BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2258.p (218 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08276517.1| transcriptional regulator, GntR family [Oxalo... 281 5e-74 ref|YP_003911174.1| GntR family transcriptional regulator [Burkh... 219 2e-55 ref|YP_001860702.1| GntR family transcriptional regulator [Burkh... 219 2e-55 ref|ZP_02882906.1| transcriptional regulator, GntR family [Burkh... 219 2e-55 ref|YP_003884327.1| GntR family transcriptional regulator [Dicke... 180 1e-43 >ref|ZP_08276517.1| transcriptional regulator, GntR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF30013.1| transcriptional regulator, GntR family [Oxalobacteraceae bacterium IMCC9480] Length = 251 Score = 281 bits (719), Expect = 5e-74, Method: Composition-based stats. Identities = 137/218 (62%), Positives = 170/218 (77%), Gaps = 2/218 (0%) Query: 1 MRLLPGDQITETEIAAYFKVSRTPVRQALQRLQNDGLMQGYVRGGWEVVPIDFKRFSDLY 60 +RLLPGDQ+TE++IAAYF VSRTPVR+ALQRLQ DGLMQGYVRGGWEVVP+DFKR+ DL+ Sbjct: 32 LRLLPGDQVTESDIAAYFDVSRTPVREALQRLQRDGLMQGYVRGGWEVVPVDFKRYEDLF 91 Query: 61 EMRKLIETHAVRRLCAQAG--DQSVLAGLRATWCVAAEAREPDGPKAALLDEVFHQTLVR 118 EMR++IE +AV RLC + DQS++ GL+ TWC + R DG + A LDE FHQTLVR Sbjct: 92 EMRRVIELYAVTRLCQEGVGIDQSLIDGLQLTWCCPVDQRLVDGLQVATLDEGFHQTLVR 151 Query: 119 AAGNQEMAESFDRLTDRIRIVRRLDFLYGDCLHSTYEEHAAILDSIAAGDAEGAMRLMGE 178 A GN EMA +FDRLTDR+RIVRRLDFLYGDC+ TY+EHAAIL +I D+ A+ LM Sbjct: 152 ATGNLEMATTFDRLTDRVRIVRRLDFLYGDCVQLTYDEHAAILGAITTRDSAAALGLMTA 211 Query: 179 HIDGSHAEVNQITLHRLHSARATATTKPPAYVSVRVRR 216 HI+ SHA V Q+TLH LH+ R A+ + Y+ V+++R Sbjct: 212 HIEDSHASVRQLTLHHLHNVRVGASAERLPYLPVKMQR 249 >ref|YP_003911174.1| GntR family transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN61883.1| transcriptional regulator, GntR family [Burkholderia sp. CCGE1003] Length = 286 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 120/220 (54%), Positives = 146/220 (66%), Gaps = 5/220 (2%) Query: 1 MRLLPGDQITETEIAAYFKVSRTPVRQALQRLQNDGLMQGYVRGGWEVVPIDFKRFSDLY 60 MRLLPGD++TE IA F VSRTP R+ALQRLQ+DGLM+GYVRGGWEVVPIDFKRF DLY Sbjct: 64 MRLLPGDRLTEGSIADRFGVSRTPAREALQRLQSDGLMRGYVRGGWEVVPIDFKRFEDLY 123 Query: 61 EMRKLIETHAVRRLCA-----QAGDQSVLAGLRATWCVAAEAREPDGPKAALLDEVFHQT 115 EMRKLIET++V RL + +L L W V R DG + LDE FH+ Sbjct: 124 EMRKLIETYSVSRLFGPDRSLSETARQMLDRLDGIWNVPEAQRVRDGREMVALDEAFHEA 183 Query: 116 LVRAAGNQEMAESFDRLTDRIRIVRRLDFLYGDCLHSTYEEHAAILDSIAAGDAEGAMRL 175 LV AAGN E+ + R+TDRIR+VRRLD +YGDC+ TY+EH AIL +I A+ A+ L Sbjct: 184 LVSAAGNAELTAAMQRVTDRIRVVRRLDLVYGDCIDETYDEHVAILAAIRDLAADRAVEL 243 Query: 176 MGEHIDGSHAEVNQITLHRLHSARATATTKPPAYVSVRVR 215 +G HI+GS AEV +T RL AR + Y R+R Sbjct: 244 LGRHIEGSRAEVRTLTTERLQRARTASEPHSAPYAPPRLR 283 >ref|YP_001860702.1| GntR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC73656.1| transcriptional regulator, GntR family [Burkholderia phymatum STM815] Length = 260 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 119/221 (53%), Positives = 147/221 (66%), Gaps = 4/221 (1%) Query: 1 MRLLPGDQITETEIAAYFKVSRTPVRQALQRLQNDGLMQGYVRGGWEVVPIDFKRFSDLY 60 M LLPGD++TE IA F VSRTP R+ALQRLQ+DGLMQGYVRGGWEVVPID KRF DLY Sbjct: 39 MHLLPGDRLTEGAIAERFSVSRTPAREALQRLQSDGLMQGYVRGGWEVVPIDNKRFDDLY 98 Query: 61 EMRKLIETHAVRRLCAQ----AGDQSVLAGLRATWCVAAEAREPDGPKAALLDEVFHQTL 116 EMR++IET AVR+LC G +L L W V R DG K LDE FH L Sbjct: 99 EMRQMIETFAVRKLCDNEAPPPGLHPLLDTLDGVWKVGHARRITDGRKLVELDEAFHHAL 158 Query: 117 VRAAGNQEMAESFDRLTDRIRIVRRLDFLYGDCLHSTYEEHAAILDSIAAGDAEGAMRLM 176 + AAGN+E+ + R+TDRIR+VRRLD ++GD + TY+EHAAILD+I GD ++ L+ Sbjct: 159 IAAAGNEELTSTMQRVTDRIRVVRRLDLVHGDGIAETYDEHAAILDAIRRGDGAQSVELV 218 Query: 177 GEHIDGSHAEVNQITLHRLHSARATATTKPPAYVSVRVRRS 217 HI GS A V +T+ RL +AR + A+ R RR+ Sbjct: 219 SRHIGGSQASVRGLTIQRLLTARTATGREATAHAPARPRRT 259 >ref|ZP_02882906.1| transcriptional regulator, GntR family [Burkholderia graminis C4D1M] gb|EDT11190.1| transcriptional regulator, GntR family [Burkholderia graminis C4D1M] Length = 248 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 124/222 (55%), Positives = 148/222 (66%), Gaps = 5/222 (2%) Query: 1 MRLLPGDQITETEIAAYFKVSRTPVRQALQRLQNDGLMQGYVRGGWEVVPIDFKRFSDLY 60 MRLLPGD++TE IA F VSRTP R+ALQRLQ+DGLM+GYVRGGWEVVPID KRF DLY Sbjct: 26 MRLLPGDRLTEGSIAERFGVSRTPAREALQRLQSDGLMRGYVRGGWEVVPIDLKRFEDLY 85 Query: 61 EMRKLIETHAVRRLCAQAGD-----QSVLAGLRATWCVAAEAREPDGPKAALLDEVFHQT 115 EMRKLIET AV RL A Q VL L ATW V R DG + LDE FHQ Sbjct: 86 EMRKLIETFAVGRLVAADSSLSGSVQQVLDRLDATWKVPRAQRIRDGREMVALDEAFHQA 145 Query: 116 LVRAAGNQEMAESFDRLTDRIRIVRRLDFLYGDCLHSTYEEHAAILDSIAAGDAEGAMRL 175 LV AA N E++ + R+TDRIR++RRLD +YGDC+ TY+EH AILD+I + E ++ L Sbjct: 146 LVTAADNAELSAAMQRVTDRIRVMRRLDLVYGDCIDETYDEHIAILDAIRNRETERSVAL 205 Query: 176 MGEHIDGSHAEVNQITLHRLHSARATATTKPPAYVSVRVRRS 217 +G HI+GS +EV +T RL AR Y R RR+ Sbjct: 206 VGRHIEGSRSEVRGLTAERLQHARTAMEPHGAPYAPPRSRRT 247 >ref|YP_003884327.1| GntR family transcriptional regulator [Dickeya dadantii 3937] gb|ADM99770.1| Transcriptional regulator, GntR family [Dickeya dadantii 3937] Length = 238 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 102/203 (50%), Positives = 131/203 (64%), Gaps = 4/203 (1%) Query: 2 RLLPGDQITETEIAAYFKVSRTPVRQALQRLQNDGLMQGYVRGGWEVVPIDFKRFSDLYE 61 RLLPGD+ TE E+A VSRTP+RQAL RL+ +G + Y R GW+V P DF F +LY+ Sbjct: 36 RLLPGDRFTENELAERLSVSRTPIRQALFRLETEGFVSVYYRSGWQVKPFDFAYFEELYD 95 Query: 62 MRKLIETHAVRRLCAQAGDQ--SVLAGLRATWCVAAEAREPDGPKAALLDEVFHQTLVRA 119 +R ++E AV+RLC D ++L L W E R+ DG + + DE FH LV A Sbjct: 96 LRIVLEREAVQRLCLLPPDSCAALLQPLHQYWI--DEPRQDDGQQVSRQDEAFHLALVAA 153 Query: 120 AGNQEMAESFDRLTDRIRIVRRLDFLYGDCLHSTYEEHAAILDSIAAGDAEGAMRLMGEH 179 AGN+EMA +T++IRI+RRLDF D + +TY+EHAAIL +I A D+E A RL+ EH Sbjct: 154 AGNREMARVHRDVTEKIRIIRRLDFTRQDRIQATYQEHAAILQAILAQDSEQACRLLAEH 213 Query: 180 IDGSHAEVNQITLHRLHSARATA 202 I GS AEV ITLH L AR A Sbjct: 214 IAGSKAEVRNITLHLLQQARNQA 236