BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2224.p         (174 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775238.1| signal peptide protein [Herbaspirillum serop...   212   2e-53

>ref|YP_003775238.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63330.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
          Length = 173

 Score =  212 bits (539), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 106/170 (62%), Positives = 127/170 (74%), Gaps = 1/170 (0%)

Query: 1   MKLLPIIYLLVLSPLAQAQINIGFYKQEKSGLSLYTTAPLTAIHRIALCADPSDNPSACY 60
           MKL  +I L  L+PLAQAQI+IGFY+QE++GLSLYTTAPL  IH +  C DPSD  SAC+
Sbjct: 1   MKLALLICLAPLAPLAQAQIDIGFYRQERNGLSLYTTAPLNTIHTVMFCTDPSDGQSACH 60

Query: 61  WLKSNEFQQAEAVDDVMAEQTVMHYRMSRHISPGIKTGQGIAIINAEQVRRSANSSFIAI 120
            LK  +F QA  VD VMAEQ V HYR+S+ I P  KT QGIAIINA+QV ++AN +F  +
Sbjct: 61  TLKPYDFTQAAEVDFVMAEQRVRHYRISKRILPHAKTEQGIAIINAQQVTQTAN-AFSVL 119

Query: 121 AQRKHYKILICTGVEGINLELLDGPRKLHSLYFYLGYDTLPTCENTGPID 170
           AQR+ YKI  CTG EGINL+L DGP KL +LYFYLGYD  PTC++  P D
Sbjct: 120 AQRRRYKITTCTGSEGINLDLYDGPHKLRNLYFYLGYDITPTCDSASPSD 169