BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2214.p         (152 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775230.1| translation initiation inhibitor protein [He...   275   2e-72
ref|YP_001099106.1| hypothetical protein HEAR0786 [Herminiimonas...   241   3e-62
ref|YP_001352391.1| L-PSP family endoribonuclease [Janthinobacte...   239   1e-61
ref|YP_004233852.1| endoribonuclease L-PSP [Acidovorax avenae su...   237   5e-61
ref|YP_969711.1| endoribonuclease L-PSP [Acidovorax citrulli AAC...   235   2e-60

>ref|YP_003775230.1| translation initiation inhibitor protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ63322.1| translation initiation inhibitor (yjgF family) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 152

 Score =  275 bits (702), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 151/152 (99%), Positives = 152/152 (100%)

Query: 1   MSVYEKLKALNIELPAVATPAAAYVMYAQTGNTVFLSGHLAKKDGKVWVGQLGRDIGTDD 60
           MSVYEKLKALNIELPAVATPAAAYVMYAQTGNTVFLSGHLAKKDGKVWVGQLGRDIGTDD
Sbjct: 1   MSVYEKLKALNIELPAVATPAAAYVMYAQTGNTVFLSGHLAKKDGKVWVGQLGRDIGTDD 60

Query: 61  AKLAARAVAVDLIATLQAACGGDLTRVKRIVKLMSLVNSTGEFTEHHLVTNGASELIGEV 120
           AKLAARAVAVDLIATLQAACGGDLTRVKRIVKLMSLVNSTGEFTEHHLVTNGASELIGEV
Sbjct: 61  AKLAARAVAVDLIATLQAACGGDLTRVKRIVKLMSLVNSTGEFTEHHLVTNGASELIGEV 120

Query: 121 FGDAGKHARSAFGVAQLPMGACVEIEMIAEIA 152
           FG+AGKHARSAFGVAQLPMGACVEIEMIAEIA
Sbjct: 121 FGEAGKHARSAFGVAQLPMGACVEIEMIAEIA 152


>ref|YP_001099106.1| hypothetical protein HEAR0786 [Herminiimonas arsenicoxydans]
 emb|CAL60979.1| Endoribonuclease L-PSP [Herminiimonas arsenicoxydans]
          Length = 152

 Score =  241 bits (615), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 123/151 (81%), Positives = 139/151 (92%)

Query: 1   MSVYEKLKALNIELPAVATPAAAYVMYAQTGNTVFLSGHLAKKDGKVWVGQLGRDIGTDD 60
           MS Y+KLKALNIELPAVATPAAAYVMY Q+GNTVFLSGH+AKKDGK WVGQLG++I T++
Sbjct: 1   MSFYDKLKALNIELPAVATPAAAYVMYVQSGNTVFLSGHIAKKDGKPWVGQLGKNISTEE 60

Query: 61  AKLAARAVAVDLIATLQAACGGDLTRVKRIVKLMSLVNSTGEFTEHHLVTNGASELIGEV 120
            KLAAR VA+DLIATLQAACGGDL RV+RIVK+MSLVNSTG++TE HLVTNGASEL GE+
Sbjct: 61  GKLAARGVAIDLIATLQAACGGDLNRVQRIVKVMSLVNSTGDYTEQHLVTNGASELFGEI 120

Query: 121 FGDAGKHARSAFGVAQLPMGACVEIEMIAEI 151
           FG  G HARSAFGVAQ+P+GACVEIE+IAEI
Sbjct: 121 FGAQGVHARSAFGVAQIPLGACVEIELIAEI 151


>ref|YP_001352391.1| L-PSP family endoribonuclease [Janthinobacterium sp. Marseille]
 gb|ABR90479.1| endoribonuclease, L-PSP family [Janthinobacterium sp. Marseille]
          Length = 152

 Score =  239 bits (610), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 124/151 (82%), Positives = 140/151 (92%)

Query: 1   MSVYEKLKALNIELPAVATPAAAYVMYAQTGNTVFLSGHLAKKDGKVWVGQLGRDIGTDD 60
           MS Y+KLKALNIELPAVATPAAAYVMY Q+GNTVFLSGH+AKKDGK WVGQLG+++ T++
Sbjct: 1   MSFYDKLKALNIELPAVATPAAAYVMYVQSGNTVFLSGHIAKKDGKPWVGQLGKNMTTEE 60

Query: 61  AKLAARAVAVDLIATLQAACGGDLTRVKRIVKLMSLVNSTGEFTEHHLVTNGASELIGEV 120
           AKLAAR VAVDL+ATLQAACGGDL RVKRIVK+MSLVNSTG++TE HLVTNGASEL GEV
Sbjct: 61  AKLAARGVAVDLMATLQAACGGDLNRVKRIVKVMSLVNSTGDYTEQHLVTNGASELFGEV 120

Query: 121 FGDAGKHARSAFGVAQLPMGACVEIEMIAEI 151
           FG  G HARSAFGVAQ+P+GACVEIE+IAE+
Sbjct: 121 FGAQGVHARSAFGVAQIPLGACVEIELIAEV 151


>ref|YP_004233852.1| endoribonuclease L-PSP [Acidovorax avenae subsp. avenae ATCC 19860]
 gb|ADX45285.1| Endoribonuclease L-PSP [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 152

 Score =  237 bits (604), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 121/152 (79%), Positives = 136/152 (89%)

Query: 1   MSVYEKLKALNIELPAVATPAAAYVMYAQTGNTVFLSGHLAKKDGKVWVGQLGRDIGTDD 60
           MS+Y+KL ALNI LP VATPAAAYV Y QTGN VFLSGH+A+KDGK WVGQLGRD+ T+D
Sbjct: 1   MSIYDKLSALNITLPPVATPAAAYVPYVQTGNLVFLSGHIARKDGKPWVGQLGRDVSTED 60

Query: 61  AKLAARAVAVDLIATLQAACGGDLTRVKRIVKLMSLVNSTGEFTEHHLVTNGASELIGEV 120
            K AARAVA+DL+ TL AA GGDL RV+RIVK+MSLVNSTG+FTE HLVTNGASEL+GEV
Sbjct: 61  GKAAARAVAIDLLGTLHAATGGDLNRVQRIVKVMSLVNSTGDFTEQHLVTNGASELLGEV 120

Query: 121 FGDAGKHARSAFGVAQLPMGACVEIEMIAEIA 152
           FGD GKHARSAFGVAQ+PMGACVEIE+IAE+A
Sbjct: 121 FGDKGKHARSAFGVAQIPMGACVEIELIAELA 152


>ref|YP_969711.1| endoribonuclease L-PSP [Acidovorax citrulli AAC00-1]
 gb|ABM31937.1| Endoribonuclease L-PSP [Acidovorax citrulli AAC00-1]
          Length = 152

 Score =  235 bits (599), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 121/152 (79%), Positives = 135/152 (88%)

Query: 1   MSVYEKLKALNIELPAVATPAAAYVMYAQTGNTVFLSGHLAKKDGKVWVGQLGRDIGTDD 60
           MS+Y+KL ALNI LP VATPAAAYV Y QTGN VFLSGH+A+KDGK WVGQ GRDI T+D
Sbjct: 1   MSIYDKLAALNITLPPVATPAAAYVPYVQTGNLVFLSGHIARKDGKPWVGQFGRDIATED 60

Query: 61  AKLAARAVAVDLIATLQAACGGDLTRVKRIVKLMSLVNSTGEFTEHHLVTNGASELIGEV 120
            K AARAVA+DL+ TL AA GGDL RV+RIVK+MSLVNSTG+FTE HLVTNGASEL+GEV
Sbjct: 61  GKAAARAVAIDLMGTLHAATGGDLNRVQRIVKVMSLVNSTGDFTEQHLVTNGASELLGEV 120

Query: 121 FGDAGKHARSAFGVAQLPMGACVEIEMIAEIA 152
           FGD GKHARSAFGVAQ+PMGACVEIE+IAE+A
Sbjct: 121 FGDKGKHARSAFGVAQIPMGACVEIELIAELA 152