BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2234.p         (210 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002983243.1| hypothetical protein Rpic12D_3307 [Ralstonia...    66   4e-09

>ref|YP_002983243.1| hypothetical protein Rpic12D_3307 [Ralstonia pickettii 12D]
 gb|ACS64571.1| hypothetical protein Rpic12D_3307 [Ralstonia pickettii 12D]
          Length = 235

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 20/172 (11%)

Query: 35  TAFITN--CGESCP----DDPLLWALGCSITFPVIGHLLLKKTRHTVANTMLVAVALAAT 88
           TAF  N  CG  C     +  LL  L   + FP++G    +K   T          L   
Sbjct: 26  TAFDNNPGCGLDCASPELEAALLSGLATVLAFPILGFFFTRKRNSTTRRIAATLSTLMLV 85

Query: 89  VLLPALTMYACSLHEKYWRLHG-KQVYPDIEYSLMVISE------------EPLPTLGIA 135
            +L A   Y  +LH +Y R    + V PD+++  M I+             +P     IA
Sbjct: 86  AILLAFVHYVFNLHTRYLRAEAARPVQPDLDFMYMAIATRDVQTYTELKKGQPQSVGMIA 145

Query: 136 EAERCVINNDLRCGENPQVIPALCQSGFVSLPRKHWSSFKRLPNEDLQGPAP 187
           + +RC I     CG+ P+    LC+SG V +    W  F  +P E++ G  P
Sbjct: 146 QWQRCAIGG-ASCGKQPRQAHMLCKSGEVFVNETDWKYFSLIPKENVFGAIP 196