BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2229.p (485 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775247.1| outer membrane drug efflux lipoprotein [Herb... 565 e-159 ref|YP_003158678.1| NodT family RND efflux system outer membrane... 494 e-137 ref|YP_001100836.1| putative outer membrane transport protein in... 481 e-133 ref|YP_544281.1| RND efflux system, outer membrane lipoprotein, ... 480 e-133 ref|ZP_06688915.1| outer membrane efflux protein OprM [Achromoba... 477 e-132 >ref|YP_003775247.1| outer membrane drug efflux lipoprotein [Herbaspirillum seropedicae SmR1] gb|ADJ63339.1| outer membrane drug efflux lipoprotein [Herbaspirillum seropedicae SmR1] Length = 491 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 365/452 (80%), Positives = 400/452 (88%), Gaps = 7/452 (1%) Query: 26 ACQSMAPDYQRPAAPVAAHYPQ-------QSDGQSEAAPALGWQAWFRDPQLQALITQAL 78 ACQS+AP YQRPAAPVAA YP A+P L W+ +F DP LQALITQAL Sbjct: 24 ACQSLAPHYQRPAAPVAAVYPDGPVNEAAHQVANEAASPPLPWRDYFTDPPLQALITQAL 83 Query: 79 ANNRDLRAAALRVEEARALYGIQRADLFPAVGAQAGLDRSRTPADLNLTGRPLVGSAYQA 138 N+RDLR AALRV+EA+ALYGI ADLFP +GAQAGLDRSRTPADLNLT RPLVGSAYQA Sbjct: 84 ENSRDLRTAALRVQEAQALYGIGHADLFPTIGAQAGLDRSRTPADLNLTRRPLVGSAYQA 143 Query: 139 GVGLSTWELDLWGRLRSLDDAALHTALASEATRRAAALSLVAQVADAWLELAEIDERLAI 198 G+GLS+WE+DLWGRLRSLDDAAL +A AS+ATR A ALSL+AQVADAWLELAE+DERL I Sbjct: 144 GLGLSSWEIDLWGRLRSLDDAALESARASQATRSAVALSLMAQVADAWLELAELDERLEI 203 Query: 199 ARDTIASRQESYRIFARRVEVGATSRLNLTQIETLLTQAQALGAQLEQQRAQRLNALTLL 258 A TIASRQES+RIF+RRVEVGATSRLNLTQIETLLTQAQALGAQL+QQRAQRLNALTLL Sbjct: 204 ANQTIASRQESFRIFSRRVEVGATSRLNLTQIETLLTQAQALGAQLQQQRAQRLNALTLL 263 Query: 259 VGSPLELPVGQARPALDAAFPALSPGTPSLLLTRRPDVAAAEHRLQAANANIGAARAAFF 318 VGSP+ LPVGQAR LDA F L PG P+LLLTRRPDVAAAEHRL AANANIGAARAAFF Sbjct: 264 VGSPVVLPVGQARAGLDAVFAPLQPGLPALLLTRRPDVAAAEHRLMAANANIGAARAAFF 323 Query: 319 PSISLTGNLGTASAELSGLFRDGSHAWSFSPSLSLPIFTAGRLRNNLNLAEVRRDLAVAN 378 PSISLTGN+GTASAELSGLFRDGSHAW+FSPS++LPIFTAGRLRNNL L+EVRRDLAVA Sbjct: 324 PSISLTGNVGTASAELSGLFRDGSHAWTFSPSITLPIFTAGRLRNNLALSEVRRDLAVAA 383 Query: 379 YEKTIQSAFRDVADALAAHQWLSRQLAIAETAEQVQAERARLSTLRYDNGAAPFLDVLDA 438 YEKT+Q+AFR+VADALAA QWL++QL IA++A +VQ ERARLS LRYDNGAAPFLDVLDA Sbjct: 384 YEKTVQTAFREVADALAARQWLTQQLEIAQSAVRVQRERARLSALRYDNGAAPFLDVLDA 443 Query: 439 QRDLLSARQQRVQIRRALLSSSVALYAALGGD 470 QRDLLSA+QQ VQIRRALLSSSVALYAALGG+ Sbjct: 444 QRDLLSAQQQLVQIRRALLSSSVALYAALGGE 475 >ref|YP_003158678.1| NodT family RND efflux system outer membrane lipoprotein [Desulfomicrobium baculatum DSM 4028] gb|ACU90262.1| RND efflux system, outer membrane lipoprotein, NodT family [Desulfomicrobium baculatum DSM 4028] Length = 479 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 292/463 (63%), Positives = 356/463 (76%) Query: 16 LLAALPLLLVACQSMAPDYQRPAAPVAAHYPQQSDGQSEAAPALGWQAWFRDPQLQALIT 75 L A +LL C SMAP Y+ PA PVA Y + +A A+GW+ +F DP LQ LI Sbjct: 13 LCIAAMILLSGCASMAPRYEAPALPVAPIYAPDNAQDGASASAIGWRDYFIDPSLQNLIQ 72 Query: 76 QALANNRDLRAAALRVEEARALYGIQRADLFPAVGAQAGLDRSRTPADLNLTGRPLVGSA 135 +AL NNRDLR A LRVEEARA++GIQR++LFP VG QAG DRSRTPADLN+TG+ L S Sbjct: 73 RALDNNRDLRTAVLRVEEARAVHGIQRSELFPTVGIQAGEDRSRTPADLNMTGKTLFASQ 132 Query: 136 YQAGVGLSTWELDLWGRLRSLDDAALHTALASEATRRAAALSLVAQVADAWLELAEIDER 195 +QAG+G+++WELD WGR+RSL DAAL LA++A RRAAAL LVAQVAD++ L E DER Sbjct: 133 FQAGLGMASWELDFWGRVRSLQDAALENFLATDAARRAAALGLVAQVADSYFRLLEFDER 192 Query: 196 LAIARDTIASRQESYRIFARRVEVGATSRLNLTQIETLLTQAQALGAQLEQQRAQRLNAL 255 +A+A TIASR ES+RIF RRVEVG+TSR +LTQ++TLLTQAQALGAQLEQ+R + +AL Sbjct: 193 IALAHQTIASRTESFRIFTRRVEVGSTSRFSLTQVQTLLTQAQALGAQLEQEREAQFHAL 252 Query: 256 TLLVGSPLELPVGQARPALDAAFPALSPGTPSLLLTRRPDVAAAEHRLQAANANIGAARA 315 TLLVG+ ++ P Q +P + PG PS LL +RPD+ AAEHRL+AANANIGAARA Sbjct: 253 TLLVGATIDPPPEQDQPGERNTLVRVRPGLPSDLLFQRPDIVAAEHRLKAANANIGAARA 312 Query: 316 AFFPSISLTGNLGTASAELSGLFRDGSHAWSFSPSLSLPIFTAGRLRNNLNLAEVRRDLA 375 AFFP I+LTG+LGTASAEL LF GS AW FSPS+SLPIF G NL+LAE+R D+ Sbjct: 313 AFFPRIALTGSLGTASAELGDLFAAGSLAWIFSPSISLPIFDGGLRSANLSLAEIRLDMN 372 Query: 376 VANYEKTIQSAFRDVADALAAHQWLSRQLAIAETAEQVQAERARLSTLRYDNGAAPFLDV 435 VANYEKT+Q+AFRDVADAL+A WL+RQ++IA+ A + Q ERARLS LRYDNGA+ +L+V Sbjct: 373 VANYEKTVQAAFRDVADALSARHWLARQVSIAQAALETQTERARLSQLRYDNGASAYLEV 432 Query: 436 LDAQRDLLSARQQRVQIRRALLSSSVALYAALGGDSNSPAAFP 478 LDAQRDLL Q+ VQ+RRALL+S V+LYAALGG S + P Sbjct: 433 LDAQRDLLDTEQRLVQMRRALLTSHVSLYAALGGGSMDFVSTP 475 >ref|YP_001100836.1| putative outer membrane transport protein involved in copper (silver) tolerance (cusC) [Herminiimonas arsenicoxydans] emb|CAL62715.1| Outer membrane protein oprM [Herminiimonas arsenicoxydans] Length = 502 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 305/455 (67%), Positives = 358/455 (78%) Query: 15 PLLAALPLLLVACQSMAPDYQRPAAPVAAHYPQQSDGQSEAAPALGWQAWFRDPQLQALI 74 P++ A+ L L +C SMAP Y PA PVAAHYP + AA A+GW+ +F D +LQ LI Sbjct: 20 PVMVAVVLALASCASMAPPYAAPALPVAAHYPSDVNQDGAAAAAMGWRDYFTDARLQDLI 79 Query: 75 TQALANNRDLRAAALRVEEARALYGIQRADLFPAVGAQAGLDRSRTPADLNLTGRPLVGS 134 QAL NNRDLRAA LRVEEARA YGIQRA+ FPA+ AQAG +R+ PADL+LTG+P + S Sbjct: 80 AQALENNRDLRAAVLRVEEARAAYGIQRAEQFPAIAAQAGSERAHVPADLSLTGKPAMSS 139 Query: 135 AYQAGVGLSTWELDLWGRLRSLDDAALHTALASEATRRAAALSLVAQVADAWLELAEIDE 194 Y +GL++WE+D WGR+RSL DAAL LAS+ RRA +SLVAQVA+++L L E+DE Sbjct: 140 QYHVSLGLASWEIDFWGRVRSLRDAALENYLASDEARRAVTISLVAQVANSYLALCELDE 199 Query: 195 RLAIARDTIASRQESYRIFARRVEVGATSRLNLTQIETLLTQAQALGAQLEQQRAQRLNA 254 R+A+AR TIASR+ES RIF RRVEVG+TSRLNLTQ++TLL+QAQALGAQLEQ RA + NA Sbjct: 200 RIALARLTIASREESLRIFTRRVEVGSTSRLNLTQVQTLLSQAQALGAQLEQARALQANA 259 Query: 255 LTLLVGSPLELPVGQARPALDAAFPALSPGTPSLLLTRRPDVAAAEHRLQAANANIGAAR 314 L LLVG LELP +R L PG PS LL RRPD+ AAEH+L+AA+A IGAAR Sbjct: 260 LILLVGVTLELPATSSRLDERQMLLPLQPGLPSDLLIRRPDIVAAEHQLKAAHAQIGAAR 319 Query: 315 AAFFPSISLTGNLGTASAELSGLFRDGSHAWSFSPSLSLPIFTAGRLRNNLNLAEVRRDL 374 AAFFP I+LTG+ GTASAEL GLF GS AW+F+PS+SLP+F AGR NNL+LAE RRDL Sbjct: 320 AAFFPRIALTGSFGTASAELDGLFAAGSRAWTFAPSISLPLFDAGRRSNNLSLAEARRDL 379 Query: 375 AVANYEKTIQSAFRDVADALAAHQWLSRQLAIAETAEQVQAERARLSTLRYDNGAAPFLD 434 AVANYEKTIQ+AFRDVADALAA QWL++QL IA+ A Q ERARLS LRYDNGAA +LD Sbjct: 380 AVANYEKTIQAAFRDVADALAARQWLAQQLLIAQAALTTQTERARLSQLRYDNGAAAYLD 439 Query: 435 VLDAQRDLLSARQQRVQIRRALLSSSVALYAALGG 469 VLDAQRDLL A QQ VQIRRALLSS V+LYAALGG Sbjct: 440 VLDAQRDLLVAEQQLVQIRRALLSSQVSLYAALGG 474 >ref|YP_544281.1| RND efflux system, outer membrane lipoprotein, NodT [Methylobacillus flagellatus KT] gb|ABE48440.1| RND efflux system, outer membrane lipoprotein, NodT [Methylobacillus flagellatus KT] Length = 493 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 277/458 (60%), Positives = 343/458 (74%), Gaps = 1/458 (0%) Query: 26 ACQSMAPDYQRPAAPVAAHYPQQSDGQSEAAPALGWQAWFRDPQLQALITQALANNRDLR 85 CQSMAPDY+RPAAPVA H+PQ G ++A P+L WQ +F D LQ LI +ALANNRDLR Sbjct: 30 GCQSMAPDYERPAAPVAEHFPQAGTGTADA-PSLAWQDYFADTTLQDLIQEALANNRDLR 88 Query: 86 AAALRVEEARALYGIQRADLFPAVGAQAGLDRSRTPADLNLTGRPLVGSAYQAGVGLSTW 145 +A RVE ARALYG+QRADLFP + AQ RSRTP D++L GRP+V S Y+ G G++ W Sbjct: 89 SAIQRVEGARALYGVQRADLFPGLNAQGSFGRSRTPEDMSLIGRPMVLSEYRVGFGITNW 148 Query: 146 ELDLWGRLRSLDDAALHTALASEATRRAAALSLVAQVADAWLELAEIDERLAIARDTIAS 205 ELD WGR+RSL DAAL T LA+E+ +RA+A+SLVAQVA+++L L E+D+R+ IA TI S Sbjct: 149 ELDFWGRIRSLRDAALETFLAAESAQRASAISLVAQVANSYLNLRELDQRILIAEKTIES 208 Query: 206 RQESYRIFARRVEVGATSRLNLTQIETLLTQAQALGAQLEQQRAQRLNALTLLVGSPLEL 265 RQES RIF RR +VG+TS+L+L Q++ LL QAQ L QL+Q RA LNALTLLVG P++L Sbjct: 209 RQESVRIFQRRFDVGSTSKLDLKQVQALLAQAQTLRYQLQQSRAIELNALTLLVGKPVDL 268 Query: 266 PVGQARPALDAAFPALSPGTPSLLLTRRPDVAAAEHRLQAANANIGAARAAFFPSISLTG 325 P + L PG PS +LT+RPD+ AAEH L++ANANIGAARAAFFP ++LT Sbjct: 269 PPASHAFSETKMLHQLKPGLPSDVLTQRPDIIAAEHILKSANANIGAARAAFFPRVTLTT 328 Query: 326 NLGTASAELSGLFRDGSHAWSFSPSLSLPIFTAGRLRNNLNLAEVRRDLAVANYEKTIQS 385 +LGTAS EL GLF GSHAWSF+PS+SLPIF R R+NL LA VRRDLAV +YE+TIQ+ Sbjct: 329 SLGTASRELDGLFDTGSHAWSFAPSISLPIFDGWRNRSNLELANVRRDLAVTSYEQTIQT 388 Query: 386 AFRDVADALAAHQWLSRQLAIAETAEQVQAERARLSTLRYDNGAAPFLDVLDAQRDLLSA 445 AFR+VADALAA + +QL + QAERARL+ LRYD+GA + +VLDA+R LL Sbjct: 389 AFREVADALAAQHSIRQQLVSQQEMLDAQAERARLAKLRYDHGATSYFEVLDAERSLLEV 448 Query: 446 RQQRVQIRRALLSSSVALYAALGGDSNSPAAFPLSSGP 483 QQ VQ++RAL SS V+LYAALGG S+S P S+ P Sbjct: 449 EQQLVQMQRALFSSQVSLYAALGGGSHSITVPPPSTTP 486 >ref|ZP_06688915.1| outer membrane efflux protein OprM [Achromobacter piechaudii ATCC 43553] gb|EFF74158.1| outer membrane efflux protein OprM [Achromobacter piechaudii ATCC 43553] Length = 509 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 292/458 (63%), Positives = 354/458 (77%), Gaps = 1/458 (0%) Query: 26 ACQSMAPDYQRPAAPVAAHYPQQSDGQSEA-APALGWQAWFRDPQLQALITQALANNRDL 84 C SMAP Y+RPA PVA+ Y + S ++ A +GW+++F DP LQ LIT+ALANNRDL Sbjct: 31 GCVSMAPTYERPALPVASTYSEPSQAEAGINAARVGWRSYFTDPVLQGLITEALANNRDL 90 Query: 85 RAAALRVEEARALYGIQRADLFPAVGAQAGLDRSRTPADLNLTGRPLVGSAYQAGVGLST 144 R A LRVEEARALYGIQRAD FP +G QA RSRTP DLNLTG+P+VGS YQAGVG+++ Sbjct: 91 RQALLRVEEARALYGIQRADQFPTIGVQAEGARSRTPGDLNLTGQPMVGSQYQAGVGMAS 150 Query: 145 WELDLWGRLRSLDDAALHTALASEATRRAAALSLVAQVADAWLELAEIDERLAIARDTIA 204 WELD WGR+RSL DAAL LAS+A RAA LSL+AQVAD++L L E+DERLA+ R+TIA Sbjct: 151 WELDFWGRVRSLKDAALENYLASDAAARAATLSLIAQVADSYLTLRELDERLALTRETIA 210 Query: 205 SRQESYRIFARRVEVGATSRLNLTQIETLLTQAQALGAQLEQQRAQRLNALTLLVGSPLE 264 SR ES RIF RR EVG+ S+L+LTQ+ETL QA+ALGA+LEQ RA + +AL LVG PL+ Sbjct: 211 SRGESLRIFRRRYEVGSISKLDLTQVETLWQQARALGAELEQARATQAHALEQLVGKPLD 270 Query: 265 LPVGQARPALDAAFPALSPGTPSLLLTRRPDVAAAEHRLQAANANIGAARAAFFPSISLT 324 LP+ +A DA L G PS LLT+RPD+ AAEH+L+AANANIGAARAAFFP I+LT Sbjct: 271 LPLPKAGLDDDAVMLDLPAGLPSDLLTQRPDIVAAEHQLRAANANIGAARAAFFPRITLT 330 Query: 325 GNLGTASAELSGLFRDGSHAWSFSPSLSLPIFTAGRLRNNLNLAEVRRDLAVANYEKTIQ 384 G GTASAEL+GLF GS AWSF+PSL LPIF AGR L+LA+VRRD AVA YE++IQ Sbjct: 331 GAFGTASAELNGLFGSGSGAWSFAPSLDLPIFDAGRRSATLDLADVRRDQAVARYEQSIQ 390 Query: 385 SAFRDVADALAAHQWLSRQLAIAETAEQVQAERARLSTLRYDNGAAPFLDVLDAQRDLLS 444 SAF+DV+DALAA WL+ Q+ + Q+ERARL+ LRYD+GA+P+L+VLDAQRDLL+ Sbjct: 391 SAFKDVSDALAARHWLAEQVQVLRATVAAQSERARLAKLRYDHGASPYLEVLDAQRDLLT 450 Query: 445 ARQQRVQIRRALLSSSVALYAALGGDSNSPAAFPLSSG 482 A+Q VQ RRALLS+ V LYAALGG + + A P S Sbjct: 451 AQQALVQTRRALLSARVGLYAALGGGTQADAPLPTQSA 488