BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2219.p (281 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775237.1| transcription regulator protein [Herbaspiril... 449 e-124 ref|ZP_07774905.1| transcriptional regulator, LysR family [Pseud... 283 2e-74 ref|YP_002872040.1| putative LysR family regulatory protein [Pse... 278 6e-73 ref|ZP_03269200.1| transcriptional regulator, LysR family [Burkh... 251 8e-65 emb|CAQ36913.1| hypothetical protein RSMK03137 [Ralstonia solana... 242 5e-62 >ref|YP_003775237.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63329.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 281 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 261/281 (92%), Positives = 270/281 (96%) Query: 1 MDKPLDLDAVQAFVLAADLQSFTRAAEALDSTQSAISFKLKKLEQRLGRRLLERTPRQVR 60 M+KPLDLDAVQAFVLAADL SFTRAAEAL+STQSA+S KLKKLEQRLGRRLLERTPRQVR Sbjct: 1 MEKPLDLDAVQAFVLAADLHSFTRAAEALESTQSAVSLKLKKLEQRLGRRLLERTPRQVR 60 Query: 61 LSAEGQQFLPAARSLLAAHERALEQLDQGPVRFSVGISDHVAGATLPRALAQVHALDPGV 120 LSAEGQQFLPAAR LLAAHERALEQLDQGPVRFSVGISDHVAGA+LPRALAQVHALDPGV Sbjct: 61 LSAEGQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGV 120 Query: 121 VVEVRVGSSHDLMPAYERGELDAVIVRREPQDKGGKLVMEERIGWFAHPDAQCWAGPALR 180 VVEVRV SSHDLMP YERGELDAVIVRREPQD+GGKLVMEERIGWFAHPDAQCWAG ALR Sbjct: 121 VVEVRVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAGGALR 180 Query: 181 VATFSSACRIRELSLRRLDAAGIPWVEVFVGGGILAVGAAVSAGLAVSALLHRSAPPGAV 240 VATFS ACRIRELSLRRLDAAGI WVEVFVGGGILAVGAAVSAGLAVSALL+RSAPPGAV Sbjct: 181 VATFSQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSALLYRSAPPGAV 240 Query: 241 DVGERLGLPKLPLAQVRLHARLKEPRLQSALRTLVAALKSA 281 DVGERLGLP+LPLAQVRLH+RLKE RLQ ALR LVAALK+A Sbjct: 241 DVGERLGLPRLPLAQVRLHSRLKEARLQGALRGLVAALKAA 281 >ref|ZP_07774905.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gb|EFQ63853.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 290 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 161/278 (57%), Positives = 204/278 (73%), Gaps = 1/278 (0%) Query: 3 KPLDLDAVQAFVLAADLQSFTRAAEALDSTQSAISFKLKKLEQRLGRRLLERTPRQVRLS 62 KPLD+D VQAFVL AD SFTRAAEALD++Q+AIS KLK+LE+RLG RLLERTPRQVRLS Sbjct: 6 KPLDIDTVQAFVLVADFASFTRAAEALDTSQAAISLKLKRLEERLGYRLLERTPRQVRLS 65 Query: 63 AEGQQFLPAARSLLAAHERALEQL-DQGPVRFSVGISDHVAGATLPRALAQVHALDPGVV 121 G+ F+ AAR+LL AHERAL + P R +GISDHVAG LP L+++ A DP V+ Sbjct: 66 PRGELFIVAARALLNAHERALGDMGSTAPRRLVIGISDHVAGPDLPIWLSRMAAYDPLVI 125 Query: 122 VEVRVGSSHDLMPAYERGELDAVIVRREPQDKGGKLVMEERIGWFAHPDAQCWAGPALRV 181 +EVR+ SS DLM A++R ELDAVIVR E + G+++ ER GWFA P Q G LR+ Sbjct: 126 LEVRIASSRDLMAAFDRNELDAVIVRNEGDRQDGEVLAVERFGWFAAPAWQHSPGQPLRM 185 Query: 182 ATFSSACRIRELSLRRLDAAGIPWVEVFVGGGILAVGAAVSAGLAVSALLHRSAPPGAVD 241 AT ++ C +R L+ R LD A I W+EVFVGGG++AVGAAVSAGL V+AL +R AP GAVD Sbjct: 186 ATMAAPCGVRHLATRALDTACIDWIEVFVGGGVMAVGAAVSAGLGVAALAYRVAPAGAVD 245 Query: 242 VGERLGLPKLPLAQVRLHARLKEPRLQSALRTLVAALK 279 V E+ LP LP+++V L++R+ + R + LR L A + Sbjct: 246 VSEQYDLPPLPMSEVVLYSRINDGRSKDTLRALSATFR 283 >ref|YP_002872040.1| putative LysR family regulatory protein [Pseudomonas fluorescens SBW25] emb|CAY48669.1| putative LysR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 288 Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 160/280 (57%), Positives = 205/280 (73%), Gaps = 1/280 (0%) Query: 3 KPLDLDAVQAFVLAADLQSFTRAAEALDSTQSAISFKLKKLEQRLGRRLLERTPRQVRLS 62 KPLD+D VQAFV AD SFTRAAEALD++Q+AIS KLK+LE+RLG RLLERTPR VRLS Sbjct: 6 KPLDIDTVQAFVRVADFASFTRAAEALDTSQAAISLKLKRLEERLGYRLLERTPRHVRLS 65 Query: 63 AEGQQFLPAARSLLAAHERALEQLDQGPVR-FSVGISDHVAGATLPRALAQVHALDPGVV 121 +G+ F+ AAR+LL AHERAL + +R +GISDHVAG LP L+++ A DP V+ Sbjct: 66 PQGEHFIVAARALLNAHERALGDMASHALRRLVIGISDHVAGPDLPTWLSRLAAYDPLVI 125 Query: 122 VEVRVGSSHDLMPAYERGELDAVIVRREPQDKGGKLVMEERIGWFAHPDAQCWAGPALRV 181 +EVR+ SS +L+ A++R ELDAVIVR E + G+++ ER GWFA P Q G LR+ Sbjct: 126 LEVRIASSRELVAAFDRNELDAVIVRNEGDRQDGEVLAVERFGWFAAPTWQHSPGTPLRM 185 Query: 182 ATFSSACRIRELSLRRLDAAGIPWVEVFVGGGILAVGAAVSAGLAVSALLHRSAPPGAVD 241 AT ++ C +R L+ R LDAA I W EVFVGGG++AVGAAVSAGL V+AL HR AP GAVD Sbjct: 186 ATMAAPCGVRHLATRALDAARIDWTEVFVGGGVMAVGAAVSAGLGVAALAHRVAPSGAVD 245 Query: 242 VGERLGLPKLPLAQVRLHARLKEPRLQSALRTLVAALKSA 281 V E+ GLP LP+++V L++R+ + R + LR L A + A Sbjct: 246 VSEQYGLPTLPVSEVVLYSRISDGRSKETLRALSATFRGA 285 >ref|ZP_03269200.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gb|EDZ99225.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 285 Score = 251 bits (641), Expect = 8e-65, Method: Composition-based stats. Identities = 154/275 (56%), Positives = 201/275 (73%) Query: 5 LDLDAVQAFVLAADLQSFTRAAEALDSTQSAISFKLKKLEQRLGRRLLERTPRQVRLSAE 64 LD+DAV+AF L ADLQSFTRAAEA+D++Q+AIS KLK+LE+RLG RL+ERTPR VRLSA Sbjct: 4 LDVDAVRAFTLVADLQSFTRAAEAMDTSQAAISVKLKRLEERLGYRLIERTPRLVRLSAR 63 Query: 65 GQQFLPAARSLLAAHERALEQLDQGPVRFSVGISDHVAGATLPRALAQVHALDPGVVVEV 124 G FL AAR +AAHERAL +L RF +GIS+H+AG LP LA++H DP +V+EV Sbjct: 64 GAAFLAAAREFVAAHERALGELSDTTRRFVLGISEHIAGPELPILLARLHTYDPSLVIEV 123 Query: 125 RVGSSHDLMPAYERGELDAVIVRREPQDKGGKLVMEERIGWFAHPDAQCWAGPALRVATF 184 ++ SS L+ A+E G+LDAVI+RRE + G ++ E +GWFA P G LR+A+ Sbjct: 124 QIESSRRLLDAFEHGKLDAVILRREDDRRNGDVLALEPVGWFAAPGFVHHEGAPLRLASL 183 Query: 185 SSACRIRELSLRRLDAAGIPWVEVFVGGGILAVGAAVSAGLAVSALLHRSAPPGAVDVGE 244 S++C +R L+ R+LDAAGI W +VF+GGG AV AAVSAGLAV A HR AP G ++VG Sbjct: 184 SASCGLRTLATRKLDAAGIAWTDVFIGGGTAAVTAAVSAGLAVGAFAHRVAPVGVIEVGA 243 Query: 245 RLGLPKLPLAQVRLHARLKEPRLQSALRTLVAALK 279 LGLP LP +++ LH+ L + R + ALRT+ AA + Sbjct: 244 LLGLPALPPSEIVLHSSLSDTRSRGALRTIAAAFR 278 >emb|CAQ36913.1| hypothetical protein RSMK03137 [Ralstonia solanacearum MolK2] Length = 338 Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 147/277 (53%), Positives = 196/277 (70%), Gaps = 1/277 (0%) Query: 5 LDLDAVQAFVLAADLQSFTRAAEALDSTQSAISFKLKKLEQRLGRRLLERTPRQVRLSAE 64 LD++AVQAFVL ADL+SFTRAAEA+D+TQSA+S K+K+LE RLGRRLLERTPR VRLS + Sbjct: 56 LDIEAVQAFVLTADLKSFTRAAEAMDTTQSAVSLKIKRLEDRLGRRLLERTPRVVRLSQD 115 Query: 65 GQQFLPAARSLLAAHERALEQLDQGPVRFSVGISDHVAGATLPRALAQVHALDPGVVVEV 124 G FL AAR L+AAH+ AL P R SVGIS H+ GA LP L Q+ +P ++E+ Sbjct: 116 GDAFLAAARELIAAHQGALGAFGTKPRRLSVGISHHIVGAELPWLLRQMVRAEPATLLEI 175 Query: 125 RVGSSHDLMPAYERGELD-AVIVRREPQDKGGKLVMEERIGWFAHPDAQCWAGPALRVAT 183 RV SS + + A++R ELD AV +R + + G+ +++E GW A PD G LR+AT Sbjct: 176 RVASSRETLDAFDRDELDAAVTLRHDTRRSDGETILDEAFGWMAAPDFTHHPGEPLRLAT 235 Query: 184 FSSACRIRELSLRRLDAAGIPWVEVFVGGGILAVGAAVSAGLAVSALLHRSAPPGAVDVG 243 ++ CR+RE+++ L+ AG+PW EVFVGGG+ +GAAV+AGLAV+AL R+APPG VD+G Sbjct: 236 QAAPCRVREMAVTALEQAGVPWREVFVGGGVGTIGAAVAAGLAVAALSRRAAPPGTVDIG 295 Query: 244 ERLGLPKLPLAQVRLHARLKEPRLQSALRTLVAALKS 280 RLGLP LP + LH ++ LRTL A +++ Sbjct: 296 PRLGLPPLPSRGMILHTHRRDREATHTLRTLAATIRA 332