BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2210.p (429 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775226.1| transcription regulator protein [Herbaspiril... 685 0.0 ref|YP_001352388.1| GntR family transcriptional regulator [Janth... 586 e-165 ref|YP_001099103.1| bifunctional transcriptional regulator/amino... 560 e-157 ref|YP_004753193.1| GntR family transcriptional regulator / aspa... 560 e-157 emb|CAQ37500.1| hypothetical protein RSMK00143 [Ralstonia solana... 458 e-127 >ref|YP_003775226.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63318.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 500 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 348/398 (87%), Positives = 369/398 (92%), Gaps = 3/398 (0%) Query: 12 PAKTVPADAALPGWPMLVRESGESLVDQIVRGVRARIDDKLLRGGARMPSIRQFADAHEI 71 P T P D+ PGWP+L+RESG+SLV+QIVRG+RARIDDKLLR G RMPSIRQFAD ++I Sbjct: 17 PRGTGP-DSGQPGWPLLLRESGDSLVEQIVRGIRARIDDKLLRSGMRMPSIRQFADTNQI 75 Query: 72 SRFTVVEAFDRLVAQGYLESRRGSGFFVKERVAVANGYGNLAAQAEAVAEAERGLDVVWL 131 SRFTVVEA+DRLVAQGYLESRRGSGF+VKER + YG AAQAE E RGLDVVWL Sbjct: 76 SRFTVVEAYDRLVAQGYLESRRGSGFYVKERAPLGGSYG--AAQAELDTEPGRGLDVVWL 133 Query: 132 VRNMFRQMPPHKMPGGGLLPPDWLDGELIANALRAISRDNPSLLLGYGTPLGFLPLRQQL 191 VRNMFRQMPP KMPGGGLLPPDWLDGELIANALRA+SRDNP LLLGYGTP GFLPLRQQL Sbjct: 134 VRNMFRQMPPAKMPGGGLLPPDWLDGELIANALRAVSRDNPQLLLGYGTPQGFLPLRQQL 193 Query: 192 QLKLAELEIAAAPDQFVLTTGVTQAIDTVARHFLRPGDVIFVDDPAWFLMFGSFAALGAK 251 QLKLAELEIAAAP+Q VLTTGVTQ +DTVARHFLRPGDVIFVDDPAWFLMFGSFAALGAK Sbjct: 194 QLKLAELEIAAAPEQIVLTTGVTQGLDTVARHFLRPGDVIFVDDPAWFLMFGSFAALGAK 253 Query: 252 IVGIPRLADGPDIAQLRELAEIHKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFI 311 +VGIPRL DGPDIA+LRELA +HKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDF+ Sbjct: 254 VVGIPRLGDGPDIARLRELAAVHKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFV 313 Query: 312 IVEDDIYCDMHPGSAVQAATRIAALDQLQRVIYLGGFSKTLSANLRVGFIATSAELARSL 371 IVEDDIYCDMHPGSAVQ ATRIAALDQLQRVIYLGGFSKTLSANLRVG+IATSAELARSL Sbjct: 314 IVEDDIYCDMHPGSAVQPATRIAALDQLQRVIYLGGFSKTLSANLRVGYIATSAELARSL 373 Query: 372 ADRKLLSTLTTGEIGERVAYRVLSEGHYRKHAERLRAR 409 ADRKLLSTLTTGEIGERVAY+VLSEGHYRKHAER+RAR Sbjct: 374 ADRKLLSTLTTGEIGERVAYKVLSEGHYRKHAERVRAR 411 >ref|YP_001352388.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR89693.1| transcriptional regulator, GntR family [Janthinobacterium sp. Marseille] Length = 488 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 298/436 (68%), Positives = 353/436 (80%), Gaps = 26/436 (5%) Query: 1 MTNTVKHLRSIPAKTVPADAALPGWPMLVRESGESLVDQIVRGVRARIDDKLLRGGARMP 60 MTNT K + PA T P+L R +G SL++QIV+ + +RIDDK+LR GARMP Sbjct: 1 MTNTAKSPSTTPATTEAPR------PLLSRTAGSSLIEQIVQLITSRIDDKILRTGARMP 54 Query: 61 SIRQFADAHEISRFTVVEAFDRLVAQGYLESRRGSGFFVKERVAVANGYGNLAAQAEAV- 119 SIRQF+D H++SRFTVVEA+DRLVA G LESRRGSGF+V++R + L +A+ + Sbjct: 55 SIRQFSDQHQVSRFTVVEAYDRLVAGGLLESRRGSGFYVRDRAPM------LTPRAQGLQ 108 Query: 120 AEAERGLDVVWLVRNMFRQMPPHKMPGGGLLPPDWLDGELIANALRAISRDNPSLLLGYG 179 + A++ +DVVWLVRNMFRQ+PP KMPG GLLP +WLDG+L+ANALRA+SR NP+LLL YG Sbjct: 109 SAAQQPVDVVWLVRNMFRQLPPQKMPGVGLLPNEWLDGDLVANALRAVSRQNPNLLLQYG 168 Query: 180 TPLGFLPLRQQLQLKLAELEIAAAPDQFVLTTGVTQAIDTVARHFLRPGDVIFVDDPAWF 239 P GFLPLRQQLQLK+AELEI+A PDQFV T GVTQ +D VARH+++PGD IFVDDP WF Sbjct: 169 IPQGFLPLRQQLQLKMAELEISATPDQFVTTAGVTQGLDLVARHYIQPGDTIFVDDPGWF 228 Query: 240 LMFGSFAALGAKIVGIPRLADGPDIAQLRELAEIHKPKLYVINSVLHNPTSTSLSAAKAF 299 LMFGSFAALGAK+VGIPRL DGPDIAQL LAE+H+PKL++INS+LHNPTSTSLSAAKAF Sbjct: 229 LMFGSFAALGAKVVGIPRLPDGPDIAQLTALAELHRPKLFIINSILHNPTSTSLSAAKAF 288 Query: 300 QVLRIAEEHDFIIVEDDIYCDMHPGSAVQAATRIAALDQLQRVIYLGGFSKTLSANLRVG 359 QVL+IAE++DF+IVEDDIYCDMHPG+AVQAATRIAALDQL RVIYLGGFSKTL+ANLRVG Sbjct: 289 QVLKIAEQYDFMIVEDDIYCDMHPGAAVQAATRIAALDQLNRVIYLGGFSKTLAANLRVG 348 Query: 360 FIATSAELARSLADRKLLSTLTTGEIGERVAYRVLSEGHYRKHAERLRAR--------AR 411 FIATS E+AR LADRK+L+ LTT EI ERV YR+LSEGHYRKH +RLR + R Sbjct: 349 FIATSPEIARQLADRKMLTALTTTEITERVVYRILSEGHYRKHTDRLRTKLNAVRDKTIR 408 Query: 412 RCARQG-----HAPAG 422 + R G H PAG Sbjct: 409 QMERIGIKIHFHTPAG 424 >ref|YP_001099103.1| bifunctional transcriptional regulator/amino transferase [Herminiimonas arsenicoxydans] emb|CAL60976.1| putative transcription regulator aminotransferase GntR-related [Herminiimonas arsenicoxydans] Length = 486 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 294/409 (71%), Positives = 338/409 (82%), Gaps = 13/409 (3%) Query: 1 MTNTVKHLRSIPAKTVPADAALPGWPMLVRESGESLVDQIVRGVRARIDDKLLRGGARMP 60 MT+T K P A P P+L RE+G SL+ QIV+ V ARIDDKLLR GARMP Sbjct: 1 MTSTAK-----PNNAASASNTEPPRPLLSRETGGSLIAQIVQLVTARIDDKLLRTGARMP 55 Query: 61 SIRQFADAHEISRFTVVEAFDRLVAQGYLESRRGSGFFVKERVAVANGYGNLAAQAEAVA 120 SIRQF+D H++SRFTVVEA+DRLVA G LESRRGSGF+V++R + LA +A+ Sbjct: 56 SIRQFSDQHKVSRFTVVEAYDRLVAGGLLESRRGSGFYVRDRTPM------LAPRAQRTN 109 Query: 121 EAERGLDVVWLVRNMFRQMPPHKMPGGGLLPPDWLDGELIANALRAISRDNPSLLLGYGT 180 A + +DVVWLVRNMFRQ+PP KMPG GLLP +WLD +L+ANALRA+SR N L L YG Sbjct: 110 TARQPVDVVWLVRNMFRQLPPQKMPGVGLLPNEWLDADLVANALRAVSRQN--LPLQYGN 167 Query: 181 PLGFLPLRQQLQLKLAELEIAAAPDQFVLTTGVTQAIDTVARHFLRPGDVIFVDDPAWFL 240 P GFLPLRQQLQLKLAELEI+A PDQFV T GVTQA+D VARH+++PGD IFVDDPAWFL Sbjct: 168 PQGFLPLRQQLQLKLAELEISATPDQFVTTLGVTQALDLVARHYIQPGDTIFVDDPAWFL 227 Query: 241 MFGSFAALGAKIVGIPRLADGPDIAQLRELAEIHKPKLYVINSVLHNPTSTSLSAAKAFQ 300 MFGSFA LGAK+VGIPRL DGPDIAQL ELA +H+PKL+VINSVLHNPTSTSLSAAKAFQ Sbjct: 228 MFGSFAMLGAKVVGIPRLPDGPDIAQLAELAALHRPKLFVINSVLHNPTSTSLSAAKAFQ 287 Query: 301 VLRIAEEHDFIIVEDDIYCDMHPGSAVQAATRIAALDQLQRVIYLGGFSKTLSANLRVGF 360 VL+IAE++DF+IVEDDIYCDMHPG+ VQ ATRIAALDQL RVIYLGGFSKTL+ANLRVGF Sbjct: 288 VLKIAEQYDFMIVEDDIYCDMHPGTTVQPATRIAALDQLNRVIYLGGFSKTLAANLRVGF 347 Query: 361 IATSAELARSLADRKLLSTLTTGEIGERVAYRVLSEGHYRKHAERLRAR 409 IATS E+A+ L DRK+L+TLTT EI ERV YR+LSEGHYRKHA+RLR + Sbjct: 348 IATSPEIAKHLCDRKMLTTLTTTEITERVVYRILSEGHYRKHADRLRNK 396 >ref|YP_004753193.1| GntR family transcriptional regulator / aspartate aminotransferase [Collimonas fungivorans Ter331] gb|AEK62370.1| Transcriptional regulator, GntR family / Aspartate aminotransferase [Collimonas fungivorans Ter331] Length = 488 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 283/410 (69%), Positives = 335/410 (81%), Gaps = 12/410 (2%) Query: 1 MTNTVKHLRSIPAKTVPADAALPGWPM-LVRESGESLVDQIVRGVRARIDDKLLRGGARM 59 MTNTV P + + ++ LP P L R+S SLV+QIVR + +RI D+LLR GARM Sbjct: 1 MTNTV------PPRKL-SNGQLPSAPQPLSRDSDTSLVEQIVRSIESRISDRLLRSGARM 53 Query: 60 PSIRQFADAHEISRFTVVEAFDRLVAQGYLESRRGSGFFVKERVAVANGYGNLAAQAEAV 119 PSIRQFAD+H +SRFTVVEA+DRLVA+G LESRRGSGF+V+ER + G+ AA + Sbjct: 54 PSIRQFADSHSVSRFTVVEAYDRLVAKGCLESRRGSGFYVRERSPLLAERGSNAASDKQ- 112 Query: 120 AEAERGLDVVWLVRNMFRQMPPHKMPGGGLLPPDWLDGELIANALRAISRDNPSLLLGYG 179 + +DVVWLVRNM +Q P KMPG G+ P +WLD +LIANALR+ISR NP+ LL YG Sbjct: 113 ---PQLIDVVWLVRNMHQQAPNKKMPGSGMFPSEWLDADLIANALRSISRQNPAQLLSYG 169 Query: 180 TPLGFLPLRQQLQLKLAELEIAAAPDQFVLTTGVTQAIDTVARHFLRPGDVIFVDDPAWF 239 P GFLPLRQQLQLK+AELEIAA P+QFV TTGVTQA+D VARHF +PGDVI VDDP+WF Sbjct: 170 IPQGFLPLRQQLQLKMAELEIAATPEQFVTTTGVTQALDLVARHFTQPGDVILVDDPSWF 229 Query: 240 LMFGSFAALGAKIVGIPRLADGPDIAQLRELAEIHKPKLYVINSVLHNPTSTSLSAAKAF 299 LMF SFAALGAK+VG+PRLADGPD+A+L EL +HKPKLYV+ SVLHNPTSTSLSAAKAF Sbjct: 230 LMFASFAALGAKVVGVPRLADGPDMAKLAELVALHKPKLYVLVSVLHNPTSTSLSAAKAF 289 Query: 300 QVLRIAEEHDFIIVEDDIYCDMHPGSAVQAATRIAALDQLQRVIYLGGFSKTLSANLRVG 359 Q+L++AEEHDF+IVEDDIYCDMHPGSA+Q ATRIAALDQL RVIY+GGFSKTLS NLR G Sbjct: 290 QILKLAEEHDFMIVEDDIYCDMHPGSAIQPATRIAALDQLNRVIYMGGFSKTLSPNLRSG 349 Query: 360 FIATSAELARSLADRKLLSTLTTGEIGERVAYRVLSEGHYRKHAERLRAR 409 FIATS ELA+ ADRK+L+ LT+ E+GERV Y++LSEGHYRKH +RLR + Sbjct: 350 FIATSLELAQHFADRKMLTNLTSAEVGERVVYKILSEGHYRKHLDRLRNK 399 >emb|CAQ37500.1| hypothetical protein RSMK00143 [Ralstonia solanacearum MolK2] Length = 511 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 232/378 (61%), Positives = 285/378 (75%), Gaps = 8/378 (2%) Query: 35 SLVDQIVRGVRARIDDKLLRGGARMPSIRQFADAHEISRFTVVEAFDRLVAQGYLESRRG 94 +LVDQ+ R RID+++ R G RMPSIRQ A ISRFTVVEA++RLVAQGYLESRRG Sbjct: 55 TLVDQLTEWARMRIDERVFRAGMRMPSIRQLAQEKSISRFTVVEAYERLVAQGYLESRRG 114 Query: 95 SGFFVKERVAVANGYGNLAAQAEAVAEAERGLDVVWLVRNMFRQMPPHKMPGGGLLPPDW 154 SGF+VKER + L + A + + R +DV WL+RNMF P K PG G LP W Sbjct: 115 SGFYVKER------HTPLPEEPAAPSTSARKIDVAWLLRNMFHSAEPRKAPGIGFLPNGW 168 Query: 155 LDGELIANALRAISRDNPSLLLGYGTPLGFLPLRQQLQLKLAELEIAAAPDQFVLTTGVT 214 LDGELIANALRA+ R N + L +GTP GFLPLRQQLQ +LAELEI A PDQ V+T+G+T Sbjct: 169 LDGELIANALRALGRQNGNQFLTWGTPQGFLPLRQQLQTRLAELEIGARPDQIVMTSGIT 228 Query: 215 QAIDTVARHFLRPGDVIFVDDPAWFLMFGSFAALGAKIVGIPRLADGPDIAQLRELAEIH 274 Q++D +AR +++PGD + V DPAWFLMFG FAA GA+++G+P +GPD+ L L ++ Sbjct: 229 QSLDLIARQYVQPGDTVLVGDPAWFLMFGRFAAQGAQVIGVPYTTEGPDLVALEGLVQVR 288 Query: 275 KPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFIIVEDDIYCDMHPGSAVQAATRIA 334 +PKL VINSVLHNPT TSLSAAKAFQ+LR+AE++ F+IVEDDIY D+ P ATR+A Sbjct: 289 RPKLLVINSVLHNPTGTSLSAAKAFQLLRLAEQYGFLIVEDDIYGDLAPPG--HPATRLA 346 Query: 335 ALDQLQRVIYLGGFSKTLSANLRVGFIATSAELARSLADRKLLSTLTTGEIGERVAYRVL 394 +LDQL+RVIYLG FSKTL+ANLRVGFIA ELA++L D KLL+ L T EI ERV Y+VL Sbjct: 347 SLDQLRRVIYLGSFSKTLAANLRVGFIACHPELAKNLTDGKLLAGLATPEINERVLYKVL 406 Query: 395 SEGHYRKHAERLRARARR 412 +EG YRKH ER+RAR R Sbjct: 407 TEGQYRKHVERVRARLDR 424