BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2251.p (314 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775263.1| dipeptide/oligopeptide/nickel ABC transporte... 526 e-147 ref|YP_001898831.1| binding-protein-dependent transport systems ... 447 e-123 ref|ZP_00945841.1| DppC [Ralstonia solanacearum UW551] >gi|20774... 447 e-123 ref|YP_002981282.1| binding-protein-dependent transport systems ... 446 e-123 gb|AEG69273.1| d-ala-d-ala transporter subunit [Ralstonia solana... 445 e-123 >ref|YP_003775263.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63355.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 286/314 (91%), Positives = 293/314 (93%), Gaps = 4/314 (1%) Query: 1 MSLSNSPLATTSETGAPLPPPDPAAVAASGQKIRTPWREFWRKFKKQRLAVYAGVFILLL 60 MSLSN+P++ T P AVAASGQKIRTPWREFWRKFKKQ LAVYAGVFIL L Sbjct: 1 MSLSNAPISDTGAPLPPPG----PAVAASGQKIRTPWREFWRKFKKQHLAVYAGVFILFL 56 Query: 61 ILIAILAPWIVPFDAENFFDYDALNSPPTWTHWFGVDSLGRDIFSRILMGARISLASGFF 120 + +AILAPWIVPFD ENFFDYDALNSPPTW HWFGVDSLGRDIFSRI+MG RISLA+GFF Sbjct: 57 VAVAILAPWIVPFDPENFFDYDALNSPPTWVHWFGVDSLGRDIFSRIVMGTRISLAAGFF 116 Query: 121 SVAIGAVIGTVFGLLAGYYEGWWDRIVMRICDVLFAFPGILLAIGIVAILGGGMINVIIS 180 SVAIGAVIGTVFGLLAGYYEGWWDRI MRICDVLFAFPGILLAIGIVAILGGGMINVIIS Sbjct: 117 SVAIGAVIGTVFGLLAGYYEGWWDRITMRICDVLFAFPGILLAIGIVAILGGGMINVIIS 176 Query: 181 VSVFSIPAFARLVRGNTLQLKNLTYIEATRSIGASDTTIMWKHIFPGTISAIVVYFTMRI 240 VSVFSIPAFARLVRGNTLQLKNLTYIEATRSIGASD TIMWKHIFPGTISAIVVYFTMRI Sbjct: 177 VSVFSIPAFARLVRGNTLQLKNLTYIEATRSIGASDMTIMWKHIFPGTISAIVVYFTMRI 236 Query: 241 GTSIITAAGLSFLGLGAQSPTPEWGLMLNEARADMVTSPHVALVPSIAIFLTVLAFNLLG 300 GTSIITAAGLSFLGLGAQSPTPEWGLMLNEARADMVTSPHVALVPSIAIFLTVLAFNLLG Sbjct: 237 GTSIITAAGLSFLGLGAQSPTPEWGLMLNEARADMVTSPHVALVPSIAIFLTVLAFNLLG 296 Query: 301 DGLRDALDPKIDQR 314 DGLRDALDPKIDQR Sbjct: 297 DGLRDALDPKIDQR 310 >ref|YP_001898831.1| binding-protein-dependent transport systems inner membrane component [Ralstonia pickettii 12J] gb|ACD26399.1| binding-protein-dependent transport systems inner membrane component [Ralstonia pickettii 12J] Length = 299 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 235/290 (81%), Positives = 261/290 (90%) Query: 25 AVAASGQKIRTPWREFWRKFKKQRLAVYAGVFILLLILIAILAPWIVPFDAENFFDYDAL 84 A A+ + +RTPW EFWRKF+KQ LA+ AGVF++ L+LIAILAP IVPFDAEN+FDYDAL Sbjct: 10 APQAATEPVRTPWTEFWRKFRKQHLAMGAGVFVIALVLIAILAPHIVPFDAENYFDYDAL 69 Query: 85 NSPPTWTHWFGVDSLGRDIFSRILMGARISLASGFFSVAIGAVIGTVFGLLAGYYEGWWD 144 N+ P+ HWFGVDSLGRDIFSRILMG RISL +GF SV IGA+IGT+ GLLAGYYEGWWD Sbjct: 70 NAGPSAQHWFGVDSLGRDIFSRILMGTRISLEAGFVSVIIGAIIGTMLGLLAGYYEGWWD 129 Query: 145 RIVMRICDVLFAFPGILLAIGIVAILGGGMINVIISVSVFSIPAFARLVRGNTLQLKNLT 204 RIVMRI DVLFAFPGILLAIGIVAILG GMINVI +V+VFSIPAFARLVRGNTL LK+LT Sbjct: 130 RIVMRISDVLFAFPGILLAIGIVAILGNGMINVIFAVAVFSIPAFARLVRGNTLMLKHLT 189 Query: 205 YIEATRSIGASDTTIMWKHIFPGTISAIVVYFTMRIGTSIITAAGLSFLGLGAQSPTPEW 264 Y+EA RSIGASD TI+ +HI PGTIS+IVVYF+MRIGTSIITAA LSFLGLGAQ PTPEW Sbjct: 190 YVEAARSIGASDWTIIMRHILPGTISSIVVYFSMRIGTSIITAASLSFLGLGAQPPTPEW 249 Query: 265 GLMLNEARADMVTSPHVALVPSIAIFLTVLAFNLLGDGLRDALDPKIDQR 314 G MLNEARADMVT+PHVA+ PS+AIFLTVLAFNLLGDGLRDALDPKID+R Sbjct: 250 GAMLNEARADMVTAPHVAIFPSLAIFLTVLAFNLLGDGLRDALDPKIDRR 299 >ref|ZP_00945841.1| DppC [Ralstonia solanacearum UW551] ref|YP_002259661.1| transmembrane protein [Ralstonia solanacearum IPO1609] gb|EAP71685.1| DppC [Ralstonia solanacearum UW551] emb|CAQ35496.1| transmembrane protein [Ralstonia solanacearum MolK2] emb|CAQ61593.1| transmembrane protein [Ralstonia solanacearum IPO1609] Length = 299 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 230/287 (80%), Positives = 259/287 (90%) Query: 28 ASGQKIRTPWREFWRKFKKQRLAVYAGVFILLLILIAILAPWIVPFDAENFFDYDALNSP 87 A+ + +RTPW EFWRKF+KQ LA+ AGVF++ L+++AILAP IVPFD EN+FDYDALN+ Sbjct: 13 AASEPVRTPWSEFWRKFRKQHLALGAGVFVIALVVVAILAPHIVPFDPENYFDYDALNAG 72 Query: 88 PTWTHWFGVDSLGRDIFSRILMGARISLASGFFSVAIGAVIGTVFGLLAGYYEGWWDRIV 147 P+ THWFGVDSLGRDI SRILMG RISL +GF SV IGA+IGTV GLLAGYYEGWWDRIV Sbjct: 73 PSATHWFGVDSLGRDILSRILMGTRISLEAGFVSVVIGAIIGTVLGLLAGYYEGWWDRIV 132 Query: 148 MRICDVLFAFPGILLAIGIVAILGGGMINVIISVSVFSIPAFARLVRGNTLQLKNLTYIE 207 MRICDVLFAFPGILLAIGIVAILG GM NV+ +V+VFSIPAFARLVRGNTL LK+LTY+E Sbjct: 133 MRICDVLFAFPGILLAIGIVAILGSGMANVVFAVAVFSIPAFARLVRGNTLMLKHLTYVE 192 Query: 208 ATRSIGASDTTIMWKHIFPGTISAIVVYFTMRIGTSIITAAGLSFLGLGAQSPTPEWGLM 267 A RSIGASD TI+ +HI PGTIS+IVVYF+MRIGTSIITAA LSFLG+GAQ PTPEWG M Sbjct: 193 AARSIGASDRTIILRHILPGTISSIVVYFSMRIGTSIITAASLSFLGMGAQPPTPEWGAM 252 Query: 268 LNEARADMVTSPHVALVPSIAIFLTVLAFNLLGDGLRDALDPKIDQR 314 LNEARADMVT+PHVA+ PS+AIFLTVLAFNLLGDGLRDALDPKID+R Sbjct: 253 LNEARADMVTAPHVAIFPSLAIFLTVLAFNLLGDGLRDALDPKIDRR 299 >ref|YP_002981282.1| binding-protein-dependent transport systems inner membrane component [Ralstonia pickettii 12D] gb|ACS62610.1| binding-protein-dependent transport systems inner membrane component [Ralstonia pickettii 12D] Length = 299 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 234/290 (80%), Positives = 260/290 (89%) Query: 25 AVAASGQKIRTPWREFWRKFKKQRLAVYAGVFILLLILIAILAPWIVPFDAENFFDYDAL 84 A A+ + +RTPW EFWRKF+KQ LA+ AGVF++ L+LIAILAP IVPFDAEN+FDYDAL Sbjct: 10 APQAATEPVRTPWTEFWRKFRKQHLAMGAGVFVIALVLIAILAPHIVPFDAENYFDYDAL 69 Query: 85 NSPPTWTHWFGVDSLGRDIFSRILMGARISLASGFFSVAIGAVIGTVFGLLAGYYEGWWD 144 N+ P+ HWFGVDSLGRDIFSRILMG RISL +GF SV IGA++GT+ GLLAGYYEGWWD Sbjct: 70 NAGPSAQHWFGVDSLGRDIFSRILMGTRISLEAGFVSVIIGAIVGTMLGLLAGYYEGWWD 129 Query: 145 RIVMRICDVLFAFPGILLAIGIVAILGGGMINVIISVSVFSIPAFARLVRGNTLQLKNLT 204 RIVMRI DVLFAFPGILLAIGIVAILG GMINVI +V+VFSIPAFARLVRGNTL LK+LT Sbjct: 130 RIVMRISDVLFAFPGILLAIGIVAILGNGMINVIFAVAVFSIPAFARLVRGNTLMLKHLT 189 Query: 205 YIEATRSIGASDTTIMWKHIFPGTISAIVVYFTMRIGTSIITAAGLSFLGLGAQSPTPEW 264 Y+EA RSIGASD TI+ +HI PGTIS+IVVYF+MRIGTSIITAA LSFLGLGAQ PTPEW Sbjct: 190 YVEAARSIGASDWTIIMRHILPGTISSIVVYFSMRIGTSIITAASLSFLGLGAQPPTPEW 249 Query: 265 GLMLNEARADMVTSPHVALVPSIAIFLTVLAFNLLGDGLRDALDPKIDQR 314 G MLNEARADMVT PHVA+ PS+AIFLTVLAFNLLGDGLRDALDPKID+R Sbjct: 250 GAMLNEARADMVTVPHVAIFPSLAIFLTVLAFNLLGDGLRDALDPKIDRR 299 >gb|AEG69273.1| d-ala-d-ala transporter subunit [Ralstonia solanacearum Po82] Length = 299 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 233/293 (79%), Positives = 262/293 (89%), Gaps = 1/293 (0%) Query: 23 PAAVA-ASGQKIRTPWREFWRKFKKQRLAVYAGVFILLLILIAILAPWIVPFDAENFFDY 81 PA + A+ + +RTPW EFWRKF+KQ LA+ AGVF++ L+++AILAP IVPFD EN+FDY Sbjct: 7 PAVIPQAASEPVRTPWSEFWRKFRKQHLALGAGVFVIALVVVAILAPHIVPFDPENYFDY 66 Query: 82 DALNSPPTWTHWFGVDSLGRDIFSRILMGARISLASGFFSVAIGAVIGTVFGLLAGYYEG 141 DALN+ P+ THWFGVDSLGRDI SRILMG RISL +GF SV IGA+IGTV GLLAGYYEG Sbjct: 67 DALNAGPSATHWFGVDSLGRDILSRILMGTRISLEAGFVSVVIGAIIGTVLGLLAGYYEG 126 Query: 142 WWDRIVMRICDVLFAFPGILLAIGIVAILGGGMINVIISVSVFSIPAFARLVRGNTLQLK 201 WWDRIVMRICDVLFAFPGILLAIGIVAILG GM NV+ +V+VFSIPAFARLVRGNTL LK Sbjct: 127 WWDRIVMRICDVLFAFPGILLAIGIVAILGSGMANVVFAVAVFSIPAFARLVRGNTLMLK 186 Query: 202 NLTYIEATRSIGASDTTIMWKHIFPGTISAIVVYFTMRIGTSIITAAGLSFLGLGAQSPT 261 +LTY+EA RSIGASD TI+ +HI PGTIS+IVVYF+MRIGTSIITAA LSFLGLGAQ PT Sbjct: 187 HLTYVEAARSIGASDWTIILRHILPGTISSIVVYFSMRIGTSIITAASLSFLGLGAQPPT 246 Query: 262 PEWGLMLNEARADMVTSPHVALVPSIAIFLTVLAFNLLGDGLRDALDPKIDQR 314 PEWG MLNEARADMVT+PHVA+ PS+AIFLTVLAFNLLGDGLRDALDPKID+R Sbjct: 247 PEWGAMLNEARADMVTAPHVAIFPSLAIFLTVLAFNLLGDGLRDALDPKIDRR 299