BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2221.p (490 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004154007.1| GntR family transcriptional regulator [Vario... 521 e-145 ref|YP_002973875.1| GntR family transcriptional regulator [Rhizo... 491 e-136 gb|EFV82759.1| GntR family transcriptional regulator [Achromobac... 489 e-136 gb|EGP45417.1| GntR family regulatory protein 37 [Achromobacter ... 486 e-135 ref|YP_003979247.1| GntR family transcriptional regulator [Achro... 474 e-131 >ref|YP_004154007.1| GntR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU35896.1| transcriptional regulator, GntR family with aminotransferase domain [Variovorax paradoxus EPS] Length = 474 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 297/487 (60%), Positives = 354/487 (72%), Gaps = 24/487 (4%) Query: 6 PSSLIRLDSSTGEAYYRQIYARLRSAVADGLLQPGDRIPSARALATELGLARGTVEAAYS 65 P+S+ LD + E YYRQIY RLRSA+A GLL+PGDRIPSARAL ELGLARGT++ AYS Sbjct: 7 PTSISPLDPTAVEPYYRQIYERLRSAIASGLLKPGDRIPSARALTKELGLARGTIDTAYS 66 Query: 66 LLAAEGYVEARGQAGTVIAAGVRPALQAAAGKATAAPSRTSPVAARHPLLPDEGQAE--- 122 LL AEGY++ARGQAGT++ G++P +PVA P++ D G + Sbjct: 67 LLTAEGYIQARGQAGTIVTPGLKP---------------RTPVAMPSPVI-DTGTSSIGF 110 Query: 123 -PKGPRPFQMGIPALDAFPRKIWARLAARAVRATQAADMLYPSPAGLMALRTEIARYLQL 181 P PFQMG+PALD FPRKIWARL AR RA Q +DM +PS G ALR EIA YLQ+ Sbjct: 111 RPYSILPFQMGLPALDEFPRKIWARLGARCARAMQPSDMTHPSVYGQPALRAEIAAYLQV 170 Query: 182 SRGIDCRAEQVFVTSGYRDSLNLITRTLLQPGDKIWVEDPGYAPTAALLREAGMQLAGIP 241 SRGI C A QVFVTSGYR S+ LI LL+ GD++W+EDPGY PT LL + + +P Sbjct: 171 SRGIHCAASQVFVTSGYRHSIELIGLALLKAGDRVWLEDPGYPPTRELLAQMHIATVPVP 230 Query: 242 VDGDGMQVEYGLRHAAHARAAVVTPAHQSPTCVALSLPRRLALLEWAAREQAWIVEDDYD 301 VD DGM V G+R A AR AVVTPAHQSP V+LSL RRLALL+WA R AWIVEDDYD Sbjct: 231 VDADGMVVAEGVRAAPRARMAVVTPAHQSPLGVSLSLQRRLALLDWAGRNNAWIVEDDYD 290 Query: 302 GEYRYVSRPLPALKSLDREDRVLYAGTFSKVLFPAIRLAYLVVPQSQVECFRRSAQLFSG 361 GEYRYVSRPLPALKSLDR+ RVLYAGTFSKVLFP++RLAYLVVPQ+QVE F + Q F+G Sbjct: 291 GEYRYVSRPLPALKSLDRDGRVLYAGTFSKVLFPSLRLAYLVVPQAQVERFEQIIQTFAG 350 Query: 362 AAPALTQHIVADFMAEGHFARHIQRMRRLYAQRRTMAIAGLEGVLHSHVRIDSPPGGMHL 421 +P LTQ IV F+ EGHFARHIQRMR+LYA+RR AGLE VL HV+ID+ PGGMHL Sbjct: 351 GSPELTQSIVTAFIKEGHFARHIQRMRKLYAERREATKAGLEKVLGKHVKIDALPGGMHL 410 Query: 422 LLRLQGRRSDRLLADKMRQHGMFSRALSECLLAPRPGVAP-MIMLSFTNIDSRRRAAELA 480 +LRL GR+SDR L +MR G+F+ ALSE + G P ++++FTNIDSR A +L Sbjct: 411 ILRLAGRQSDRKLMLRMRADGLFAEALSEW---QQIGKGPSALLVNFTNIDSRATAEKLG 467 Query: 481 RRILPLL 487 +RIL L+ Sbjct: 468 KRILALM 474 >ref|YP_002973875.1| GntR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS54336.1| transcriptional regulator, GntR family with aminotransferase domain [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 473 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 276/484 (57%), Positives = 341/484 (70%), Gaps = 30/484 (6%) Query: 12 LDSSTGEAYYRQIYARLRSAVADGLLQPGDRIPSARALATELGLARGTVEAAYSLLAAEG 71 LD + G +YRQIY R R+A+A GLL+PGDRIPSARAL ELGLARGT+E+AYSLLAAEG Sbjct: 12 LDPNAGVPFYRQIYDRFRAAIASGLLKPGDRIPSARALTKELGLARGTIESAYSLLAAEG 71 Query: 72 YVEARGQAGTVIAAGVR-------PALQAAAGKATAAPSRTSPVAARHPLLPDEGQAEPK 124 Y+E+ GQAGTV+ G+ PALQ + A E P Sbjct: 72 YIESHGQAGTVVTPGLSTLTPVPVPALQQISNAA-------------------EVSFRPD 112 Query: 125 GPRPFQMGIPALDAFPRKIWARLAARAVRATQAADMLYPSPAGLMALRTEIARYLQLSRG 184 PFQMG+PALDAFPRKIWARL A VRA Q +DM++P GL ALRTEIA YLQ+SRG Sbjct: 113 SILPFQMGLPALDAFPRKIWARLGAGCVRAMQPSDMVHPPIYGLPALRTEIATYLQVSRG 172 Query: 185 IDCRAEQVFVTSGYRDSLNLITRTLLQPGDKIWVEDPGYAPTAALLREAGMQLAGIPVDG 244 I C QVF+TSGYR ++ LI TLL+ GD +W+EDPGY PT + R + + VD Sbjct: 173 IGCSPSQVFITSGYRHTIELIADTLLKAGDHVWLEDPGYPPTREIFRHMQITTVPVRVDQ 232 Query: 245 DGMQVEYGLRHAAHARAAVVTPAHQSPTCVALSLPRRLALLEWAAREQAWIVEDDYDGEY 304 DGM + GL+ A A AAVVTPAHQSP ++L LPRRLALL+WAA+ ++WI+EDDYDGEY Sbjct: 233 DGMVISDGLKAAHGAVAAVVTPAHQSPLGMSLILPRRLALLDWAAKSKSWIIEDDYDGEY 292 Query: 305 RYVSRPLPALKSLDREDRVLYAGTFSKVLFPAIRLAYLVVPQSQVECFRRSAQLFSGAAP 364 RYVSRPLPALKSLDR RVLY+GTFSKVLFP +RLAYLVVP+ VE F +Q +G +P Sbjct: 293 RYVSRPLPALKSLDRNGRVLYSGTFSKVLFPGLRLAYLVVPEDLVERFEHISQTLAGGSP 352 Query: 365 ALTQHIVADFMAEGHFARHIQRMRRLYAQRRTMAIAGLEGVLHSHVRIDSPPGGMHLLLR 424 LTQ IV F+ EGHFARHIQRMR+LYAQRR GLE VL H+ I S PGGMHL+L+ Sbjct: 353 ELTQAIVTAFIKEGHFARHIQRMRKLYAQRRKATAIGLETVLGKHMSIASQPGGMHLILQ 412 Query: 425 LQGRRSDRLLADKMRQHGMFSRALSE-CLLAPRPGVAPMIMLSFTNIDSRRRAAELARRI 483 L+ + SDRLL+ +MR+ G+++ AL++ +L+ P ++++FTNI S+ A LA+RI Sbjct: 413 LKNQHSDRLLSARMRESGLYAEALADWTMLSEAPAA---LLVNFTNIGSQSVAEHLAKRI 469 Query: 484 LPLL 487 L L+ Sbjct: 470 LQLM 473 >gb|EFV82759.1| GntR family transcriptional regulator [Achromobacter xylosoxidans C54] Length = 470 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 276/473 (58%), Positives = 334/473 (70%), Gaps = 15/473 (3%) Query: 15 STGEAYYRQIYARLRSAVADGLLQPGDRIPSARALATELGLARGTVEAAYSLLAAEGYVE 74 ++GE YRQ+Y R R A+ G L+PGDRIPSARALA +LG+ARGT+E AYSLL AEGYV+ Sbjct: 13 TSGEPLYRQVYERFRGAITQGTLKPGDRIPSARALAKDLGVARGTIEMAYSLLHAEGYVQ 72 Query: 75 ARGQAGTVIAAGVRPALQAAAGKATAAPSRTSPVAARHPLLPDEGQAEPKGPRPFQMGIP 134 RGQAGTV V P LQA + P +P P PFQMG+P Sbjct: 73 PRGQAGTV----VTPGLQAQPAARPSPPPARPDPDTWR---------QPPEPLPFQMGLP 119 Query: 135 ALDAFPRKIWARLAARAVRATQAADMLYPSPAGLMALRTEIARYLQLSRGIDCRAEQVFV 194 ALDAFPRKIWARL AR +RATQAAD+ YP GL ALRT IA +LQ++RGI C +QVF+ Sbjct: 120 ALDAFPRKIWARLGARHLRATQAADLSYPPADGLPALRTAIAAHLQVARGIHCTPDQVFI 179 Query: 195 TSGYRDSLNLITRTLLQPGDKIWVEDPGYAPTAALLREAGMQLAGIPVDGDGMQVEYGLR 254 TSGYR+SLNL+ + LLQPGD++WVEDPGY PT LL+ +G+ A + VD +G+ V G+ Sbjct: 180 TSGYRESLNLVIQALLQPGDQVWVEDPGYPPTRELLKHSGLTFAPVEVDSEGVIVSQGIA 239 Query: 255 HAAHARAAVVTPAHQSPTCVALSLPRRLALLEWAAREQAWIVEDDYDGEYRYVSRPLPAL 314 A ARAA+VTPAHQSP V LSL RR ALL+WA R Q WIVEDDYDGEYRYVSRPLPAL Sbjct: 240 QAPQARAAIVTPAHQSPLSVTLSLTRRQALLDWAERHQRWIVEDDYDGEYRYVSRPLPAL 299 Query: 315 KSLDREDRVLYAGTFSKVLFPAIRLAYLVVPQSQVECFRRSAQLFSGAAPALTQHIVADF 374 KSLDR RVLYAGTFSKV+FP IRLAYLV P + V+ F ++ P LTQ +V+ F Sbjct: 300 KSLDRHGRVLYAGTFSKVMFPGIRLAYLVAPAALVQRFEIVNRVLGNGIPGLTQALVSAF 359 Query: 375 MAEGHFARHIQRMRRLYAQRRTMAIAGLEGVLHSHVRIDSPPGGMHLLLRLQGRRSDRLL 434 M EGHFARHIQRMRRLYA+RR AGL V + ID PGGMHLL+R++GR +DR L Sbjct: 360 MTEGHFARHIQRMRRLYAERRNATAAGLAKVFGPGMPIDPQPGGMHLLVRMKGRHTDREL 419 Query: 435 ADKMRQHGMFSRALSECLLAPRPGVAPMIMLSFTNIDSRRRAAELARRILPLL 487 A +M +G+++ ALS A G +++SFTNI+S+ RA +L RRIL L+ Sbjct: 420 ARRMLSNGLYAHALSRWATAASCGSG--LLMSFTNIESQDRAEQLGRRILELM 470 >gb|EGP45417.1| GntR family regulatory protein 37 [Achromobacter xylosoxidans AXX-A] Length = 471 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 278/487 (57%), Positives = 339/487 (69%), Gaps = 21/487 (4%) Query: 1 MISLPPSSLIRLDSSTGEAYYRQIYARLRSAVADGLLQPGDRIPSARALATELGLARGTV 60 + SLPP++ S E YRQ+Y R R A+A G L+PGDRIPSARALA +LG+ARGT+ Sbjct: 6 LASLPPAA------SGDEPLYRQVYERFRGAIAQGTLKPGDRIPSARALAKDLGVARGTI 59 Query: 61 EAAYSLLAAEGYVEARGQAGTVIAAGVRPALQAAAGKATAAPSRTSPVAARHPLLPDEGQ 120 E AYSLL AEGYV+ RGQAGTV+ G+ A P + Sbjct: 60 EMAYSLLHAEGYVQPRGQAGTVVTPGLHAQAAPRPLPPPAKPDPDT-------------W 106 Query: 121 AEPKGPRPFQMGIPALDAFPRKIWARLAARAVRATQAADMLYPSPAGLMALRTEIARYLQ 180 +P PFQMG+PALDAFPRKIWARL AR +RATQAAD+ YP GL ALRT IA +LQ Sbjct: 107 RQPPTLLPFQMGLPALDAFPRKIWARLGARHLRATQAADLSYPPADGLPALRTAIAAHLQ 166 Query: 181 LSRGIDCRAEQVFVTSGYRDSLNLITRTLLQPGDKIWVEDPGYAPTAALLREAGMQLAGI 240 ++RGI C QVF+TSGYR+SLNL+ + LLQPGD++WVEDPGY PT LL+ +G+ LA + Sbjct: 167 VARGIHCAPAQVFITSGYRESLNLVIQALLQPGDEVWVEDPGYPPTRELLKHSGLALAPV 226 Query: 241 PVDGDGMQVEYGLRHAAHARAAVVTPAHQSPTCVALSLPRRLALLEWAAREQAWIVEDDY 300 VD +G+ V G+ A A AA+VTPAHQSP V LSL RR ALLEWA R Q WIVEDDY Sbjct: 227 EVDAEGIMVSRGIAQAPRASAAIVTPAHQSPLSVTLSLTRRQALLEWAERNQRWIVEDDY 286 Query: 301 DGEYRYVSRPLPALKSLDREDRVLYAGTFSKVLFPAIRLAYLVVPQSQVECFRRSAQLFS 360 DGEYRYVSRPLPALKSLDR RVLY GTFSKV+FP IRLAYLVVP++QV F ++ Sbjct: 287 DGEYRYVSRPLPALKSLDRHGRVLYTGTFSKVMFPGIRLAYLVVPEAQVRRFEDVNRVLG 346 Query: 361 GAAPALTQHIVADFMAEGHFARHIQRMRRLYAQRRTMAIAGLEGVLHSHVRIDSPPGGMH 420 P LTQ +V+ FM EGHFARHIQRMRRLY++RR AGL V + I+ PGGMH Sbjct: 347 NGIPGLTQALVSTFMLEGHFARHIQRMRRLYSERRDATAAGLAKVFGPAMPINPQPGGMH 406 Query: 421 LLLRLQGRRSDRLLADKMRQHGMFSRALSECLLAPRPGVAPMIMLSFTNIDSRRRAAELA 480 LL+R+QG ++DR LA +M +HG+++ ALS A G +++SFTNI+S+ RA +L Sbjct: 407 LLVRMQGHQTDRPLAQRMVEHGIYAHALSRWTTAAPCGAG--LLMSFTNIESQERAEQLG 464 Query: 481 RRILPLL 487 RRIL L+ Sbjct: 465 RRILELM 471 >ref|YP_003979247.1| GntR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP16532.1| bacterial regulatory protein, GntR family protein 37 [Achromobacter xylosoxidans A8] Length = 476 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 273/483 (56%), Positives = 337/483 (69%), Gaps = 12/483 (2%) Query: 5 PPSSLIRLDSSTGEAYYRQIYARLRSAVADGLLQPGDRIPSARALATELGLARGTVEAAY 64 P + S E YRQ+Y R R A+A G L+PGDRIPSARALA ELG+ARGTVE AY Sbjct: 4 PQPQALPASSGDAEPLYRQVYERFRGAIAQGTLKPGDRIPSARALAKELGVARGTVEVAY 63 Query: 65 SLLAAEGYVEARGQAGTVIAAGVRPALQAAAGKATAAPSRTSPVAARHPLLPDEGQAEPK 124 SLLA+EGY++ARGQAGTV+A V+P A + G EP Sbjct: 64 SLLASEGYIQARGQAGTVVAPDVQPQHAPPPAAAVPPEAPGD----------GPGWREPS 113 Query: 125 GPRPFQMGIPALDAFPRKIWARLAARAVRATQAADMLYPSPAGLMALRTEIARYLQLSRG 184 G RPFQ+G+PALD FPRK+WARL AR +R QA D+ YP GL ALR+ A YLQ++RG Sbjct: 114 GLRPFQLGLPALDEFPRKLWARLGARQLRGLQAGDLAYPPSGGLPALRSVTAAYLQVARG 173 Query: 185 IDCRAEQVFVTSGYRDSLNLITRTLLQPGDKIWVEDPGYAPTAALLREAGMQLAGIPVDG 244 I C+ QVF+TSGY ++ LI +TL +PGD++W+EDPGY PT ALL +A ++ A +PVD Sbjct: 174 IHCQPSQVFITSGYNSTMALILQTLFEPGDQVWMEDPGYPPTRALLEQARLEPAPVPVDQ 233 Query: 245 DGMQVEYGLRHAAHARAAVVTPAHQSPTCVALSLPRRLALLEWAAREQAWIVEDDYDGEY 304 DG+ V G+ A AR AVVTPAHQSP ++LSLPRR ALL+WA R AWIVEDDYDGEY Sbjct: 234 DGIMVGAGIERAGQARGAVVTPAHQSPLSMSLSLPRRQALLDWAERRGAWIVEDDYDGEY 293 Query: 305 RYVSRPLPALKSLDREDRVLYAGTFSKVLFPAIRLAYLVVPQSQVECFRRSAQLFSGAAP 364 RYV RPLPALKSLD + RVLYAGTFSKVLFP +RLAYLVVP+ F +SA+L +GAAP Sbjct: 294 RYVGRPLPALKSLDTQGRVLYAGTFSKVLFPGLRLAYLVVPEPLAGRFAQSARLQAGAAP 353 Query: 365 ALTQHIVADFMAEGHFARHIQRMRRLYAQRRTMAIAGLEGVLHSHVRIDSPPGGMHLLLR 424 LTQ I++ FMAEGHF RHIQRMR+LYA+RR +AGL L +RI+ PGGMHL+ R Sbjct: 354 GLTQAILSAFMAEGHFGRHIQRMRKLYAERRAATVAGLSAALGQRLRIEPQPGGMHLVAR 413 Query: 425 LQGRRSDRLLADKMRQHGMFSRALSECLLAPRPGVAPMIMLSFTNIDSRRRAAELARRIL 484 L ++D LA +M + GM++ ALS AP+ A ++LSFTNI ++ +A EL RIL Sbjct: 414 LDDGQNDVALAGRMEEQGMYAGALSRWYAAPQRQSA--LLLSFTNIATQAQAHELGLRIL 471 Query: 485 PLL 487 L+ Sbjct: 472 KLM 474