BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2209.p         (97 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775226.1| transcription regulator protein [Herbaspiril...   154   5e-36
ref|YP_004753193.1| GntR family transcriptional regulator / aspa...   124   5e-27
ref|YP_001099103.1| bifunctional transcriptional regulator/amino...   114   6e-24
ref|YP_001352388.1| GntR family transcriptional regulator [Janth...   112   2e-23
ref|YP_001898432.1| GntR family transcriptional regulator with a...   100   1e-19

>ref|YP_003775226.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63318.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 500

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 73/87 (83%), Positives = 81/87 (93%)

Query: 11  GARDKVMRQLERMGMEVGDPPPCGMFLWVDTGRDTNVMTEEAMEQGFLLAPGSLFSPAQL 70
           GARDKVMRQLER+GM+V + PPCGMFLWVDTGRDTNVMTE AM++GFLLAPGSLFSPAQL
Sbjct: 414 GARDKVMRQLERLGMDVVEAPPCGMFLWVDTGRDTNVMTEAAMQEGFLLAPGSLFSPAQL 473

Query: 71  PSTRMRINVAGMSDPGIWRFLEKAMDR 97
           PST MRINVA M+DPGIWRFL +AM+R
Sbjct: 474 PSTYMRINVASMADPGIWRFLAQAMER 500


>ref|YP_004753193.1| GntR family transcriptional regulator / aspartate aminotransferase
           [Collimonas fungivorans Ter331]
 gb|AEK62370.1| Transcriptional regulator, GntR family / Aspartate aminotransferase
           [Collimonas fungivorans Ter331]
          Length = 488

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/81 (67%), Positives = 68/81 (83%)

Query: 13  RDKVMRQLERMGMEVGDPPPCGMFLWVDTGRDTNVMTEEAMEQGFLLAPGSLFSPAQLPS 72
           RD+ +RQ+ER+GM V    P G+F+W DTG DTNVM E+A+ +GFLLAPG+LFSP+QLPS
Sbjct: 404 RDRTIRQMERIGMTVDISTPAGIFVWADTGHDTNVMAEKALAEGFLLAPGALFSPSQLPS 463

Query: 73  TRMRINVAGMSDPGIWRFLEK 93
           +RMRINVA MSDP IWRFLE+
Sbjct: 464 SRMRINVAAMSDPAIWRFLEQ 484


>ref|YP_001099103.1| bifunctional transcriptional regulator/amino transferase
           [Herminiimonas arsenicoxydans]
 emb|CAL60976.1| putative transcription regulator aminotransferase GntR-related
           [Herminiimonas arsenicoxydans]
          Length = 486

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/83 (62%), Positives = 65/83 (78%)

Query: 13  RDKVMRQLERMGMEVGDPPPCGMFLWVDTGRDTNVMTEEAMEQGFLLAPGSLFSPAQLPS 72
           RDK +RQ+ER+G+++    P GMF+W D G D+N +TE AMEQG+LLAPGSLFSP QLPS
Sbjct: 401 RDKTVRQMERIGIKINISTPAGMFVWTDVGCDSNALTERAMEQGYLLAPGSLFSPNQLPS 460

Query: 73  TRMRINVAGMSDPGIWRFLEKAM 95
           T MR NVA M+DPGI  FLE+ +
Sbjct: 461 TNMRFNVAAMADPGILPFLEREI 483


>ref|YP_001352388.1| GntR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gb|ABR89693.1| transcriptional regulator, GntR family [Janthinobacterium sp.
           Marseille]
          Length = 488

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/85 (60%), Positives = 65/85 (76%)

Query: 13  RDKVMRQLERMGMEVGDPPPCGMFLWVDTGRDTNVMTEEAMEQGFLLAPGSLFSPAQLPS 72
           RDK +RQ+ER+G+++    P GMF W D G D  ++ E+AMEQG+LLAPGSLFSP QLPS
Sbjct: 403 RDKTIRQMERIGIKIHFHTPAGMFAWTDVGCDATILAEKAMEQGYLLAPGSLFSPNQLPS 462

Query: 73  TRMRINVAGMSDPGIWRFLEKAMDR 97
           T MR NVA M+DPGI RFLE+ + +
Sbjct: 463 TNMRFNVAAMADPGIMRFLEREIGK 487


>ref|YP_001898432.1| GntR family transcriptional regulator with aminotransferase domain
           [Ralstonia pickettii 12J]
 gb|ACD26000.1| transcriptional regulator, GntR family with aminotransferase domain
           [Ralstonia pickettii 12J]
          Length = 492

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/86 (54%), Positives = 61/86 (70%)

Query: 12  ARDKVMRQLERMGMEVGDPPPCGMFLWVDTGRDTNVMTEEAMEQGFLLAPGSLFSPAQLP 71
           ARD V R LERMG+++      GMFLW DTG+DTN +     EQG++ APGSLFSP+Q+P
Sbjct: 405 ARDGVQRSLERMGLKLFAQQGAGMFLWADTGQDTNAIARAGHEQGYVFAPGSLFSPSQMP 464

Query: 72  STRMRINVAGMSDPGIWRFLEKAMDR 97
           ST MR N+A  +DP + RFL + +DR
Sbjct: 465 STWMRFNIATSADPELLRFLAEQLDR 490