BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2245.p (311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775257.1| transcription regulator protein [Herbaspiril... 574 e-162 ref|YP_004753469.1| LysR family transcriptional regulator [Colli... 489 e-136 ref|ZP_03541207.1| transcriptional regulator, LysR family [Comam... 421 e-115 ref|YP_003280194.1| LysR family transcriptional regulator [Comam... 421 e-115 ref|YP_001562472.1| LysR family transcriptional regulator [Delft... 412 e-113 >ref|YP_003775257.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63349.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 574 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 295/310 (95%), Positives = 301/310 (97%) Query: 1 MNIRFLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALTAD 60 MNIRFLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALTAD Sbjct: 1 MNIRFLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALTAD 60 Query: 61 GSKALVYAERMVKLMREMKDDMSDREVFAGVIRIGVIESIVHSWFPDFLGRLHKAFPRLQ 120 GSKALV+AERMVKLMREMK+DMSDREV+AGVIRIGVIESIVHSWFPDFLGRLHK FPRLQ Sbjct: 61 GSKALVHAERMVKLMREMKEDMSDREVYAGVIRIGVIESIVHSWFPDFLGRLHKTFPRLQ 120 Query: 121 IEIVSDTTIHLHEQFSKSNLDLVLQAEPVIGPQVSNIALCEFPMRWVGSPKLDIGSETLS 180 IEIVSDTTIHLHEQFSK NLDLVLQAE VIGPQVSN+ALCEFPMRWVGSPKLDIGSETLS Sbjct: 121 IEIVSDTTIHLHEQFSKGNLDLVLQAEAVIGPQVSNLALCEFPMRWVGSPKLDIGSETLS 180 Query: 181 LADLAAFPIISFARNSGPHAVIERLFSGSERGERTLHINCIASVATMIRLATDGFGITAV 240 LADLAAFPIISFARNSGPHAVIERLFS S+R ERTLHINCIASVATMIRLATDGFGITAV Sbjct: 181 LADLAAFPIISFARNSGPHAVIERLFSDSQRSERTLHINCIASVATMIRLATDGFGITAV 240 Query: 241 PPAIIQRELNEESLHLLRVDTEFPALALIACFRSDHENPLTETVARIAQETASDFALNWG 300 PPAIIQRELNEESLHLLRVDTEFPAL LIA FRSDHENPLTETVARIAQETA+DFALNWG Sbjct: 241 PPAIIQRELNEESLHLLRVDTEFPALVLIASFRSDHENPLTETVARIAQETAADFALNWG 300 Query: 301 QEIARLPAPL 310 EIARLPA L Sbjct: 301 HEIARLPASL 310 >ref|YP_004753469.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK62646.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 321 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 243/308 (78%), Positives = 276/308 (89%), Gaps = 2/308 (0%) Query: 1 MNIRFLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALTAD 60 MNIRFLETFVWLA+L+NFRLTAE+LHTTQAAVSSRIA+LEQDFGVRLFDR AREVALT D Sbjct: 6 MNIRFLETFVWLAKLKNFRLTAEKLHTTQAAVSSRIATLEQDFGVRLFDRGAREVALTTD 65 Query: 61 GSKALVYAERMVKLMREMKDDMSDREVFAGVIRIGVIESIVHSWFPDFLGRLHKAFPRLQ 120 GSKALVYAER+VKLMREMK+DMS R+ ++GV+RIGVIESIVHSWFPD +GR+HK FP+L+ Sbjct: 66 GSKALVYAERIVKLMREMKEDMSARDNYSGVLRIGVIESIVHSWFPDLIGRIHKLFPQLE 125 Query: 121 IEIVSDTTIHLHEQFSKSNLDLVLQAEPVIGPQVSNIALCEFPMRWVGSPKLDIGSETLS 180 IEI SDTTIHL EQFSK +LDLVLQAEPVI P + N+ LCE PMRWVGS KL+IGSETLS Sbjct: 126 IEIASDTTIHLREQFSKGDLDLVLQAEPVIAPNIRNLKLCELPMRWVGSSKLEIGSETLS 185 Query: 181 LADLAAFPIISFARNSGPHAVIERLFSGSERGERTLHINCIASVATMIRLATDGFGITAV 240 L+DLAAFP++SFARNSGPH +IE+LFS SERG +LHINCI SVATMIRL +DGFG+ V Sbjct: 186 LSDLAAFPLVSFARNSGPHTIIEQLFSNSERG--SLHINCITSVATMIRLVSDGFGVAVV 243 Query: 241 PPAIIQRELNEESLHLLRVDTEFPALALIACFRSDHENPLTETVARIAQETASDFALNWG 300 PPAIIQRELN+ SL LLRVD +FPAL L+A FR+D EN LTET+A IAQ+TAS+FALNWG Sbjct: 244 PPAIIQRELNDGSLQLLRVDADFPALLLMASFRNDPENALTETIASIAQQTASEFALNWG 303 Query: 301 QEIARLPA 308 EIARLPA Sbjct: 304 PEIARLPA 311 >ref|ZP_03541207.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gb|EED65493.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 313 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 213/308 (69%), Positives = 253/308 (82%), Gaps = 2/308 (0%) Query: 1 MNIRFLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALTAD 60 MN+RFLETFV LA LRNFR+TAERL TTQAAVSSRIA+LEQ+FGVRLFDR REV LTAD Sbjct: 1 MNLRFLETFVLLAELRNFRMTAERLFTTQAAVSSRIATLEQEFGVRLFDRGVREVTLTAD 60 Query: 61 GSKALVYAERMVKLMREMKDDMSDREVFAGVIRIGVIESIVHSWFPDFLGRLHKAFPRLQ 120 G+KALV+AERM++LMREM++DM D++ +AGVIRIG IESIVHSWFPDFL L + +PRLQ Sbjct: 61 GAKALVHAERMLRLMREMREDMLDKQAYAGVIRIGAIESIVHSWFPDFLALLQQRYPRLQ 120 Query: 121 IEIVSDTTIHLHEQFSKSNLDLVLQAEPVIGPQVSNIALCEFPMRWVGSPKLDIGSETLS 180 +EI DTTIH+ EQ K LD+ LQA+PV G ++N++L EF M WVGSPKL IG ETLS Sbjct: 121 VEIACDTTIHMSEQLLKGQLDVSLQAKPVSGGAIANLSLGEFAMAWVGSPKLGIGDETLS 180 Query: 181 LADLAAFPIISFARNSGPHAVIERLFSGSERGERTLHINCIASVATMIRLATDGFGITAV 240 LA+LAAFPI+SFAR S P+AVIE+LFS G + H+NCIASVATMIR+ DG G+ AV Sbjct: 181 LAELAAFPIMSFARGSEPYAVIEQLFSA--EGNASPHMNCIASVATMIRVVCDGLGVAAV 238 Query: 241 PPAIIQRELNEESLHLLRVDTEFPALALIACFRSDHENPLTETVARIAQETASDFALNWG 300 PPAIIQREL E+ L LLRVD EFP+L L+AC+R+DH+NPL ETV R A+E A+ FALN G Sbjct: 239 PPAIIQRELAEQRLRLLRVDREFPSLPLVACWRNDHQNPLAETVVRAAEEVATAFALNHG 298 Query: 301 QEIARLPA 308 Q +ARLP Sbjct: 299 QAVARLPG 306 >ref|YP_003280194.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] ref|ZP_07046135.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] gb|ACY34898.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] gb|EFI60351.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] Length = 313 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 213/308 (69%), Positives = 253/308 (82%), Gaps = 2/308 (0%) Query: 1 MNIRFLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALTAD 60 MN+RFLETFV LA LRNFR+TAERL TTQAAVSSRIA+LEQ+FGVRLFDR REV LTAD Sbjct: 1 MNLRFLETFVLLAELRNFRMTAERLFTTQAAVSSRIATLEQEFGVRLFDRGVREVTLTAD 60 Query: 61 GSKALVYAERMVKLMREMKDDMSDREVFAGVIRIGVIESIVHSWFPDFLGRLHKAFPRLQ 120 G+KALV+AERM++LMREM++DM D++ +AGVIRIG IESIVHSWFPDFL L + +PRLQ Sbjct: 61 GAKALVHAERMLRLMREMREDMLDKQAYAGVIRIGAIESIVHSWFPDFLALLQQRYPRLQ 120 Query: 121 IEIVSDTTIHLHEQFSKSNLDLVLQAEPVIGPQVSNIALCEFPMRWVGSPKLDIGSETLS 180 +EI DTTIH+ EQ K LD+ LQA+PV G ++N++L EF M WVGSPKL IG ETLS Sbjct: 121 VEIACDTTIHMSEQLLKGQLDVSLQAKPVSGGAIANLSLGEFAMAWVGSPKLGIGDETLS 180 Query: 181 LADLAAFPIISFARNSGPHAVIERLFSGSERGERTLHINCIASVATMIRLATDGFGITAV 240 LA+LAAFPI+SFAR S P+AVIE+LFS G + H+NCIASVATMIR+ DG G+ AV Sbjct: 181 LAELAAFPIMSFARGSEPYAVIEQLFSA--EGSASPHMNCIASVATMIRVVCDGLGVAAV 238 Query: 241 PPAIIQRELNEESLHLLRVDTEFPALALIACFRSDHENPLTETVARIAQETASDFALNWG 300 PPAIIQREL E+ L LLRVD EFP+L L+AC+R+DH+NPL ETV R A+E A+ FALN G Sbjct: 239 PPAIIQRELAEQRLRLLRVDREFPSLPLVACWRNDHQNPLAETVVRAAEEVATAFALNHG 298 Query: 301 QEIARLPA 308 Q +ARLP Sbjct: 299 QAVARLPG 306 >ref|YP_001562472.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX34087.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 311 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 215/308 (69%), Positives = 254/308 (82%), Gaps = 2/308 (0%) Query: 1 MNIRFLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALTAD 60 MN+RFLETFV LA LRNFRLTAERL+TTQAAVSSRIA+LEQ+FGVRLFDR REV LTAD Sbjct: 1 MNLRFLETFVLLAELRNFRLTAERLYTTQAAVSSRIATLEQEFGVRLFDRGVREVTLTAD 60 Query: 61 GSKALVYAERMVKLMREMKDDMSDREVFAGVIRIGVIESIVHSWFPDFLGRLHKAFPRLQ 120 G+KALV+AERM++LMREM++DM D++ +AGVIRIG IESIVHSWFPDFL L + +PRLQ Sbjct: 61 GAKALVHAERMLRLMREMREDMLDKQAYAGVIRIGAIESIVHSWFPDFLALLQQRYPRLQ 120 Query: 121 IEIVSDTTIHLHEQFSKSNLDLVLQAEPVIGPQVSNIALCEFPMRWVGSPKLDIGSETLS 180 +EI DTT+H+ EQ K LDL LQA+PV V +++L EFPM WVGSPKL IG ETLS Sbjct: 121 VEIACDTTLHMSEQLVKGQLDLSLQAKPVTAAGVGHLSLGEFPMAWVGSPKLGIGDETLS 180 Query: 181 LADLAAFPIISFARNSGPHAVIERLFSGSERGERTLHINCIASVATMIRLATDGFGITAV 240 LA+LAAFPI+ FAR S P+AVIE+LFS ++H+NCIASVATMIR+ DG G+ AV Sbjct: 181 LAELAAFPIMCFARGSEPYAVIEQLFSTESSA--SVHLNCIASVATMIRVVCDGLGVAAV 238 Query: 241 PPAIIQRELNEESLHLLRVDTEFPALALIACFRSDHENPLTETVARIAQETASDFALNWG 300 PPAIIQREL E+ L LLRVD EFP+L L+ACFR+DH+NPLTE VAR A+ETA+ FALN G Sbjct: 239 PPAIIQRELAEQRLRLLRVDREFPSLPLVACFRNDHQNPLTEVVARAAEETAAAFALNHG 298 Query: 301 QEIARLPA 308 Q +ARLP Sbjct: 299 QAVARLPG 306