 EVLRATESTAAELAAIKEELMQLRARLHKNTGD 153


>ref|YP_001354616.1| MarR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gb|ABR90503.1| transcriptional regulator, MarR family [Janthinobacterium sp.
           Marseille]
          Length = 163

 Score =  171 bits (434), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 101/147 (68%), Positives = 122/147 (82%)

Query: 1   MNSKTDKRKSAPLLDAQLCFALYSTSLSMSKLYRKLLRNMGITYSQYLVLMVLWEQDQLT 60
           M SK+ K  +AP LD QLCFALYSTSL+MSK+YRKLL  +G+TYSQYLV+MVLWEQD+LT
Sbjct: 13  MKSKSTKPDNAPRLDNQLCFALYSTSLAMSKVYRKLLPRLGLTYSQYLVMMVLWEQDELT 72

Query: 61  VSDIGERLVLDSATLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGDKLREQAVELPR 120
           VSDIGERL LDSATLTPLLKRMEA  L+TR RAA+DERQV+I+LT  GD LR +A+E+  
Sbjct: 73  VSDIGERLFLDSATLTPLLKRMEAAELITRVRAANDERQVIITLTKSGDALRSKALEMQG 132

Query: 121 EVLRATESTAAELTAMKEELMALRARL 147
           EVL AT  +  E+ AMKE+L+ LR++L
Sbjct: 133 EVLCATACSLDEVVAMKEQLVTLRSKL 159


>ref|YP_001631798.1| MarR family transcriptional regulator [Bordetella petrii DSM 12804]
 emb|CAP43530.1| transcriptional regulator, MarR family [Bordetella petrii]
          Length = 157

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 93/152 (61%), Positives = 116/152 (76%), Gaps = 2/152 (1%)

Query: 1   MNSKTDKRKSAP--LLDAQLCFALYSTSLSMSKLYRKLLRNMGITYSQYLVLMVLWEQDQ 58
           M  +     +AP  LLD QLCFAL+ST+L+M+K+YRKLLR++G+TY QYLV+MVLWEQDQ
Sbjct: 5   MTRRRSSSATAPSLLLDEQLCFALHSTTLAMNKVYRKLLRSLGLTYPQYLVMMVLWEQDQ 64

Query: 59  LTVSDIGERLVLDSATLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGDKLREQAVEL 118
           LT+SDIG +L LDSATLTPLLKRMEA GLVTR RA  DERQV++SLT  G  L+++A ++
Sbjct: 65  LTLSDIGRKLFLDSATLTPLLKRMEAAGLVTRLRAEQDERQVIVSLTRAGRDLKQKAAQV 124

Query: 119 PREVLRATESTAAELTAMKEELMALRARLHKN 150
           P  VL ATE    +L A+K +L  LR RL  N
Sbjct: 125 PVSVLCATECAPDDLAALKAQLDHLRGRLMAN 156


>emb|CBJ40785.1| Organic hydroperoxide resistance transcriptional regulator, MarR
           family [Ralstonia solanacearum CMR15]
          Length = 153

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 84/149 (56%), Positives = 113/149 (75%)

Query: 4   KTDKRKSAPLLDAQLCFALYSTSLSMSKLYRKLLRNMGITYSQYLVLMVLWEQDQLTVSD 63
           KT  + S   LD QLCFALYST + ++K+YR LL+ +G+TY QYLV++VLWE+D LTVS+
Sbjct: 5   KTASQYSNLALDQQLCFALYSTMIGLNKVYRGLLKPLGLTYPQYLVMLVLWERDALTVSE 64

Query: 64  IGERLVLDSATLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGDKLREQAVELPREVL 123
           IGERL LDS TLTP+LKR+EA GL+ R+R+ +DERQV++SLTAEG +L+ +A ++P  V 
Sbjct: 65  IGERLFLDSPTLTPMLKRLEAAGLIARQRSDADERQVIVSLTAEGQRLKHRAKDVPGCVA 124

Query: 124 RATESTAAELTAMKEELMALRARLHKNTG 152
            A E   AEL A++ +L  +RARL KN  
Sbjct: 125 AAMECVPAELEALRTQLTGMRARLFKNAA 153


>ref|YP_786960.1| MarR family transcriptional regulator [Bordetella avium 197N]
 emb|CAJ50057.1| MarR-family transcriptional regulator [Bordetella avium 197N]
          Length = 156

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 88/147 (59%), Positives = 108/147 (73%)

Query: 1   MNSKTDKRKSAPLLDAQLCFALYSTSLSMSKLYRKLLRNMGITYSQYLVLMVLWEQDQLT 60
           M +KT      PLLD QLCFAL+STSL+MSK+YRKLL  +G+TYSQYLV+MVLWEQD L 
Sbjct: 4   MKTKTSHSSRGPLLDKQLCFALHSTSLAMSKVYRKLLGPLGLTYSQYLVMMVLWEQDGLI 63

Query: 61  VSDIGERLVLDSATLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGDKLREQAVELPR 120
           +SDIG RL LDSATLTPLLKRME  GL+ R+R  SDERQV++SLT  G  L+EQA  +P+
Sbjct: 64  LSDIGRRLFLDSATLTPLLKRMEGAGLLLRQRDPSDERQVIVSLTPRGRALQEQAQSVPQ 123

Query: 121 EVLRATESTAAELTAMKEELMALRARL 147
            + RA   ++ E+  +K  L  LR  L
Sbjct: 124 GIARAAACSSEEVELLKAHLERLREAL 150