BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2255.p         (155 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775266.1| hypothetical protein Hsero_1848 [Herbaspiril...   236   9e-61
ref|YP_001109907.1| hypothetical protein Bcep1808_7247 [Burkhold...   172   2e-41
ref|ZP_02888125.1| conserved hypothetical protein [Burkholderia ...   146   9e-34
ref|YP_001815840.1| hypothetical protein BamMC406_5846 [Burkhold...   140   9e-32
ref|ZP_03588317.1| conserved hypothetical protein [Burkholderia ...   138   2e-31

>ref|YP_003775266.1| hypothetical protein Hsero_1848 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63358.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 155

 Score =  236 bits (602), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 135/155 (87%), Positives = 144/155 (92%)

Query: 1   MATRATVDAAASKRSPGLGAKPRDFERFARMDPISQGRTIRDGMDAIIAERVARELLQIP 60
           M TR++     SK S GLGA+P DF+RFA MDPISQGRTIRDGMDAIIAERVARELLQIP
Sbjct: 1   MTTRSSSIRVVSKGSQGLGARPNDFQRFANMDPISQGRTIRDGMDAIIAERVARELLQIP 60

Query: 61  LQTLLSGLGLPSSTILRKISRKERLSGSESDRIARVLYIREQAADVFEDEDLAAQWMRRG 120
           LQTLL+GLGLPSSTILRKISRKERLSGSESDRIARVLYIREQAADVFEDE+LAA+WMRR 
Sbjct: 61  LQTLLAGLGLPSSTILRKISRKERLSGSESDRIARVLYIREQAADVFEDEELAAEWMRRA 120

Query: 121 NAALGGLTPLEVLDTQPGYDRVRDILARIAFGVAA 155
           NAALGG+TPLEVLDTQPGYDRVRDIL+RIAFGVAA
Sbjct: 121 NAALGGMTPLEVLDTQPGYDRVRDILSRIAFGVAA 155


>ref|YP_001109907.1| hypothetical protein Bcep1808_7247 [Burkholderia vietnamiensis G4]
 gb|ABO60126.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
          Length = 166

 Score =  172 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 104/155 (67%), Positives = 129/155 (83%), Gaps = 1/155 (0%)

Query: 1   MATRATV-DAAASKRSPGLGAKPRDFERFARMDPISQGRTIRDGMDAIIAERVARELLQI 59
           +A R+T   A A   S GLGA+  DFE F +M P++Q +TIRDGM AII ERVA+ELL +
Sbjct: 11  LAKRSTSRGAGAFVGSNGLGAQQHDFEVFRKMAPLAQRQTIRDGMQAIIVERVAKELLHV 70

Query: 60  PLQTLLSGLGLPSSTILRKISRKERLSGSESDRIARVLYIREQAADVFEDEDLAAQWMRR 119
           PLQTLL+GLGLP+STILRKIS++ERLSG+ESDR+ARVLY+ EQA++VFE+  LAA+WM+R
Sbjct: 71  PLQTLLTGLGLPTSTILRKISKEERLSGAESDRVARVLYVFEQASEVFENPALAAEWMQR 130

Query: 120 GNAALGGLTPLEVLDTQPGYDRVRDILARIAFGVA 154
            NA LGGL PLEVLD+QPGYDRVRD+L R+ FG+A
Sbjct: 131 PNAELGGLKPLEVLDSQPGYDRVRDLLLRVTFGIA 165


>ref|ZP_02888125.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
 gb|EDT06435.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
          Length = 167

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 92/141 (65%), Positives = 107/141 (75%)

Query: 15  SPGLGAKPRDFERFARMDPISQGRTIRDGMDAIIAERVARELLQIPLQTLLSGLGLPSST 74
           S GLGA   DF+ F RM P+SQ R I +G DA+I ERVARELL +P+Q+LLS L LPSST
Sbjct: 27  SNGLGAGKGDFDTFGRMAPMSQRRAIAEGFDAVIIERVARELLGVPVQSLLSALSLPSST 86

Query: 75  ILRKISRKERLSGSESDRIARVLYIREQAADVFEDEDLAAQWMRRGNAALGGLTPLEVLD 134
           ILRKI++ +RLS  ESDR+ARVLY+ + A D+FED + AA WM R NA L GL PLEVLD
Sbjct: 87  ILRKIAKHDRLSQGESDRVARVLYVLDLATDLFEDSERAAAWMSRANAELDGLKPLEVLD 146

Query: 135 TQPGYDRVRDILARIAFGVAA 155
            QPGYDRVRDIL R  FGV A
Sbjct: 147 VQPGYDRVRDILNRARFGVGA 167


>ref|YP_001815840.1| hypothetical protein BamMC406_5846 [Burkholderia ambifaria MC40-6]
 gb|ACB68287.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
          Length = 167

 Score =  140 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 91/152 (59%), Positives = 108/152 (71%), Gaps = 3/152 (1%)

Query: 4   RATVDAAASKRSPGLGAKPRDFERFARMDPISQGRTIRDGMDAIIAERVARELLQIPLQT 63
           RA   AA   R    GA   DF  F  M P+SQ R I DG DA I ERVAR+LL + +Q+
Sbjct: 19  RAAKHAATPAR---FGANQGDFAAFLHMAPMSQRRIIADGFDATIVERVARDLLGVSVQS 75

Query: 64  LLSGLGLPSSTILRKISRKERLSGSESDRIARVLYIREQAADVFEDEDLAAQWMRRGNAA 123
           LL+ L LPSSTILRKI++++RLS SESDR+ARVLY+ + A +VFED+  AA+WM RGN  
Sbjct: 76  LLTSLSLPSSTILRKIAKEDRLSQSESDRLARVLYVHQLATEVFEDDTRAAEWMNRGNVE 135

Query: 124 LGGLTPLEVLDTQPGYDRVRDILARIAFGVAA 155
           L G  P+EVLD QPGYDRVRDIL R  FGVAA
Sbjct: 136 LDGHKPIEVLDVQPGYDRVRDILNRAQFGVAA 167


>ref|ZP_03588317.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
 gb|EED97265.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
          Length = 125

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 86/125 (68%), Positives = 102/125 (81%)

Query: 31  MDPISQGRTIRDGMDAIIAERVARELLQIPLQTLLSGLGLPSSTILRKISRKERLSGSES 90
           M P+ Q RTI DG +A+I ERVARELL+IP+Q+LLS L LPSSTILRKI+ ++RLS SES
Sbjct: 1   MAPLGQRRTIADGFEAVIVERVARELLRIPVQSLLSALSLPSSTILRKIANEDRLSQSES 60

Query: 91  DRIARVLYIREQAADVFEDEDLAAQWMRRGNAALGGLTPLEVLDTQPGYDRVRDILARIA 150
           DRIARVLY+ + A ++FED+D AA+WM RGNA L GL P+EVLD QPGYDRVRDIL R  
Sbjct: 61  DRIARVLYVLDLAVELFEDKDRAAEWMTRGNAELDGLKPIEVLDVQPGYDRVRDILNRAL 120

Query: 151 FGVAA 155
           FGV A
Sbjct: 121 FGVTA 125