BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2211.p (361 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775227.1| threonine dehydratase [Herbaspirillum serope... 517 e-144 ref|YP_999617.1| hypothetical protein Veis_4911 [Verminephrobact... 419 e-115 ref|ZP_07791991.1| hypothetical protein PA39016_000110025 [Pseud... 355 5e-96 ref|ZP_06880271.1| hypothetical protein PaerPAb_21693 [Pseudomon... 353 3e-95 ref|YP_792426.1| hypothetical protein PA14_53260 [Pseudomonas ae... 353 3e-95 >ref|YP_003775227.1| threonine dehydratase [Herbaspirillum seropedicae SmR1] gb|ADJ63319.1| threonine dehydratase protein [Herbaspirillum seropedicae SmR1] Length = 351 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 304/353 (86%), Positives = 323/353 (91%), Gaps = 3/353 (0%) Query: 9 SQAPRTASELLPGLGEIEQAAGIVYAGMAPTPQLCWPLLNQALGAEVWVKHENHAPTGAF 68 S A RT LLP L +IEQAAGIVYAGMAPT QLCWPLLNQALGAEVWVKHENHAPTGAF Sbjct: 2 SHAART---LLPSLTDIEQAAGIVYAGMAPTAQLCWPLLNQALGAEVWVKHENHAPTGAF 58 Query: 69 KVRGGMVYLHHLARQQPQLSGVISATRGNHGQSVGLSARRFGIPATIVVPEGNSREKNAA 128 KVRGGMVYLHHLARQQPQLSGV+SATRGNHGQSVGL+ARR GI ATIVVP+GNSREKNAA Sbjct: 59 KVRGGMVYLHHLARQQPQLSGVVSATRGNHGQSVGLAARRLGISATIVVPQGNSREKNAA 118 Query: 129 MRALGVDLIEHGREFQDSREHAQRLACEQQLHMIPSFHRDLVAGVSTYWMELFAAQPALD 188 MRALGV+LIEHG EFQ+SRE+AQ+LA +QQLHMIPS HRDLVAGV++YWMELFAAQP LD Sbjct: 119 MRALGVELIEHGSEFQESREYAQQLAAQQQLHMIPSLHRDLVAGVASYWMELFAAQPGLD 178 Query: 189 VVLVPIGQGSGMCGAVAARNALGLKTRIIGVVSAHALAYKLSFEAGRKIEAPVSTCIADG 248 VVLVPIGQGSGMCGAVAARNALGL TRIIGVVSAHALAYKLSFEAGRKIE+PVSTCIADG Sbjct: 179 VVLVPIGQGSGMCGAVAARNALGLSTRIIGVVSAHALAYKLSFEAGRKIESPVSTCIADG 238 Query: 249 VACRVPDQASLDVMLSEVDEVVAVTDDEVMDAMKLAFIATHNVAEGAGACALAAALQLRT 308 VACRVPDQASL+V+ SEVDEVVAVTDDEVMDAMKLA+IATHNVAEGAGACALAAA QLR Sbjct: 239 VACRVPDQASLEVLFSEVDEVVAVTDDEVMDAMKLAYIATHNVAEGAGACALAAAWQLRA 298 Query: 309 RLRGKKIGVTLSGGNVDHDVFASILARPGAAADALLAPAQVVSLAQAAQRRNA 361 RLRG K+GVTLSGGNVDHDV A +LAR A AD LLAPAQV+ L QRR+A Sbjct: 299 RLRGLKVGVTLSGGNVDHDVLARVLARAAAPADMLLAPAQVLPLTSLPQRRSA 351 >ref|YP_999617.1| hypothetical protein Veis_4911 [Verminephrobacter eiseniae EF01-2] gb|ABM60599.1| Threonine ammonia-lyase [Verminephrobacter eiseniae EF01-2] Length = 323 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 231/320 (72%), Positives = 264/320 (82%), Gaps = 5/320 (1%) Query: 18 LLPGLGEIEQAAGIVYAGMAPTPQLCWPLLNQALGAEVWVKHENHAPTGAFKVRGGMVYL 77 LLPG EIEQAA +VYA M TPQ WPLLN ALG E WVKHENH PTGAFKVRGG+VYL Sbjct: 5 LLPGHAEIEQAAKLVYAAMPATPQYSWPLLNAALGTETWVKHENHTPTGAFKVRGGLVYL 64 Query: 78 HHLARQQPQLSGVISATRGNHGQSVGLSARRFGIPATIVVPEGNSREKNAAMRALGVDLI 137 Q+ + SGVISATRGNHGQSVG +ARR+GI ATIVVP GNS+EKNAAMRALGV L+ Sbjct: 65 -----QERRASGVISATRGNHGQSVGFAARRYGIAATIVVPHGNSKEKNAAMRALGVTLV 119 Query: 138 EHGREFQDSREHAQRLACEQQLHMIPSFHRDLVAGVSTYWMELFAAQPALDVVLVPIGQG 197 EHG+EFQ+SREHA LA LHMIPSFHRDLV GV+T WMEL AQP LDV+ VPIGQG Sbjct: 120 EHGKEFQESREHAVMLAQRDALHMIPSFHRDLVCGVATCWMELLRAQPDLDVLFVPIGQG 179 Query: 198 SGMCGAVAARNALGLKTRIIGVVSAHALAYKLSFEAGRKIEAPVSTCIADGVACRVPDQA 257 S +C AVAAR AL L+TRIIGVVSAHALAYKLSFE+ K+E+PV+T IADGVACRVPD++ Sbjct: 180 SEICAAVAARRALNLRTRIIGVVSAHALAYKLSFESRSKVESPVTTLIADGVACRVPDES 239 Query: 258 SLDVMLSEVDEVVAVTDDEVMDAMKLAFIATHNVAEGAGACALAAALQLRTRLRGKKIGV 317 SL V+ +V+E++AV+DDEV AMKL F ATHNVAEGAGA ALAAA+Q+R RL G ++G+ Sbjct: 240 SLAVISDQVEEIMAVSDDEVAAAMKLYFTATHNVAEGAGAAALAAAMQIRPRLAGLRVGL 299 Query: 318 TLSGGNVDHDVFASILARPG 337 LSGGNVDHD+FA IL+RP Sbjct: 300 ALSGGNVDHDMFAQILSRPA 319 >ref|ZP_07791991.1| hypothetical protein PA39016_000110025 [Pseudomonas aeruginosa 39016] gb|EFQ37087.1| hypothetical protein PA39016_000110025 [Pseudomonas aeruginosa 39016] dbj|BAK88490.1| hypothetical protein NCGM2_1625 [Pseudomonas aeruginosa NCGM2.S1] Length = 320 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 198/313 (63%), Positives = 240/313 (76%) Query: 22 LGEIEQAAGIVYAGMAPTPQLCWPLLNQALGAEVWVKHENHAPTGAFKVRGGMVYLHHLA 81 L ++QAA IVY + PTPQ+ WPLL +ALG EVW+KHENH P GAFK+RGG+VY HHLA Sbjct: 5 LASLQQAAAIVYQSLPPTPQIRWPLLCEALGCEVWMKHENHLPVGAFKLRGGLVYFHHLA 64 Query: 82 RQQPQLSGVISATRGNHGQSVGLSARRFGIPATIVVPEGNSREKNAAMRALGVDLIEHGR 141 Q + +GVISATRGNHGQSV SA R+GI IVVP GNSREKNAAMR+LG +LIEHG Sbjct: 65 HQGERPAGVISATRGNHGQSVAFSASRYGIQPIIVVPHGNSREKNAAMRSLGAELIEHGE 124 Query: 142 EFQDSREHAQRLACEQQLHMIPSFHRDLVAGVSTYWMELFAAQPALDVVLVPIGQGSGMC 201 +FQ SRE+A A + LH+IP+FH LVAGV++Y +ELFAA LD V VPIG GSG+C Sbjct: 125 DFQASREYAAERARHEGLHLIPAFHPWLVAGVASYSLELFAALADLDEVYVPIGMGSGIC 184 Query: 202 GAVAARNALGLKTRIIGVVSAHALAYKLSFEAGRKIEAPVSTCIADGVACRVPDQASLDV 261 G +AAR+ALGLKTRI+GVVSAHA AY LSFEAG I PV T +ADG+AC PD ++L++ Sbjct: 185 GLIAARDALGLKTRIVGVVSAHAPAYALSFEAGTAISHPVDTRLADGMACSTPDPSALEM 244 Query: 262 MLSEVDEVVAVTDDEVMDAMKLAFIATHNVAEGAGACALAAALQLRTRLRGKKIGVTLSG 321 +L+ D +V V+D E+ AM+L F +THNVAEGAG ALAAA Q R RL+G K+G+ LSG Sbjct: 245 ILAGADRLVRVSDREIGAAMRLCFTSTHNVAEGAGVAALAAAWQERERLKGLKVGLILSG 304 Query: 322 GNVDHDVFASILA 334 NVD +VFA LA Sbjct: 305 ANVDREVFAEQLA 317 >ref|ZP_06880271.1| hypothetical protein PaerPAb_21693 [Pseudomonas aeruginosa PAb1] gb|EGM22538.1| hypothetical protein PA15_07174 [Pseudomonas aeruginosa 152504] Length = 320 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 197/313 (62%), Positives = 240/313 (76%) Query: 22 LGEIEQAAGIVYAGMAPTPQLCWPLLNQALGAEVWVKHENHAPTGAFKVRGGMVYLHHLA 81 L ++QAA IV+ + PTPQ+ WPLL +ALG EVW+KHENH P GAFK+RGG+VY HHLA Sbjct: 5 LASLQQAAAIVHQSLPPTPQIRWPLLCEALGCEVWMKHENHLPVGAFKLRGGLVYFHHLA 64 Query: 82 RQQPQLSGVISATRGNHGQSVGLSARRFGIPATIVVPEGNSREKNAAMRALGVDLIEHGR 141 Q + +GVISATRGNHGQSV SA R+GI IVVP GNSREKNAAMR+LG +LIEHG Sbjct: 65 HQGERPAGVISATRGNHGQSVAFSASRYGIQPIIVVPHGNSREKNAAMRSLGAELIEHGE 124 Query: 142 EFQDSREHAQRLACEQQLHMIPSFHRDLVAGVSTYWMELFAAQPALDVVLVPIGQGSGMC 201 +FQ SRE+A A + LH+IP+FH LVAGV++Y +ELFAA LD V VPIG GSG+C Sbjct: 125 DFQASREYAAERARREGLHLIPAFHPWLVAGVASYSLELFAALADLDEVYVPIGMGSGIC 184 Query: 202 GAVAARNALGLKTRIIGVVSAHALAYKLSFEAGRKIEAPVSTCIADGVACRVPDQASLDV 261 G +AAR+ALGLKTRI+GVVSAHA AY LSFEAG I PV T +ADG+AC PD ++L++ Sbjct: 185 GLIAARDALGLKTRIVGVVSAHAPAYALSFEAGTAISHPVDTRLADGMACSTPDPSALEM 244 Query: 262 MLSEVDEVVAVTDDEVMDAMKLAFIATHNVAEGAGACALAAALQLRTRLRGKKIGVTLSG 321 +L+ D +V V+D E+ AM+L F +THNVAEGAG ALAAA Q R RL+G K+G+ LSG Sbjct: 245 ILAGADRLVRVSDREIGAAMRLCFTSTHNVAEGAGVAALAAAWQERERLKGLKVGLILSG 304 Query: 322 GNVDHDVFASILA 334 NVD +VFA LA Sbjct: 305 ANVDREVFAEQLA 317 >ref|YP_792426.1| hypothetical protein PA14_53260 [Pseudomonas aeruginosa UCBPP-PA14] gb|ABJ10010.1| hypothetical protein PA14_53260 [Pseudomonas aeruginosa UCBPP-PA14] Length = 320 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 197/313 (62%), Positives = 240/313 (76%) Query: 22 LGEIEQAAGIVYAGMAPTPQLCWPLLNQALGAEVWVKHENHAPTGAFKVRGGMVYLHHLA 81 L ++QAA IV+ + PTPQ+ WPLL +ALG EVW+KHENH P GAFK+RGG+VY HHLA Sbjct: 5 LASLQQAAAIVHQSLPPTPQIRWPLLCEALGCEVWMKHENHLPVGAFKLRGGLVYFHHLA 64 Query: 82 RQQPQLSGVISATRGNHGQSVGLSARRFGIPATIVVPEGNSREKNAAMRALGVDLIEHGR 141 Q + +GVISATRGNHGQSV SA R+GI IVVP GNSREKNAAMR+LG +LIEHG Sbjct: 65 HQGERPAGVISATRGNHGQSVAFSASRYGIQPIIVVPHGNSREKNAAMRSLGAELIEHGE 124 Query: 142 EFQDSREHAQRLACEQQLHMIPSFHRDLVAGVSTYWMELFAAQPALDVVLVPIGQGSGMC 201 +FQ SRE+A A + LH+IP+FH LVAGV++Y +ELFAA LD V VPIG GSG+C Sbjct: 125 DFQASREYAAERARHEGLHLIPAFHPWLVAGVASYSLELFAALADLDEVYVPIGMGSGIC 184 Query: 202 GAVAARNALGLKTRIIGVVSAHALAYKLSFEAGRKIEAPVSTCIADGVACRVPDQASLDV 261 G +AAR+ALGLKTRI+GVVSAHA AY LSFEAG I PV T +ADG+AC PD ++L++ Sbjct: 185 GLIAARDALGLKTRIVGVVSAHAPAYALSFEAGTAISHPVDTRLADGMACSTPDPSALEM 244 Query: 262 MLSEVDEVVAVTDDEVMDAMKLAFIATHNVAEGAGACALAAALQLRTRLRGKKIGVTLSG 321 +L+ D +V V+D E+ AM+L F +THNVAEGAG ALAAA Q R RL+G K+G+ LSG Sbjct: 245 ILAGADRLVRVSDREIGAAMRLCFTSTHNVAEGAGVAALAAAWQERERLKGLKVGLILSG 304 Query: 322 GNVDHDVFASILA 334 NVD +VFA LA Sbjct: 305 ANVDREVFAEQLA 317