BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2249.p (523 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775261.1| dipeptide ABC transporter periplasmic protei... 910 0.0 ref|YP_004751254.1| family 5 extracellular solute-binding protei... 789 0.0 ref|NP_519501.1| substate-binding periplasmic (PBP) ABC transpor... 711 0.0 emb|CCA84104.1| putative dipeptide ABC transporter,periplasmic_b... 706 0.0 emb|CCA82309.1| putative dipeptide ABC transporter,periplasmic_b... 706 0.0 >ref|YP_003775261.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63353.1| ABC-type dipeptide transport system, periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 523 Score = 910 bits (2353), Expect = 0.0, Method: Composition-based stats. Identities = 464/523 (88%), Positives = 495/523 (94%) Query: 1 MSASAKNKAMSAAKWLALGTLGAALQFGAANAFAAKTATVAVASTFTTMDPYDANDTLSL 60 MS +A +K +SAAKWLA+ LG LQF AA+AFAAKT T+AV STFTT+DPYDANDTLSL Sbjct: 1 MSTTATHKGVSAAKWLAVAALGTTLQFAAAHAFAAKTVTLAVYSTFTTLDPYDANDTLSL 60 Query: 61 SVMKSFYQGLYGFDKDMKLIPVLAEGYLVSKDGLEYTIRLKQGVKFHDGTVFKADAVKAV 120 S+ KSFYQGL+GFDKDMKLIPVLAEGYLVSKDGLEYTIRLKQGVKF DGTVFKADAVKAV Sbjct: 61 SMAKSFYQGLFGFDKDMKLIPVLAEGYLVSKDGLEYTIRLKQGVKFQDGTVFKADAVKAV 120 Query: 121 FDRVTNPDNKLKRYNLFNRIAKTEVLNDYTVKVVLKEPFSAFINVLAHPSAAMISPAALK 180 FDRVTNPDNKLKRYNLFNRIAKTE+LNDYTVKVVLKEPFSAFINVLAHPSA MISP ALK Sbjct: 121 FDRVTNPDNKLKRYNLFNRIAKTEILNDYTVKVVLKEPFSAFINVLAHPSAVMISPTALK 180 Query: 181 QYGNKDIAFHPVGTGPFKFVEWKQTDYVKVAKFDGYWKQGYPKVDEILWKPVVDNNSRSA 240 QYGNKDIAFHPVGTGPFKFVEWKQTDYVKVAKFDGYWK GYPKVDEI+WKPVVDNN+RSA Sbjct: 181 QYGNKDIAFHPVGTGPFKFVEWKQTDYVKVAKFDGYWKPGYPKVDEIIWKPVVDNNARSA 240 Query: 241 MLQTGEAQFTYPLPYEQADLLKGKGNLDVIAGPSIIQRYMSMNVKQKPFDNPKVREAINY 300 M+QTGEAQFTYPLPYEQADLLK K NLDV+A PSIIQRYMSMN KQKPFDNPKVREAINY Sbjct: 241 MMQTGEAQFTYPLPYEQADLLKSKSNLDVVAAPSIIQRYMSMNTKQKPFDNPKVREAINY 300 Query: 301 AINKDALAKVAFNGYATPMDGVLPQGVDYAFKTGPWPYDVKKAKALLAEAGYPNGFETEL 360 AINK AL KVAFNGYA PMDGV+PQGVDYA+KTGPWPYDVKKAKALLAEAGYPNGFETEL Sbjct: 301 AINKQALVKVAFNGYAVPMDGVVPQGVDYAYKTGPWPYDVKKAKALLAEAGYPNGFETEL 360 Query: 361 WSAYTHTTAMKVIQFLQQQLAQVGIKAKIQALEAGQRVERVESWQDPATAPIRLFYVGWS 420 WSAYTH+TA+K++QFLQQQLAQVGIKAKIQALEAGQRVERVESWQDPATAP+RL Y+GWS Sbjct: 361 WSAYTHSTAVKIVQFLQQQLAQVGIKAKIQALEAGQRVERVESWQDPATAPVRLLYIGWS 420 Query: 421 SSTGEADWGLRPLLASESFPPRLFNTAYYKSDKVDADIAKALTVSDRKEKEALYKDAQQE 480 SSTGEADW LRPLLASESFPPRL+NTAYYK+DKVDADIAKALT+++RK+KEALYKDAQQE Sbjct: 421 SSTGEADWALRPLLASESFPPRLYNTAYYKNDKVDADIAKALTLTERKDKEALYKDAQQE 480 Query: 481 VWKDAPWAFLVTEKLLYARAKNLKGIYIMPDQAYEFENIEFTK 523 +WKDAPWAFLVTEKLLYAR KNLKG+Y+MPDQA EFENIE K Sbjct: 481 IWKDAPWAFLVTEKLLYARNKNLKGVYVMPDQAIEFENIELVK 523 >ref|YP_004751254.1| family 5 extracellular solute-binding protein [Collimonas fungivorans Ter331] gb|AEK60431.1| extracellular solute-binding protein, family 5 [Collimonas fungivorans Ter331] Length = 515 Score = 789 bits (2038), Expect = 0.0, Method: Composition-based stats. Identities = 388/508 (76%), Positives = 442/508 (87%) Query: 14 KWLALGTLGAALQFGAANAFAAKTATVAVASTFTTMDPYDANDTLSLSVMKSFYQGLYGF 73 K LA + QF A +AFAAK T+AV STFTT+DPYD+NDTLS + +KSFYQGL+GF Sbjct: 7 KLLASIAVALTAQFAAGHAFAAKDVTLAVDSTFTTLDPYDSNDTLSQAAIKSFYQGLFGF 66 Query: 74 DKDMKLIPVLAEGYLVSKDGLEYTIRLKQGVKFHDGTVFKADAVKAVFDRVTNPDNKLKR 133 DKD+K++ VLAEGY VSKDGL YTIRL++GVKF DGT FKADAVK +RV NPDNKLKR Sbjct: 67 DKDLKVVNVLAEGYEVSKDGLVYTIRLRKGVKFQDGTDFKADAVKICLERVINPDNKLKR 126 Query: 134 YNLFNRIAKTEVLNDYTVKVVLKEPFSAFINVLAHPSAAMISPAALKQYGNKDIAFHPVG 193 +NLFNRI+K +++NDY VK+ LKEPFS FIN LAH SAAMISPAALKQYGNKDI FHPVG Sbjct: 127 FNLFNRISKVDIVNDYEVKITLKEPFSPFINTLAHSSAAMISPAALKQYGNKDIGFHPVG 186 Query: 194 TGPFKFVEWKQTDYVKVAKFDGYWKQGYPKVDEILWKPVVDNNSRSAMLQTGEAQFTYPL 253 TGPFKFVEWKQTDY+KV KFDGYWK+GYPK+D I WKPVVDNN+RSA++QTGEAQF + + Sbjct: 187 TGPFKFVEWKQTDYMKVTKFDGYWKKGYPKIDSITWKPVVDNNTRSAVMQTGEAQFAFRI 246 Query: 254 PYEQADLLKGKGNLDVIAGPSIIQRYMSMNVKQKPFDNPKVREAINYAINKDALAKVAFN 313 P+EQA+LLK K NLD+I+ PSI+QRY+SMN QKPFDNPKVR+AINYAINK+AL KVAF+ Sbjct: 247 PFEQAELLKSKPNLDLISSPSIVQRYISMNTLQKPFDNPKVRQAINYAINKEALVKVAFS 306 Query: 314 GYATPMDGVLPQGVDYAFKTGPWPYDVKKAKALLAEAGYPNGFETELWSAYTHTTAMKVI 373 GYATP DGVLPQGVDYA KTGPWPYD KKAK LLAEAGYPNGFETELWSAY HTTA K+I Sbjct: 307 GYATPQDGVLPQGVDYALKTGPWPYDPKKAKQLLAEAGYPNGFETELWSAYNHTTAQKII 366 Query: 374 QFLQQQLAQVGIKAKIQALEAGQRVERVESWQDPATAPIRLFYVGWSSSTGEADWGLRPL 433 QF+QQQLAQVGIKAK+ ALEAG RVE+VES A AP+R++Y GWSSSTGEADWGLRPL Sbjct: 367 QFVQQQLAQVGIKAKVMALEAGVRVEKVESAPVAANAPVRMYYTGWSSSTGEADWGLRPL 426 Query: 434 LASESFPPRLFNTAYYKSDKVDADIAKALTVSDRKEKEALYKDAQQEVWKDAPWAFLVTE 493 LASESFPP+LFNTAYYK++KVDADIAKALT +DR EK LYKDAQ E+WKDAPWAFLVTE Sbjct: 427 LASESFPPKLFNTAYYKNEKVDADIAKALTTTDRMEKTTLYKDAQTEIWKDAPWAFLVTE 486 Query: 494 KLLYARAKNLKGIYIMPDQAYEFENIEF 521 KLLY R+KNLKGIY+MPD ++ F+ IE Sbjct: 487 KLLYVRSKNLKGIYVMPDGSFNFDEIEL 514 >ref|NP_519501.1| substate-binding periplasmic (PBP) ABC transporter protein [Ralstonia solanacearum GMI1000] emb|CAD15082.1| probable substate-binding periplasmic (pbp) abc transporter protein [Ralstonia solanacearum GMI1000] Length = 517 Score = 711 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 354/502 (70%), Positives = 416/502 (82%), Gaps = 1/502 (0%) Query: 22 GAALQFGAANAFAAKTATVAVASTFTTMDPYDANDTLSLSVMKSFYQGLYGFDKDMKLIP 81 G AL AFAAK A +AV STFTTMDPYDANDTLS S KSFYQGL+GFDKDMKL+ Sbjct: 17 GLALAAFTMPAFAAKDAVMAVYSTFTTMDPYDANDTLSFSAAKSFYQGLFGFDKDMKLVN 76 Query: 82 VLAEGYLVSKDGLEYTIRLKQGVKFHDGTVFKADAVKAVFDRVTNPDNKLKRYNLFNRIA 141 VL E Y VSKDGL YT RL +GVKFHDGT F A+AVKA DRVTNP NKLKRY LFNR+A Sbjct: 77 VLCESYDVSKDGLVYTFRLHKGVKFHDGTTFDANAVKANLDRVTNPANKLKRYTLFNRVA 136 Query: 142 KTEVLNDYTVKVVLKEPFSAFINVLAHPSAAMISPAALKQYGNKDIAFHPVGTGPFKFVE 201 KTEV++ YT +V LKEPFS F+NVLAHPSAAMISPAAL++YG KDIAFHPVGTGPF+FVE Sbjct: 137 KTEVVDPYTARVTLKEPFSPFVNVLAHPSAAMISPAALQKYG-KDIAFHPVGTGPFEFVE 195 Query: 202 WKQTDYVKVAKFDGYWKQGYPKVDEILWKPVVDNNSRSAMLQTGEAQFTYPLPYEQADLL 261 WKQTDY+K KF GYWK G PK+D I WKPVVDNN+R+ ++QTGEA F + +P+EQA +L Sbjct: 196 WKQTDYLKGKKFAGYWKTGLPKIDTITWKPVVDNNTRATVMQTGEADFAFSIPFEQAAVL 255 Query: 262 KGKGNLDVIAGPSIIQRYMSMNVKQKPFDNPKVREAINYAINKDALAKVAFNGYATPMDG 321 KG +D+IA PSIIQRY++ N + KPFDNPKVR+AINYAINKDAL KVAF+ YA P DG Sbjct: 256 KGSPKVDLIAAPSIIQRYITFNTRVKPFDNPKVRQAINYAINKDALTKVAFSSYAVPADG 315 Query: 322 VLPQGVDYAFKTGPWPYDVKKAKALLAEAGYPNGFETELWSAYTHTTAMKVIQFLQQQLA 381 V+PQGVDYA K GPWPY+ KA+ALL EAGYP+GFET+LWSAY HTTA K+IQF+QQQLA Sbjct: 316 VVPQGVDYAVKLGPWPYNPAKARALLKEAGYPDGFETQLWSAYNHTTAQKIIQFVQQQLA 375 Query: 382 QVGIKAKIQALEAGQRVERVESWQDPATAPIRLFYVGWSSSTGEADWGLRPLLASESFPP 441 QVGIKA++QALEAGQRVERVES Q P A +R++Y+GWSSSTGE+DW +RPLLASE+ PP Sbjct: 376 QVGIKAQVQALEAGQRVERVESVQKPEDAGVRMYYMGWSSSTGESDWAIRPLLASEAMPP 435 Query: 442 RLFNTAYYKSDKVDADIAKALTVSDRKEKEALYKDAQQEVWKDAPWAFLVTEKLLYARAK 501 + NTAYYK+D+VDADIA AL +DR EK LY DAQ+ +W+DAPWAFLVTEK++YARAK Sbjct: 436 KQLNTAYYKNDQVDADIAGALRTTDRAEKTKLYTDAQKRIWEDAPWAFLVTEKVVYARAK 495 Query: 502 NLKGIYIMPDQAYEFENIEFTK 523 L G Y+ PD ++ F++I+ + Sbjct: 496 RLSGAYVAPDGSFSFDDIDIKQ 517 >emb|CCA84104.1| putative dipeptide ABC transporter,periplasmic_binding component [Ralstonia syzygii R24] Length = 517 Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats. Identities = 351/489 (71%), Positives = 412/489 (84%), Gaps = 1/489 (0%) Query: 32 AFAAKTATVAVASTFTTMDPYDANDTLSLSVMKSFYQGLYGFDKDMKLIPVLAEGYLVSK 91 AFAAK A +AV STFTT+DPYDANDTLS S KSFYQGL+GFDKDMKL+ VLAE Y VSK Sbjct: 27 AFAAKDAVMAVYSTFTTLDPYDANDTLSFSATKSFYQGLFGFDKDMKLVNVLAESYDVSK 86 Query: 92 DGLEYTIRLKQGVKFHDGTVFKADAVKAVFDRVTNPDNKLKRYNLFNRIAKTEVLNDYTV 151 DGL YT +L+ GVKFHDGT F A+AVKA DRVTNP NKLKRY LFNR+AKTEV++ T Sbjct: 87 DGLVYTFKLRHGVKFHDGTPFDANAVKANLDRVTNPANKLKRYTLFNRVAKTEVVDPTTA 146 Query: 152 KVVLKEPFSAFINVLAHPSAAMISPAALKQYGNKDIAFHPVGTGPFKFVEWKQTDYVKVA 211 +V LKEPFS FINVLAHPSAAMISPAAL++YG KDIAFHPVGTGPF+FVEWKQTDY+K Sbjct: 147 RVTLKEPFSPFINVLAHPSAAMISPAALQKYG-KDIAFHPVGTGPFEFVEWKQTDYLKGK 205 Query: 212 KFDGYWKQGYPKVDEILWKPVVDNNSRSAMLQTGEAQFTYPLPYEQADLLKGKGNLDVIA 271 KF GYWK G PK+D I WKPVVDNN+R+ ++QTGEA F + +P+EQA +LKG +D+IA Sbjct: 206 KFAGYWKAGLPKIDTITWKPVVDNNTRATVMQTGEADFAFSIPFEQAAVLKGNPKVDLIA 265 Query: 272 GPSIIQRYMSMNVKQKPFDNPKVREAINYAINKDALAKVAFNGYATPMDGVLPQGVDYAF 331 PSIIQRY++ N KPFDNPKVR+AINYAINKDAL KVAF+GYA P DGV+PQGVDYA Sbjct: 266 APSIIQRYITFNTHVKPFDNPKVRQAINYAINKDALTKVAFSGYAVPADGVVPQGVDYAV 325 Query: 332 KTGPWPYDVKKAKALLAEAGYPNGFETELWSAYTHTTAMKVIQFLQQQLAQVGIKAKIQA 391 K GPWPY+ KA+ALL EAGYP+GFET+LWSAY HTTA K+IQF+QQQLAQVGIKA++QA Sbjct: 326 KLGPWPYNPAKARALLKEAGYPDGFETQLWSAYNHTTAQKIIQFVQQQLAQVGIKAQVQA 385 Query: 392 LEAGQRVERVESWQDPATAPIRLFYVGWSSSTGEADWGLRPLLASESFPPRLFNTAYYKS 451 LEAGQRVERVES Q P A +R++Y+GWSSSTGE+DW LRPLLASE+FPP+ N AYYK+ Sbjct: 386 LEAGQRVERVESVQKPEDAGVRMYYMGWSSSTGESDWALRPLLASEAFPPKQLNVAYYKN 445 Query: 452 DKVDADIAKALTVSDRKEKEALYKDAQQEVWKDAPWAFLVTEKLLYARAKNLKGIYIMPD 511 ++VDADIA AL +DR EK LY DAQ+ +W+DAPWAFLVTEK++YARAK L G Y+ PD Sbjct: 446 EQVDADIAGALRTTDRAEKTKLYTDAQKRIWEDAPWAFLVTEKVVYARAKRLSGAYVAPD 505 Query: 512 QAYEFENIE 520 ++ F++I+ Sbjct: 506 GSFSFDDID 514 >emb|CCA82309.1| putative dipeptide ABC transporter,periplasmic_binding component [blood disease bacterium R229] Length = 517 Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats. Identities = 351/489 (71%), Positives = 412/489 (84%), Gaps = 1/489 (0%) Query: 32 AFAAKTATVAVASTFTTMDPYDANDTLSLSVMKSFYQGLYGFDKDMKLIPVLAEGYLVSK 91 AFAAK A +AV STFTT+DPYDANDTLS S KSFYQGL+GFDKDMKL+ VLAE Y VSK Sbjct: 27 AFAAKDAVMAVYSTFTTLDPYDANDTLSFSATKSFYQGLFGFDKDMKLVNVLAESYDVSK 86 Query: 92 DGLEYTIRLKQGVKFHDGTVFKADAVKAVFDRVTNPDNKLKRYNLFNRIAKTEVLNDYTV 151 DGL YT +L+ GVKFHDGT F A+AVKA DRVTNP NKLKRY LFNR+AKTEV++ T Sbjct: 87 DGLVYTFKLRHGVKFHDGTPFDANAVKANLDRVTNPANKLKRYTLFNRVAKTEVVDPTTA 146 Query: 152 KVVLKEPFSAFINVLAHPSAAMISPAALKQYGNKDIAFHPVGTGPFKFVEWKQTDYVKVA 211 +V LKEPFS FINVLAHPSAAMISPAAL++YG KDIAFHPVGTGPF+FVEWKQTDY+K Sbjct: 147 RVTLKEPFSPFINVLAHPSAAMISPAALQKYG-KDIAFHPVGTGPFEFVEWKQTDYLKGK 205 Query: 212 KFDGYWKQGYPKVDEILWKPVVDNNSRSAMLQTGEAQFTYPLPYEQADLLKGKGNLDVIA 271 KF GYWK G PK+D I WKPVVDNN+R+ ++QTGEA F + +P+EQA +LKG +D+IA Sbjct: 206 KFAGYWKAGLPKIDTITWKPVVDNNTRATVMQTGEADFAFSIPFEQAAVLKGNPKVDLIA 265 Query: 272 GPSIIQRYMSMNVKQKPFDNPKVREAINYAINKDALAKVAFNGYATPMDGVLPQGVDYAF 331 PSIIQRY++ N KPFDNPKVR+AINYAINKDAL KVAF+GYA P DGV+PQGVDYA Sbjct: 266 APSIIQRYITFNTHVKPFDNPKVRQAINYAINKDALTKVAFSGYAVPADGVVPQGVDYAV 325 Query: 332 KTGPWPYDVKKAKALLAEAGYPNGFETELWSAYTHTTAMKVIQFLQQQLAQVGIKAKIQA 391 K GPWPY+ KA+ALL EAGYP+GFET+LWSAY HTTA K+IQF+QQQLAQVGIKA++QA Sbjct: 326 KLGPWPYNPAKARALLKEAGYPDGFETQLWSAYNHTTAQKIIQFVQQQLAQVGIKAQVQA 385 Query: 392 LEAGQRVERVESWQDPATAPIRLFYVGWSSSTGEADWGLRPLLASESFPPRLFNTAYYKS 451 LEAGQRVERVES Q P A +R++Y+GWSSSTGE+DW LRPLLASE+FPP+ N AYYK+ Sbjct: 386 LEAGQRVERVESVQKPEDAGVRMYYMGWSSSTGESDWALRPLLASEAFPPKQLNVAYYKN 445 Query: 452 DKVDADIAKALTVSDRKEKEALYKDAQQEVWKDAPWAFLVTEKLLYARAKNLKGIYIMPD 511 ++VDADIA AL +DR EK LY DAQ+ +W+DAPWAFLVTEK++YARAK L G Y+ PD Sbjct: 446 EQVDADIAGALRTTDRAEKTKLYTDAQKRIWEDAPWAFLVTEKVVYARAKRLSGAYVAPD 505 Query: 512 QAYEFENIE 520 ++ F++I+ Sbjct: 506 GSFSFDDID 514