BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2256.p         (101 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775267.1| hypothetical protein Hsero_1849 [Herbaspiril...   189   9e-47
ref|ZP_03571876.1| conserved hypothetical protein [Burkholderia ...   120   5e-26
ref|ZP_02468734.1| hypothetical protein Bpse38_35584 [Burkholder...   119   2e-25
ref|ZP_03570248.1| RES domain superfamily [Burkholderia multivor...   118   3e-25
ref|ZP_03576891.1| RES domain protein [Burkholderia multivorans ...   117   4e-25

>ref|YP_003775267.1| hypothetical protein Hsero_1849 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63359.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 156

 Score =  189 bits (481), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 93/101 (92%), Positives = 98/101 (97%)

Query: 1   MAGLMPRARYYLIVLEAPDAELRKAYVPSLPPDWADITRDPASTAAIGQHWIEEGKHLMM 60
           MAGLMPRARYYLIVLEAPDAELRKAYVPSLPPDWADITRDPASTAAIGQHWIEEGKHLMM
Sbjct: 56  MAGLMPRARYYLIVLEAPDAELRKAYVPSLPPDWADITRDPASTAAIGQHWIEEGKHLMM 115

Query: 61  KVPSVVSPTDFNLLLNPLHAQMASVRVLEKKLFRFDARLFG 101
           KVPSVVSPTDFN+LLNPLH QM  ++V+EKKLF+FDARLFG
Sbjct: 116 KVPSVVSPTDFNVLLNPLHPQMPGIKVVEKKLFQFDARLFG 156


>ref|ZP_03571876.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
 ref|ZP_03578108.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 ref|ZP_03588316.1| RES domain superfamily [Burkholderia multivorans CGD1]
 gb|EED97264.1| RES domain superfamily [Burkholderia multivorans CGD1]
 gb|EEE07314.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gb|EEE13684.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
          Length = 157

 Score =  120 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 58/102 (56%), Positives = 75/102 (73%), Gaps = 1/102 (0%)

Query: 1   MAGLMPRARYYLIVLEAPDAELRKAYVPSLPPDWADITRDPASTAAIGQHWIEEGKHLMM 60
           M+G++P    +L+ LE PDA    A+ P LPPDWA +T DPASTA IG+ W+E+G+ L M
Sbjct: 56  MSGILPAGGLFLVTLEVPDAVYAGAFEPELPPDWATLTEDPASTARIGREWLEKGEQLAM 115

Query: 61  KVPSVVSPTDFNLLLNPLHAQM-ASVRVLEKKLFRFDARLFG 101
           +VPSVV PTDFNLLLNPLH    A+V+V+ K+ F+ D RLFG
Sbjct: 116 RVPSVVCPTDFNLLLNPLHPDFAATVKVISKEPFKLDPRLFG 157


>ref|ZP_02468734.1| hypothetical protein Bpse38_35584 [Burkholderia thailandensis
           MSMB43]
          Length = 126

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/101 (59%), Positives = 74/101 (73%)

Query: 1   MAGLMPRARYYLIVLEAPDAELRKAYVPSLPPDWADITRDPASTAAIGQHWIEEGKHLMM 60
           MAGL+P+  Y+L+ LE PDA    A  P+LP DWA++TR P STA IG+ W+E G HL M
Sbjct: 21  MAGLLPKGGYFLVTLEVPDAAYEAALAPALPDDWAELTRTPDSTAEIGRQWLEAGDHLAM 80

Query: 61  KVPSVVSPTDFNLLLNPLHAQMASVRVLEKKLFRFDARLFG 101
           +VPSVV PTDFNLLLNP+H  MA V+V++K LF  D RLF 
Sbjct: 81  RVPSVVCPTDFNLLLNPMHPDMAQVQVVDKALFAMDPRLFA 121


>ref|ZP_03570248.1| RES domain superfamily [Burkholderia multivorans CGD2M]
 gb|EEE16155.1| RES domain superfamily [Burkholderia multivorans CGD2M]
          Length = 157

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/102 (55%), Positives = 74/102 (72%), Gaps = 1/102 (0%)

Query: 1   MAGLMPRARYYLIVLEAPDAELRKAYVPSLPPDWADITRDPASTAAIGQHWIEEGKHLMM 60
           M+G++P    +L+ LE PDA    A+ P LPPDWA +T DPASTA IG+ W+E+G+ L M
Sbjct: 56  MSGILPAGGLFLVTLEVPDAVYEGAFEPELPPDWATLTEDPASTARIGREWLEKGEQLAM 115

Query: 61  KVPSVVSPTDFNLLLNPLHAQM-ASVRVLEKKLFRFDARLFG 101
           +VPSVV PTD NLLLNPLH    A+V+V+ K+ F+ D RLFG
Sbjct: 116 RVPSVVCPTDSNLLLNPLHPDFAATVKVISKEPFKLDPRLFG 157


>ref|ZP_03576891.1| RES domain protein [Burkholderia multivorans CGD2]
 gb|EEE08468.1| RES domain protein [Burkholderia multivorans CGD2]
          Length = 143

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/102 (55%), Positives = 74/102 (72%), Gaps = 1/102 (0%)

Query: 1   MAGLMPRARYYLIVLEAPDAELRKAYVPSLPPDWADITRDPASTAAIGQHWIEEGKHLMM 60
           M+G++P    +L+ LE PDA    A+ P LPPDWA +T DPASTA IG+ W+E+G+ L M
Sbjct: 42  MSGILPAGGLFLVTLEVPDAVYEGAFEPELPPDWATLTEDPASTARIGREWLEKGEQLAM 101

Query: 61  KVPSVVSPTDFNLLLNPLHAQM-ASVRVLEKKLFRFDARLFG 101
           +VPSVV PTD NLLLNPLH    A+V+V+ K+ F+ D RLFG
Sbjct: 102 RVPSVVCPTDSNLLLNPLHPDFAATVKVISKEPFKLDPRLFG 143