BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2213.p (307 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775229.1| drug/metabolite transporter (DMT) superfamil... 424 e-116 ref|YP_001099105.1| putative permease [Herminiimonas arsenicoxyd... 345 7e-93 ref|YP_001352390.1| transporter of the DMT superfamily [Janthino... 341 8e-92 ref|YP_004753190.1| putative permease [Collimonas fungivorans Te... 314 1e-83 ref|YP_002980889.1| hypothetical protein Rpic12D_0917 [Ralstonia... 279 5e-73 >ref|YP_003775229.1| drug/metabolite transporter (DMT) superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ63321.1| permease of the drug/metabolite transporter (DMT) superfamily protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 276/307 (89%), Positives = 290/307 (94%), Gaps = 1/307 (0%) Query: 1 MQASSKTSHPATAPGAGTARHESRGMWLGLIGVAIFSLTLPFTRIAVAELNPAFVAFGRA 60 MQASSK ATA G AR+ESRGMWLGLIGVA+FSLTLPFTRIAVAEL+PAFVAFGRA Sbjct: 1 MQASSKPVVTATAEG-NVARNESRGMWLGLIGVAVFSLTLPFTRIAVAELSPAFVAFGRA 59 Query: 61 VVAGVCALALLAWIKAPRPTRQQLRGLVITALGVVVGFPLFSSIAMRYVPAAHGAVVVGL 120 VVAG+C+LALLAW++APRP QQLRGLVITALGVVVGFPLFSSIAMRYVPAAHGAVVVGL Sbjct: 60 VVAGLCSLALLAWMRAPRPNAQQLRGLVITALGVVVGFPLFSSIAMRYVPAAHGAVVVGL 119 Query: 121 LPLATALFGALRFGERPSKGFWLAALAGSGIVIAFALREGGGSFHLADFALFAAVVTAAM 180 LPLATALFGALRFGERPS GFWL+ALAGS IVIAFALR GGGSFH ADFALFAAV+TAAM Sbjct: 120 LPLATALFGALRFGERPSAGFWLSALAGSAIVIAFALRAGGGSFHAADFALFAAVITAAM 179 Query: 181 GYAEGGRLAQTMGGQNVIAWALVVALPVMLPVSVWLGWQYGVTASSPAWLAFAYVSLFSM 240 GYAEGGRLAQ+MGGQNVIAWALVVALPVMLPVS+WLGWQ G++AS+PAWLAF YVSLFSM Sbjct: 180 GYAEGGRLAQSMGGQNVIAWALVVALPVMLPVSLWLGWQDGLSASAPAWLAFGYVSLFSM 239 Query: 241 FIGFFFWYKGLALGGIARVGQVQLLQPFMSLLGAAVIAHEALDASNMLFALAVIVVVAIG 300 FIGFFFWYKGLALGGIARVGQVQLLQPFMSLLGAAVIA EALDASNMLFALAVIVVVAIG Sbjct: 240 FIGFFFWYKGLALGGIARVGQVQLLQPFMSLLGAAVIAGEALDASNMLFALAVIVVVAIG 299 Query: 301 RRMAVRR 307 RRMAVRR Sbjct: 300 RRMAVRR 306 >ref|YP_001099105.1| putative permease [Herminiimonas arsenicoxydans] emb|CAL60978.1| putative permease of the drug/metabolite transporter (DMT) [Herminiimonas arsenicoxydans] Length = 313 Score = 345 bits (884), Expect = 7e-93, Method: Composition-based stats. Identities = 196/286 (68%), Positives = 241/286 (84%) Query: 22 ESRGMWLGLIGVAIFSLTLPFTRIAVAELNPAFVAFGRAVVAGVCALALLAWIKAPRPTR 81 E++GMWLG IG+AIFSLTLPFTR+AVAELNP +A GRAVVA C++ LL W APRPTR Sbjct: 26 ETKGMWLGAIGIAIFSLTLPFTRMAVAELNPVLMALGRAVVAACCSVLLLWWTNAPRPTR 85 Query: 82 QQLRGLVITALGVVVGFPLFSSIAMRYVPAAHGAVVVGLLPLATALFGALRFGERPSKGF 141 Q++ L+I A GVVVGFP+FSSIAM ++ A+HGA+++G+LPLATALFGALRFGERPS GF Sbjct: 86 SQVKSLLIIASGVVVGFPVFSSIAMSHISASHGAIILGILPLATALFGALRFGERPSLGF 145 Query: 142 WLAALAGSGIVIAFALREGGGSFHLADFALFAAVVTAAMGYAEGGRLAQTMGGQNVIAWA 201 W+ AL GS +V AFA+ EGGGSF D A+ AV+ AAMGYAEGGRL+++MGGQ VI+WA Sbjct: 146 WITALIGSALVAAFAVDEGGGSFQWGDLAMLIAVIAAAMGYAEGGRLSESMGGQQVISWA 205 Query: 202 LVVALPVMLPVSVWLGWQYGVTASSPAWLAFAYVSLFSMFIGFFFWYKGLALGGIARVGQ 261 LV+++P++LPV++WL YGV AS AW+ FAYVSLFSMFIGFFFWYKGLALGGI+RVGQ Sbjct: 206 LVLSMPIVLPVTIWLALHYGVQASVSAWVGFAYVSLFSMFIGFFFWYKGLALGGISRVGQ 265 Query: 262 VQLLQPFMSLLGAAVIAHEALDASNMLFALAVIVVVAIGRRMAVRR 307 VQL+QPF++LLGAAVI E L+ LFALA+IVVVA+GR+M ++R Sbjct: 266 VQLIQPFLTLLGAAVILGELLEWRTFLFALAIIVVVAMGRKMPIKR 311 >ref|YP_001352390.1| transporter of the DMT superfamily [Janthinobacterium sp. Marseille] gb|ABR91094.1| transporter of the DMT superfamily [Janthinobacterium sp. Marseille] Length = 297 Score = 341 bits (875), Expect = 8e-92, Method: Composition-based stats. Identities = 205/287 (71%), Positives = 246/287 (85%) Query: 21 HESRGMWLGLIGVAIFSLTLPFTRIAVAELNPAFVAFGRAVVAGVCALALLAWIKAPRPT 80 E++GM LG IGVA+FSLTLPFTR+AVAEL+P FVA GRAVVA C+ LL W A P Sbjct: 9 QETKGMLLGAIGVALFSLTLPFTRMAVAELDPVFVALGRAVVAAACSAVLLWWTGAVLPN 68 Query: 81 RQQLRGLVITALGVVVGFPLFSSIAMRYVPAAHGAVVVGLLPLATALFGALRFGERPSKG 140 R QL+ L ITALGVVVGFP+FSSIAM YVPA+HGA+++G+LPLATALFGALRFGERPS G Sbjct: 69 RTQLKSLFITALGVVVGFPVFSSIAMHYVPASHGAIILGILPLATALFGALRFGERPSPG 128 Query: 141 FWLAALAGSGIVIAFALREGGGSFHLADFALFAAVVTAAMGYAEGGRLAQTMGGQNVIAW 200 FW+AA+ GS +V+ FAL++GGG H+AD ALF AV+ AAMGYAEGGRL+QT+GGQ VI+W Sbjct: 129 FWIAAVIGSALVVGFALQQGGGELHIADLALFIAVMAAAMGYAEGGRLSQTLGGQQVISW 188 Query: 201 ALVVALPVMLPVSVWLGWQYGVTASSPAWLAFAYVSLFSMFIGFFFWYKGLALGGIARVG 260 ALV+++PV+LPV+VWLGW++GV+AS AW FAYVSLFSMFIGFFFWYKGLALGGIARVG Sbjct: 189 ALVLSMPVVLPVTVWLGWRHGVSASPAAWAGFAYVSLFSMFIGFFFWYKGLALGGIARVG 248 Query: 261 QVQLLQPFMSLLGAAVIAHEALDASNMLFALAVIVVVAIGRRMAVRR 307 QVQL+QPF++LLGAAVI E L+ LFALA+I VVAIGR+M+++R Sbjct: 249 QVQLIQPFLTLLGAAVILGEVLEWRTFLFALAIIAVVAIGRKMSIKR 295 >ref|YP_004753190.1| putative permease [Collimonas fungivorans Ter331] gb|AEK62367.1| putative permease (drug/metabolite transporter); putative membrane protein [Collimonas fungivorans Ter331] Length = 316 Score = 314 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 215/286 (75%), Positives = 249/286 (87%) Query: 22 ESRGMWLGLIGVAIFSLTLPFTRIAVAELNPAFVAFGRAVVAGVCALALLAWIKAPRPTR 81 ES+GMWLGL+GVA+FSLTLPFTR+AVAELNP FVA GRAVVA +C++ LL +KA PT Sbjct: 28 ESKGMWLGLVGVAVFSLTLPFTRMAVAELNPVFVALGRAVVAALCSMLLLWKLKAKLPTA 87 Query: 82 QQLRGLVITALGVVVGFPLFSSIAMRYVPAAHGAVVVGLLPLATALFGALRFGERPSKGF 141 Q + L +TALGVVVGFP+FSS+AMRYVPAAHGA+V+G+LPLATALFGALRFGERPS GF Sbjct: 88 AQWKPLALTALGVVVGFPVFSSVAMRYVPAAHGAIVLGVLPLATALFGALRFGERPSAGF 147 Query: 142 WLAALAGSGIVIAFALREGGGSFHLADFALFAAVVTAAMGYAEGGRLAQTMGGQNVIAWA 201 W+AA+ GS IV+ FAL +GGG AD AL AAV+ AAMGYAEGGRL+QTMGGQ VIAWA Sbjct: 148 WIAAVIGSLIVVVFALSQGGGGLQAADLALLAAVLAAAMGYAEGGRLSQTMGGQQVIAWA 207 Query: 202 LVVALPVMLPVSVWLGWQYGVTASSPAWLAFAYVSLFSMFIGFFFWYKGLALGGIARVGQ 261 L+++LPV+LPV+VWLGW YGV+AS AWL FAYVS+FSMFIGF FWYKGLALGGIARVGQ Sbjct: 208 LLLSLPVLLPVTVWLGWHYGVSASPRAWLGFAYVSVFSMFIGFLFWYKGLALGGIARVGQ 267 Query: 262 VQLLQPFMSLLGAAVIAHEALDASNMLFALAVIVVVAIGRRMAVRR 307 VQLLQPF++LLGAA++ E L A NMLFALAV+VVVA GR+MAVRR Sbjct: 268 VQLLQPFLTLLGAALLLGETLQAGNMLFALAVLVVVAFGRKMAVRR 313 >ref|YP_002980889.1| hypothetical protein Rpic12D_0917 [Ralstonia pickettii 12D] gb|ACS62217.1| protein of unknown function DUF6 transmembrane [Ralstonia pickettii 12D] Length = 312 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 187/308 (60%), Positives = 224/308 (72%), Gaps = 11/308 (3%) Query: 11 ATAPGAGTARHESRGMWLGLIGVAIFSLTLPFTRIAVAELNPAFVAFGRAVVAGVCALAL 70 A P T E RG+ LGLIGVAIFS TLPFTR+AVAEL+ FVA RAV+A V ALA+ Sbjct: 5 AALPMQHTDHAERRGLLLGLIGVAIFSQTLPFTRMAVAELDATFVALARAVLASVLALAM 64 Query: 71 LAWIKA----PRPTRQQLRGLVITALGVVVGFPLFSSIAMRYVPAAHGAVVVGLLPLATA 126 LA A RP Q L +TA+GVVVGFPLFSS+AMR VPAAHGA++ GLLPLATA Sbjct: 65 LAATGAFAAGKRPRGHQWWQLAVTAMGVVVGFPLFSSLAMRDVPAAHGAIITGLLPLATA 124 Query: 127 LFGALRFGERPSKGFWLAALAGSGIVIAFALREGGGSFHLADFALFAAVVTAAMGYAEGG 186 +F A ERPS GFWL ALAGS +V++FAL +G GS H AD+ LFAA+VT A+GYA GG Sbjct: 125 IFAAWFGRERPSAGFWLCALAGSVLVVSFALLQGAGSLHRADWLLFAAMVTGALGYATGG 184 Query: 187 RLAQTMGGQNVIAWALVVALPVMLPVSVWLGW-------QYGVTASSPAWLAFAYVSLFS 239 +LA+ +GG IAWAL+++LPV+LP+ L W + ASS AW+ AYVS FS Sbjct: 185 KLARELGGTQTIAWALIISLPVLLPLVSALAWLPSTHQAEALAHASSRAWMGLAYVSAFS 244 Query: 240 MFIGFFFWYKGLALGGIARVGQVQLLQPFMSLLGAAVIAHEALDASNMLFALAVIVVVAI 299 MFIGF FWY GLA GG+ARVGQ+QLLQPFM+L+G ++ E+LDA +LFALAVI VV I Sbjct: 245 MFIGFLFWYSGLAAGGVARVGQIQLLQPFMTLIGGWLLLGESLDAPTVLFALAVIAVVGI 304 Query: 300 GRRMAVRR 307 GRR +VRR Sbjct: 305 GRRTSVRR 312