BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2232.p (378 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775250.1| multidrug ABC transporter permease [Herbaspi... 571 e-161 ref|ZP_04764548.1| ABC-2 type transporter [Acidovorax delafieldi... 502 e-140 ref|YP_001100833.1| putative ABC transport system membrane prote... 501 e-140 ref|YP_003158681.1| ABC-2 type transporter [Desulfomicrobium bac... 500 e-139 ref|YP_002552957.1| ABC transporter [Acidovorax ebreus TPSY] >gi... 490 e-136 >ref|YP_003775250.1| multidrug ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63342.1| ABC-type multidrug transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 375 Score = 571 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 337/372 (90%), Positives = 352/372 (94%) Query: 7 SLSNIFRLGVKELWSLLRDPAMLVLIAYTFTLSIYVAATAMPESLHNAAIAVVDNDGSPL 66 S +NI+RLG+KELWSLLRDPAMLVLIAYTF+LSIYVAATAMPESLH+AAIA+VDND SPL Sbjct: 4 SWANIYRLGIKELWSLLRDPAMLVLIAYTFSLSIYVAATAMPESLHHAAIAIVDNDSSPL 63 Query: 67 SARIASLFYPPHFKVARLVTAREADAGLDAGDFTFVLDIPADFQRDVLAGRAPAVQLNVD 126 SARIA+ FYPPHFKVARLVTAR+ADAGLD GD+TFVLDIPADFQRDVLA RAPAVQLNVD Sbjct: 64 SARIAASFYPPHFKVARLVTARQADAGLDDGDYTFVLDIPADFQRDVLAARAPAVQLNVD 123 Query: 127 ATRMSQAFTGNSYIQQMVSNEVTQFVRRSEAAGDAPVGLALRMRFNPNLEQSWFGSLMEI 186 ATRMSQAFTGNSYIQQMV+NEV QFV+R E APV LALRMRFNPNLEQSWFGSLMEI Sbjct: 124 ATRMSQAFTGNSYIQQMVTNEVAQFVQRQEGGASAPVNLALRMRFNPNLEQSWFGSLMEI 183 Query: 187 INNVTMLSIILTGAALIREREHGTIEHLLVMPVSPAEIMLAKVWAMGSVVALAALMSLLL 246 INNVTMLSIILTGAALIREREHGTIEHLLVMPV+PAEIMLAKVW+MG VVALAAL SLLL Sbjct: 184 INNVTMLSIILTGAALIREREHGTIEHLLVMPVTPAEIMLAKVWSMGVVVALAALASLLL 243 Query: 247 IVRGALQVPIEGSLALFMLVTVLHLFATTSMGIFMATLARSMPQFGMLTVLVLLPLQLLS 306 IVRGAL VPIEGS+ALFMLVT LHLFATTSMGIFMATLARSMPQFGMLTVLVLLPLQLLS Sbjct: 244 IVRGALHVPIEGSVALFMLVTCLHLFATTSMGIFMATLARSMPQFGMLTVLVLLPLQLLS 303 Query: 307 GGSTPRESMPVPVQDIMLAAPTTHFVAAGQAILYRGAGLEVIWPQLLAILAIGLVLFVAA 366 GGSTPRESMPV VQDIMLAAPTTHFVAAGQAILYRGAGLEVIWPQLLAI IG VLF+AA Sbjct: 304 GGSTPRESMPVLVQDIMLAAPTTHFVAAGQAILYRGAGLEVIWPQLLAIFGIGAVLFMAA 363 Query: 367 LGRFRKTISQMA 378 LGRFRKTISQMA Sbjct: 364 LGRFRKTISQMA 375 >ref|ZP_04764548.1| ABC-2 type transporter [Acidovorax delafieldii 2AN] gb|EER58647.1| ABC-2 type transporter [Acidovorax delafieldii 2AN] Length = 376 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 280/378 (74%), Positives = 324/378 (85%), Gaps = 2/378 (0%) Query: 1 MRRAPASLSNIFRLGVKELWSLLRDPAMLVLIAYTFTLSIYVAATAMPESLHNAAIAVVD 60 MRRA S++N++RLG+KELWSL+RDP MLVLIAYTFT+SIYVAATAMPE LH AAIA+VD Sbjct: 1 MRRA--SIANVWRLGIKELWSLVRDPMMLVLIAYTFTVSIYVAATAMPEGLHKAAIAIVD 58 Query: 61 NDGSPLSARIASLFYPPHFKVARLVTAREADAGLDAGDFTFVLDIPADFQRDVLAGRAPA 120 D SPLSARI FYPP F RL+T E DAG+D G +TFVLDIP +FQR+VLAG P+ Sbjct: 59 EDDSPLSARIVGSFYPPQFITPRLITLAEMDAGMDNGHYTFVLDIPPNFQREVLAGLTPS 118 Query: 121 VQLNVDATRMSQAFTGNSYIQQMVSNEVTQFVRRSEAAGDAPVGLALRMRFNPNLEQSWF 180 +QLNVDATRMSQAFTG+ Y+QQ+V+ EV++FV+R PV L +RMRFNPNLE +WF Sbjct: 119 IQLNVDATRMSQAFTGSGYVQQIVAAEVSEFVQRYRGGTQLPVDLNVRMRFNPNLEHAWF 178 Query: 181 GSLMEIINNVTMLSIILTGAALIREREHGTIEHLLVMPVSPAEIMLAKVWAMGSVVALAA 240 G+LMEIINNVTMLSIILTGAALIREREHGTIEHLLVMPV+P EIMLAKVW+MG VV LAA Sbjct: 179 GALMEIINNVTMLSIILTGAALIREREHGTIEHLLVMPVTPGEIMLAKVWSMGLVVLLAA 238 Query: 241 LMSLLLIVRGALQVPIEGSLALFMLVTVLHLFATTSMGIFMATLARSMPQFGMLTVLVLL 300 L++L+ +V+GAL VP++GS+ LFM + LHLFATTSMGIF+AT+ARSMPQFGML VL L+ Sbjct: 239 LVALVFVVQGALHVPVQGSVLLFMGLAALHLFATTSMGIFLATVARSMPQFGMLLVLTLV 298 Query: 301 PLQLLSGGSTPRESMPVPVQDIMLAAPTTHFVAAGQAILYRGAGLEVIWPQLLAILAIGL 360 PLQLLSGG TPRESMP VQ++MLAAPTTHFV A QAILYRGAGL+V+WPQ LAILAIG Sbjct: 299 PLQLLSGGVTPRESMPTLVQNVMLAAPTTHFVTAAQAILYRGAGLDVVWPQWLAILAIGG 358 Query: 361 VLFVAALGRFRKTISQMA 378 VLF A+L RFRKTISQMA Sbjct: 359 VLFTASLARFRKTISQMA 376 >ref|YP_001100833.1| putative ABC transport system membrane protein [Herminiimonas arsenicoxydans] emb|CAL62712.1| ABC-2 type transporter, permease [Herminiimonas arsenicoxydans] Length = 376 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 282/372 (75%), Positives = 326/372 (87%) Query: 7 SLSNIFRLGVKELWSLLRDPAMLVLIAYTFTLSIYVAATAMPESLHNAAIAVVDNDGSPL 66 S+ NI+RLG+KELWSL+RDP MLVLI YTFT++IYVAATAMPE+LHNA IA+VD D SPL Sbjct: 5 SIVNIYRLGIKELWSLVRDPTMLVLIVYTFTVAIYVAATAMPENLHNAVIAIVDEDDSPL 64 Query: 67 SARIASLFYPPHFKVARLVTAREADAGLDAGDFTFVLDIPADFQRDVLAGRAPAVQLNVD 126 SARI S FYPPHFK RL++ E D G+D GD+TFVLDIPA+FQRDVLAGRAPA QLNVD Sbjct: 65 SARIVSSFYPPHFKTPRLISLAEMDIGMDNGDYTFVLDIPANFQRDVLAGRAPAAQLNVD 124 Query: 127 ATRMSQAFTGNSYIQQMVSNEVTQFVRRSEAAGDAPVGLALRMRFNPNLEQSWFGSLMEI 186 ATRMSQAFTG+ Y+QQ+V+ EV +FV+R + PV L LRMRFNPNLEQSWFGSLMEI Sbjct: 125 ATRMSQAFTGSGYVQQIVAAEVNEFVQRHRGSTSLPVELNLRMRFNPNLEQSWFGSLMEI 184 Query: 187 INNVTMLSIILTGAALIREREHGTIEHLLVMPVSPAEIMLAKVWAMGSVVALAALMSLLL 246 IN+VTMLSIILTGAALIREREHGTIEHLLVMPV+PAEIMLAK+WAM VV LAA +S+L Sbjct: 185 INSVTMLSIILTGAALIREREHGTIEHLLVMPVTPAEIMLAKIWAMALVVLLAASVSILF 244 Query: 247 IVRGALQVPIEGSLALFMLVTVLHLFATTSMGIFMATLARSMPQFGMLTVLVLLPLQLLS 306 +V+ AL+VP++GS+ALFM VT LHLFATTSMGIFMAT+ARSMPQFGML VLVLLPL++LS Sbjct: 245 VVQLALRVPVQGSIALFMAVTALHLFATTSMGIFMATVARSMPQFGMLMVLVLLPLEMLS 304 Query: 307 GGSTPRESMPVPVQDIMLAAPTTHFVAAGQAILYRGAGLEVIWPQLLAILAIGLVLFVAA 366 GG TPRESMP VQ +ML APTTHFV+A QAIL+RGAGL+V+WPQ+LAI+ IG +LF+A+ Sbjct: 305 GGMTPRESMPWVVQQLMLVAPTTHFVSAAQAILFRGAGLDVVWPQVLAIIVIGALLFMAS 364 Query: 367 LGRFRKTISQMA 378 L RFRKTIS MA Sbjct: 365 LRRFRKTISLMA 376 >ref|YP_003158681.1| ABC-2 type transporter [Desulfomicrobium baculatum DSM 4028] gb|ACU90265.1| ABC-2 type transporter [Desulfomicrobium baculatum DSM 4028] Length = 374 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 281/371 (75%), Positives = 324/371 (87%) Query: 8 LSNIFRLGVKELWSLLRDPAMLVLIAYTFTLSIYVAATAMPESLHNAAIAVVDNDGSPLS 67 + N+ RLGVKELWSL+RDP MLVLIAYTFT +IYVAATAMPESLHNA IA+VD DGSPLS Sbjct: 4 IENVLRLGVKELWSLVRDPIMLVLIAYTFTFAIYVAATAMPESLHNAPIAIVDEDGSPLS 63 Query: 68 ARIASLFYPPHFKVARLVTAREADAGLDAGDFTFVLDIPADFQRDVLAGRAPAVQLNVDA 127 ARI S FYPP FK ++ + D+G+D GD+TFVLDIP FQRDVLAGR PA+QLN+DA Sbjct: 64 ARIVSSFYPPRFKTPAMIALAQIDSGMDRGDYTFVLDIPPGFQRDVLAGRMPAIQLNIDA 123 Query: 128 TRMSQAFTGNSYIQQMVSNEVTQFVRRSEAAGDAPVGLALRMRFNPNLEQSWFGSLMEII 187 T MSQAFTGN YIQQ+V+ EV +FV+R + PV L LRMRFNPNLE+SWFGSLMEII Sbjct: 124 TLMSQAFTGNGYIQQIVAGEVGEFVQRYRSTEVPPVELLLRMRFNPNLEKSWFGSLMEII 183 Query: 188 NNVTMLSIILTGAALIREREHGTIEHLLVMPVSPAEIMLAKVWAMGSVVALAALMSLLLI 247 NNVTMLSIILTGAALIREREHGTIEHLLVMPV+PAEIMLAKVW+MG VV LAA+++L+ + Sbjct: 184 NNVTMLSIILTGAALIREREHGTIEHLLVMPVTPAEIMLAKVWSMGLVVLLAAMVALVFV 243 Query: 248 VRGALQVPIEGSLALFMLVTVLHLFATTSMGIFMATLARSMPQFGMLTVLVLLPLQLLSG 307 V+G LQVP++GS+ALF++ T LHLFATTSMGIF+ATLARSMPQFGML VLVLLPLQLLSG Sbjct: 244 VQGVLQVPVQGSVALFIVATALHLFATTSMGIFLATLARSMPQFGMLLVLVLLPLQLLSG 303 Query: 308 GSTPRESMPVPVQDIMLAAPTTHFVAAGQAILYRGAGLEVIWPQLLAILAIGLVLFVAAL 367 G+TPRESMP VQ++ML APTT+FV+AGQAILYRGAG++V+WPQ LAI AIG +LF AAL Sbjct: 304 GATPRESMPELVQNVMLIAPTTYFVSAGQAILYRGAGIDVVWPQFLAIAAIGTLLFFAAL 363 Query: 368 GRFRKTISQMA 378 RFRKTI+QMA Sbjct: 364 ARFRKTITQMA 374 >ref|YP_002552957.1| ABC transporter [Acidovorax ebreus TPSY] gb|ACM32957.1| ABC-2 type transporter [Acidovorax ebreus TPSY] Length = 382 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 271/371 (73%), Positives = 311/371 (83%) Query: 8 LSNIFRLGVKELWSLLRDPAMLVLIAYTFTLSIYVAATAMPESLHNAAIAVVDNDGSPLS 67 L NI+RLGVKELWSLLRDP MLVLI Y FTLS+Y AATAMPE LH A IA+VD D S LS Sbjct: 12 LLNIYRLGVKELWSLLRDPTMLVLIVYVFTLSVYAAATAMPEILHKAPIAIVDEDQSQLS 71 Query: 68 ARIASLFYPPHFKVARLVTAREADAGLDAGDFTFVLDIPADFQRDVLAGRAPAVQLNVDA 127 RI S FYPP F L+TARE DAG+DAG +TFVL+IP DFQRDVLAGRA VQLNVDA Sbjct: 72 QRIVSAFYPPQFNTPALITAREMDAGMDAGHYTFVLNIPPDFQRDVLAGRAAEVQLNVDA 131 Query: 128 TRMSQAFTGNSYIQQMVSNEVTQFVRRSEAAGDAPVGLALRMRFNPNLEQSWFGSLMEII 187 TRMSQAF+GN+Y+QQ+V +EV++FV+R PV LALRMRFNP L+++WFGSLMEII Sbjct: 132 TRMSQAFSGNAYVQQIVLSEVSEFVQRYRGTAAPPVDLALRMRFNPALDKAWFGSLMEII 191 Query: 188 NNVTMLSIILTGAALIREREHGTIEHLLVMPVSPAEIMLAKVWAMGSVVALAALMSLLLI 247 N+VTMLSIILTGAALIREREHGTIEHLLVMPV+P EIMLAKVW+M VV LAA SL+L+ Sbjct: 192 NSVTMLSIILTGAALIREREHGTIEHLLVMPVTPTEIMLAKVWSMALVVLLAATTSLVLV 251 Query: 248 VRGALQVPIEGSLALFMLVTVLHLFATTSMGIFMATLARSMPQFGMLTVLVLLPLQLLSG 307 V+G L+VPI GSL LF+ LHLFATTSMGIFMAT+ARSMPQFG+L VL L+PL++LSG Sbjct: 252 VQGLLRVPIGGSLGLFLAGAALHLFATTSMGIFMATVARSMPQFGLLMVLTLIPLEMLSG 311 Query: 308 GSTPRESMPVPVQDIMLAAPTTHFVAAGQAILYRGAGLEVIWPQLLAILAIGLVLFVAAL 367 G+TPRESMP VQD+MLAAPTTHFV GQAILYRGAG++V+WPQ LA++ IG VLF +L Sbjct: 312 GTTPRESMPALVQDLMLAAPTTHFVELGQAILYRGAGMDVVWPQFLALVGIGSVLFALSL 371 Query: 368 GRFRKTISQMA 378 RFR+TIS MA Sbjct: 372 ARFRRTISSMA 382