BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2246.p (278 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775258.1| transcription regulator protein [Herbaspiril... 389 e-106 ref|YP_004751257.1| GlvR family transcriptional regulator [Colli... 311 5e-83 emb|CCA84107.1| putative transcriptional regulator; RpiR family ... 268 7e-70 ref|NP_519498.1| hypothetical protein RSc1377 [Ralstonia solanac... 265 5e-69 emb|CBJ38630.1| putative transcriptional regulator; RpiR family ... 265 8e-69 >ref|YP_003775258.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63350.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 233/280 (83%), Positives = 250/280 (89%), Gaps = 2/280 (0%) Query: 1 MTIDELSEAAGISVATANRFAHALGFDGYASFRAALVSDFATTLAPVEKLREQVQRTATS 60 MTIDELSEAAGISVATANRFAHALGFDGYASFRAALVSDFATTLAPVEKLR +VQR ATS Sbjct: 48 MTIDELSEAAGISVATANRFAHALGFDGYASFRAALVSDFATTLAPVEKLRNEVQRAATS 107 Query: 61 AEIMAAAFDSDIANIEATRRMLTPEHCEQAVDMILSAQRIFITGFGASAYLSGLMAHTLE 120 AEIMAAAFDSDIANIEATRRMLT CE AVDMIL+A+RIFITGFGASAYL+GLMAH LE Sbjct: 108 AEIMAAAFDSDIANIEATRRMLTASDCEAAVDMILAAERIFITGFGASAYLAGLMAHALE 167 Query: 121 PYVRTVSSVAMAGGPSQAARQFFKLDSDDLVIAMVFPRYAADTVWLTQRAVEKGARVIAL 180 PYVRTVSSVA+AGGPSQA RQFFKLD+ DLVI MVFPRYAADTVWLTQRAVEKGAR++A+ Sbjct: 168 PYVRTVSSVALAGGPSQAGRQFFKLDNRDLVIPMVFPRYAADTVWLTQRAVEKGARILAI 227 Query: 181 TDTPGSPLVPLADVALYAQTDGRLAPTSDAAALILIQALCDAVAHRARRSVQAATQMAEF 240 TD+PGSPLVPLADV +YAQTD +L+PTSDAAALILIQALCDAVAHRARRSVQAA+QMAEF Sbjct: 228 TDSPGSPLVPLADVTIYAQTDRKLSPTSDAAALILIQALCDAVAHRARRSVQAASQMAEF 287 Query: 241 VLPWLYLAQQQQRAGTTPVGKPVRAA--AKRAPTKGKTNA 278 VLPWLYL QQQQR + + A AK T+ KT A Sbjct: 288 VLPWLYLPQQQQRPVVSKAAGRAKTAKTAKDVSTRRKTKA 327 >ref|YP_004751257.1| GlvR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60434.1| transcriptional regulator, GlvR-family [Collimonas fungivorans Ter331] Length = 328 Score = 311 bits (798), Expect = 5e-83, Method: Composition-based stats. Identities = 185/276 (67%), Positives = 223/276 (80%), Gaps = 2/276 (0%) Query: 1 MTIDELSEAAGISVATANRFAHALGFDGYASFRAALVSDFATTLAPVEKLREQVQRTATS 60 MTIDEL++A G+S+ATANRFAHALGFDGY +FRAALV DFA++LAPVEKLR+QV R A+S Sbjct: 52 MTIDELADAVGVSLATANRFAHALGFDGYPAFRAALVLDFASSLAPVEKLRDQVLRPASS 111 Query: 61 AEIMAAAFDSDIANIEATRRMLTPEHCEQAVDMILSAQRIFITGFGASAYLSGLMAHTLE 120 AEIMAAA +D+ N+EAT+R L+P HC+QAV MIL+A+RIFI GFGASA+L+G+MAH LE Sbjct: 112 AEIMAAALRADMQNLEATQRALSPAHCDQAVSMILNAERIFILGFGASAFLAGIMAHALE 171 Query: 121 PYVRTVSSVAMAGGPSQAARQFFKLDSDDLVIAMVFPRYAADTVWLTQRAVEKGARVIAL 180 PY RTV SVA GGPSQAARQFFKLD DLVIA+ FPRY DTV L RA E+ A+V+A Sbjct: 172 PYCRTVLSVASPGGPSQAARQFFKLDQRDLVIALAFPRYVTDTVTLAGRAKERAAQVLAF 231 Query: 181 TDTPGSPLVPLADVALYAQTDGRLAPTSDAAALILIQALCDAVAHRARRSVQAATQMAEF 240 TD P SPLVPLADV LYAQT+ L+PTSDAAAL LIQA+CDAVAHRA RSV AA++M E Sbjct: 232 TDAPTSPLVPLADVTLYAQTERLLSPTSDAAALALIQAVCDAVAHRANRSVHAASKMTEA 291 Query: 241 VLPWLYLAQQQQRAGT--TPVGKPVRAAAKRAPTKG 274 VLPWL+ +++ GT K +AA++++ TK Sbjct: 292 VLPWLHHPDGRRQPGTPNKSGNKANKAASRKSATKA 327 >emb|CCA84107.1| putative transcriptional regulator; RpiR family [Ralstonia syzygii R24] Length = 332 Score = 268 bits (685), Expect = 7e-70, Method: Composition-based stats. Identities = 151/249 (60%), Positives = 187/249 (75%) Query: 1 MTIDELSEAAGISVATANRFAHALGFDGYASFRAALVSDFATTLAPVEKLREQVQRTATS 60 M IDE +EA G+SVATANRFAHALGFDGY FRA LV F TLAPVEKLR ++ R A+S Sbjct: 54 MRIDEFAEAVGMSVATANRFAHALGFDGYPRFRAELVRGFEATLAPVEKLRHELARPASS 113 Query: 61 AEIMAAAFDSDIANIEATRRMLTPEHCEQAVDMILSAQRIFITGFGASAYLSGLMAHTLE 120 AEI AA+ + DI N+EATRRML P CE+AVD IL+A RI++ GFGAS YL+GL+ H L+ Sbjct: 114 AEIFAASLNEDIGNLEATRRMLDPAACERAVDAILAAPRIYVVGFGASGYLAGLLRHGLD 173 Query: 121 PYVRTVSSVAMAGGPSQAARQFFKLDSDDLVIAMVFPRYAADTVWLTQRAVEKGARVIAL 180 Y TV SV+ GG S AARQ K+ DDL+IA+ FPRYAADT+ L +R + G RV+AL Sbjct: 174 LYCDTVLSVSQPGGASDAARQLRKIAPDDLLIAIAFPRYAADTITLAKRVRDHGGRVLAL 233 Query: 181 TDTPGSPLVPLADVALYAQTDGRLAPTSDAAALILIQALCDAVAHRARRSVQAATQMAEF 240 TD P SPL PLAD+ALYA+T+ + A TSD A + LI+ALC AVAHR++ S+++A + F Sbjct: 234 TDGPASPLAPLADIALYARTERQFAATSDTATVALIEALCGAVAHRSKHSLESAANLTAF 293 Query: 241 VLPWLYLAQ 249 VLPWL+ Q Sbjct: 294 VLPWLHAGQ 302 >ref|NP_519498.1| hypothetical protein RSc1377 [Ralstonia solanacearum GMI1000] emb|CAD15079.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 332 Score = 265 bits (677), Expect = 5e-69, Method: Composition-based stats. Identities = 150/249 (60%), Positives = 189/249 (75%) Query: 1 MTIDELSEAAGISVATANRFAHALGFDGYASFRAALVSDFATTLAPVEKLREQVQRTATS 60 M IDE +EA G+SVATANRFAHALGFDGY FRA LV F TLAPVEKLR ++ R A+S Sbjct: 54 MRIDEFAEAVGMSVATANRFAHALGFDGYPRFRAELVRGFEATLAPVEKLRHELARPASS 113 Query: 61 AEIMAAAFDSDIANIEATRRMLTPEHCEQAVDMILSAQRIFITGFGASAYLSGLMAHTLE 120 AEI AA+ + DI N+EATRRML P CE+AV+ IL+A RI++ GFGAS YL+GL+ H L+ Sbjct: 114 AEIFAASLNEDIGNLEATRRMLDPAACERAVEAILAAPRIYVVGFGASGYLAGLLRHGLD 173 Query: 121 PYVRTVSSVAMAGGPSQAARQFFKLDSDDLVIAMVFPRYAADTVWLTQRAVEKGARVIAL 180 Y TV SV+ AGG S AARQ K+ DDL+IA+ FPRYAADT+ L +R + G RV+AL Sbjct: 174 LYCDTVLSVSQAGGASDAARQLRKIAPDDLLIAIAFPRYAADTITLAKRVRDHGGRVLAL 233 Query: 181 TDTPGSPLVPLADVALYAQTDGRLAPTSDAAALILIQALCDAVAHRARRSVQAATQMAEF 240 TD P SPL PLAD+ALYA+T+ + + +SD+A + LI+ALC AVAHR+ RS+++A + F Sbjct: 234 TDGPASPLAPLADIALYARTERQFSASSDSATVALIEALCGAVAHRSARSLESAANLTAF 293 Query: 241 VLPWLYLAQ 249 VLPWL+ Q Sbjct: 294 VLPWLHAGQ 302 >emb|CBJ38630.1| putative transcriptional regulator; RpiR family [Ralstonia solanacearum CMR15] Length = 335 Score = 265 bits (676), Expect = 8e-69, Method: Composition-based stats. Identities = 150/249 (60%), Positives = 188/249 (75%) Query: 1 MTIDELSEAAGISVATANRFAHALGFDGYASFRAALVSDFATTLAPVEKLREQVQRTATS 60 M IDE +EA G+SVATANRFAHALGFDGY FRA LV F TLAPVEKLR ++ R A+S Sbjct: 54 MRIDEFAEAVGMSVATANRFAHALGFDGYPRFRAELVRGFEATLAPVEKLRHELARPASS 113 Query: 61 AEIMAAAFDSDIANIEATRRMLTPEHCEQAVDMILSAQRIFITGFGASAYLSGLMAHTLE 120 AEI AA+ + DI N+EATRRML P CE+AV+ IL A RI++ GFGAS YL+GL+ H L+ Sbjct: 114 AEIFAASLNEDIGNLEATRRMLDPAACERAVEAILGAPRIYVVGFGASGYLAGLLRHGLD 173 Query: 121 PYVRTVSSVAMAGGPSQAARQFFKLDSDDLVIAMVFPRYAADTVWLTQRAVEKGARVIAL 180 Y TV SV+ AGG S AARQ K+ DDL+IA+ FPRYAADT+ L +R + G RV+AL Sbjct: 174 LYCDTVLSVSQAGGASDAARQLRKIAPDDLLIAIAFPRYAADTITLAKRVRDHGGRVLAL 233 Query: 181 TDTPGSPLVPLADVALYAQTDGRLAPTSDAAALILIQALCDAVAHRARRSVQAATQMAEF 240 TD P SPL PLAD+ALYA+T+ + + +SD+A + LI+ALC AVAHR+ RS+++A + F Sbjct: 234 TDGPASPLAPLADIALYARTERQFSASSDSATVALIEALCGAVAHRSARSLESAANLTAF 293 Query: 241 VLPWLYLAQ 249 VLPWL+ Q Sbjct: 294 VLPWLHAGQ 302