BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2228.p         (105 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775243.1| histidine-containing phosphotransfer (HPt) d...   147   6e-34
ref|ZP_08275167.1| hypothetical protein IMCC9480_18 [Oxalobacter...    54   9e-06

>ref|YP_003775243.1| histidine-containing phosphotransfer (HPt) domain-containing
           protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63335.1| histidine-containing phosphotransfer (HPt) domain protein
           [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 90/105 (85%), Positives = 94/105 (89%)

Query: 1   MGGDAAACRHMFGTFAQSAPATFDRLEQAIRADDAAQVKREAHSLKSMTALVGAGVLTEL 60
           MGGDA ACRHMFGTFA+SAPA F RLE AI ADDAAQVKREAHSLKSMTALVGAGVLTEL
Sbjct: 18  MGGDATACRHMFGTFAKSAPANFARLEAAILADDAAQVKREAHSLKSMTALVGAGVLTEL 77

Query: 61  LKSVETQSRAEPPQSAQPQLPELQSLFTAVAAEVRHYVDQVGVAQ 105
           LKS+E QSRAEP QSAQP+L ELQSLF A AAEV+HYVDQVGVA 
Sbjct: 78  LKSIEVQSRAEPAQSAQPRLAELQSLFAATAAEVQHYVDQVGVAH 122


>ref|ZP_08275167.1| hypothetical protein IMCC9480_18 [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31362.1| hypothetical protein IMCC9480_18 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 132

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 50/108 (46%), Gaps = 4/108 (3%)

Query: 2   GGDAAACRHMFGTFAQSAPATFDRLEQAIRADDAAQVKREAHSLKSMTALVGAGVLTELL 61
           G D    R +   F   A     RLE A++  D+     E+HSLK  T+LVGA  L+ LL
Sbjct: 19  GDDLELFRELSAMFVTLAGPVHARLELAMQNGDSKATHFESHSLKGSTSLVGARGLSALL 78

Query: 62  KSVETQSRAEPPQSAQPQLPELQSLFTAVAAEV----RHYVDQVGVAQ 105
             +E  +R E      P LPEL  LF  V  EV     H+  Q G  +
Sbjct: 79  GEIEAHARRERNDLILPCLPELNRLFALVLDEVNFSLEHFDGQSGAGE 126