BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2220.p         (164 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EFV87704.1| AhpD family Alkylhydroperoxidase like protein [Ac...   174   4e-42
ref|YP_002909464.1| type IV conjugative transfer system protein ...   170   8e-41
ref|ZP_06689015.1| type IV conjugative transfer system protein T...   169   2e-40
gb|EGP48001.1| alkylhydroperoxidase like protein, AhpD family [A...   167   6e-40
ref|YP_004350714.1| putative cytoplasmic protein [Burkholderia g...   163   7e-39

>gb|EFV87704.1| AhpD family Alkylhydroperoxidase like protein [Achromobacter
           xylosoxidans C54]
          Length = 155

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 88/149 (59%), Positives = 103/149 (69%)

Query: 15  MSARIDLYKNATAAYDGLLAVNRHLKQCSLPADLVELVFLRVSLINGCAYCIDKHSRDLL 74
           MS RID  + A   Y    AV  +L+QC LP +LV LV+LRVS INGCAYCID HSRDLL
Sbjct: 1   MSQRIDYAQAAPEGYKAFGAVYAYLRQCGLPEELVNLVYLRVSQINGCAYCIDMHSRDLL 60

Query: 75  SSGMPVDKLVLVPVWQEAGPLFTPREQAALAWAEVVTRIDQTAAPDADYQAVIQHFTAQE 134
             G+ VDKLVLVPVW+EAG LF+ REQAALAWAE VTR+  +  PD DY+A    F  +E
Sbjct: 61  KQGVAVDKLVLVPVWREAGALFSGREQAALAWAECVTRVADSGVPDDDYEAASAQFNDKE 120

Query: 135 YSELTIAIALMNAMNRLAIPGRMQPQAAR 163
            ++LT AI LMNA NRL +  R  P A R
Sbjct: 121 LADLTYAIGLMNAFNRLGVTFRNTPAAVR 149


>ref|YP_002909464.1| type IV conjugative transfer system protein TraE [Burkholderia
           glumae BGR1]
 gb|ACR32229.1| type IV conjugative transfer system protein TraE [Burkholderia
           glumae BGR1]
          Length = 153

 Score =  170 bits (430), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 89/150 (59%), Positives = 107/150 (71%)

Query: 15  MSARIDLYKNATAAYDGLLAVNRHLKQCSLPADLVELVFLRVSLINGCAYCIDKHSRDLL 74
           MS RI   + A A Y  L+ V+ ++ QC L A LV+LV+LRVSLINGCAYCID H+RDL 
Sbjct: 1   MSERIHYQQAAPAGYKALVGVHAYVSQCGLDATLVDLVYLRVSLINGCAYCIDLHTRDLR 60

Query: 75  SSGMPVDKLVLVPVWQEAGPLFTPREQAALAWAEVVTRIDQTAAPDADYQAVIQHFTAQE 134
             G+ V+K+VLVPVW EA  LF+ REQAALAWAE VTR+ QT  PD+DYQA    F  +E
Sbjct: 61  KHGVAVEKIVLVPVWHEAKSLFSAREQAALAWAESVTRVAQTGVPDSDYQAAASVFGEKE 120

Query: 135 YSELTIAIALMNAMNRLAIPGRMQPQAARA 164
            ++LTIAI LMN+ NRLAI  R  P AA A
Sbjct: 121 LADLTIAIGLMNSFNRLAISFRNVPAAALA 150


>ref|ZP_06689015.1| type IV conjugative transfer system protein TraE [Achromobacter
           piechaudii ATCC 43553]
 gb|EFF74070.1| type IV conjugative transfer system protein TraE [Achromobacter
           piechaudii ATCC 43553]
          Length = 164

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/145 (56%), Positives = 100/145 (68%)

Query: 15  MSARIDLYKNATAAYDGLLAVNRHLKQCSLPADLVELVFLRVSLINGCAYCIDKHSRDLL 74
           MSAR+D    +   Y     V  +L++C LP  L++LVFLRVS INGCAYCID HSRDL+
Sbjct: 1   MSARLDYANASPEGYKAFGGVYVYLQRCGLPKTLIDLVFLRVSQINGCAYCIDMHSRDLI 60

Query: 75  SSGMPVDKLVLVPVWQEAGPLFTPREQAALAWAEVVTRIDQTAAPDADYQAVIQHFTAQE 134
             G+ VDKLVLVPVW EAG +F+ RE+AALAWAE VTR+ QT  PD DY A    F+ +E
Sbjct: 61  KQGVAVDKLVLVPVWHEAGEVFSRRERAALAWAESVTRVAQTGVPDDDYAAAAAEFSDKE 120

Query: 135 YSELTIAIALMNAMNRLAIPGRMQP 159
            ++LT AI LMNA NRL +  R  P
Sbjct: 121 LADLTYAIGLMNAFNRLGVSFRATP 145


>gb|EGP48001.1| alkylhydroperoxidase like protein, AhpD family [Achromobacter
           xylosoxidans AXX-A]
          Length = 153

 Score =  167 bits (422), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 90/150 (60%), Positives = 103/150 (68%)

Query: 15  MSARIDLYKNATAAYDGLLAVNRHLKQCSLPADLVELVFLRVSLINGCAYCIDKHSRDLL 74
           MS RID  K A   Y     V  +L+QC LP  LV LV+LRVS INGCAYCID HSRDLL
Sbjct: 1   MSHRIDYAKAAPEGYKAFGGVYTYLRQCGLPETLVNLVYLRVSQINGCAYCIDMHSRDLL 60

Query: 75  SSGMPVDKLVLVPVWQEAGPLFTPREQAALAWAEVVTRIDQTAAPDADYQAVIQHFTAQE 134
             G+ VDKLVLVPVW+E G LF+ REQAALAWAE VTR+ +T  PDADY A    F+ +E
Sbjct: 61  KQGVAVDKLVLVPVWREGGALFSAREQAALAWAECVTRVAETGVPDADYAAAAAEFSDKE 120

Query: 135 YSELTIAIALMNAMNRLAIPGRMQPQAARA 164
            ++LT AI LMNA NRL +  R  P A RA
Sbjct: 121 LADLTYAIGLMNAFNRLGVTFRNTPAAVRA 150


>ref|YP_004350714.1| putative cytoplasmic protein [Burkholderia gladioli BSR3]
 gb|AEA65202.1| putative cytoplasmic protein [Burkholderia gladioli BSR3]
          Length = 153

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 85/147 (57%), Positives = 102/147 (69%)

Query: 15  MSARIDLYKNATAAYDGLLAVNRHLKQCSLPADLVELVFLRVSLINGCAYCIDKHSRDLL 74
           MS R+D  K + A    L  V  H+ QC L   LV+LV+LRVS INGCAYCID H+RDLL
Sbjct: 1   MSQRLDYRKASAAGTKALGGVYAHILQCGLEERLVDLVYLRVSQINGCAYCIDMHTRDLL 60

Query: 75  SSGMPVDKLVLVPVWQEAGPLFTPREQAALAWAEVVTRIDQTAAPDADYQAVIQHFTAQE 134
             G  ++++VLVPVWQEAG LF  RE+AALAWAE VTR+ +T  PD+ ++A    F  QE
Sbjct: 61  KKGDKLERVVLVPVWQEAGALFDERERAALAWAESVTRVSETGVPDSAFEAARAVFGEQE 120

Query: 135 YSELTIAIALMNAMNRLAIPGRMQPQA 161
            S+LTIAI LMNA NRLAI  R  PQA
Sbjct: 121 LSDLTIAIGLMNAYNRLAISFRAVPQA 147