BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2202.p (652 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776932.1| methyl-accepting chemotaxis I protein [Herba... 553 e-155 ref|YP_970318.1| methyl-accepting chemotaxis sensory transducer ... 392 e-106 ref|YP_004235671.1| methyl-accepting chemotaxis sensory transduc... 384 e-104 gb|EEC77111.1| hypothetical protein OsI_15534 [Oryza sativa Indi... 352 1e-94 ref|YP_003775223.1| hypothetical protein Hsero_1805 [Herbaspiril... 275 2e-71 >ref|YP_003776932.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] gb|ADJ65024.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 646 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 357/456 (78%), Positives = 410/456 (89%) Query: 39 MRSWINHLNYSRKFVLIGALAFMLFIVPTTLLVRSNLDDLATAQRESLALAPGRELLLLL 98 MRS INHL +SRKF LIGALAF+LFIVPTTLLVRSNL DLA A+RE LA+ PGR+LLL+L Sbjct: 1 MRSLINHLRFSRKFALIGALAFLLFIVPTTLLVRSNLQDLAIAEREQLAVEPGRDLLLML 60 Query: 99 KQMQQHRGLSALYLADGDGAAASRAERQKEVDATFDRVRSGLKPLEDKALTDALDGLNAD 158 KQMQQHRGLSALYL+D + AA RAERQK+V+AT +RVR+G+ PL+DK L ++L+ + + Sbjct: 61 KQMQQHRGLSALYLSDTNAGAADRAERQKQVEATLERVRTGILPLQDKELMESLERVASQ 120 Query: 159 WRALTQSIASKSINGAQSNVQHAQLIKRELDLLDDVANSSGLALEAEAALFYVQRAVMSE 218 WRAL Q+++SK+I GAQSN+QHA+LI ELDL+D +ANSSGLALEAEAALFYVQRAVM+E Sbjct: 121 WRALAQAVSSKAITGAQSNLQHAELIALELDLIDQLANSSGLALEAEAALFYVQRAVMNE 180 Query: 219 LPQLTEALGQARARGAVMLGRGQADAEERARLENLSDRARRSYESARRSLTLAAGRHPLP 278 LPQLTEALGQ RARGAVMLGRGQA AEERARLENL+DRARRSY+SAR+SLTLAAGRH LP Sbjct: 181 LPQLTEALGQTRARGAVMLGRGQASAEERARLENLADRARRSYDSARKSLTLAAGRHALP 240 Query: 279 AEVESARAAAVTAADEAFKMADSAIVRADQLTMPAPQWVSTMTRIIDTQFVLVTTSFDMM 338 A +E ARA A+ AA+E FK+ADSAI+RAD L+MPAP+WV+TMTRIIDTQFVLV SFD+M Sbjct: 241 ANLERARAEALKAAEEGFKLADSAIIRADNLSMPAPEWVATMTRIIDTQFVLVNASFDLM 300 Query: 339 RDELQAKIPRLRNELIVLCASLAVLAMAALWLMVAITRATTSSLSEAVRLTEAVSAGDLT 398 RDELQAKIPR+RNEL++LCA L +LA AALW+MVAITRATTS++++AVRLTEA+SAGDLT Sbjct: 301 RDELQAKIPRVRNELLMLCALLGLLAAAALWVMVAITRATTSAINDAVRLTEAISAGDLT 360 Query: 399 QHVEVKGSDEVARLLMAMQAMTAQLSMVVGSVRSNSESVATASAQIAQGNADLSKRTEEQ 458 QHV++ GSDEVARLL AMQAMTA+LS VV SVRSNSESVATASAQIAQGNADLSKRTEEQ Sbjct: 361 QHVQINGSDEVARLLTAMQAMTARLSTVVSSVRSNSESVATASAQIAQGNADLSKRTEEQ 420 Query: 459 ASALQQTAASMEELGSTVQQNADGARQAGQLALSTA 494 ASALQQTAASMEELGSTV QNADGARQAG LA A Sbjct: 421 ASALQQTAASMEELGSTVAQNADGARQAGDLAREAA 456 >ref|YP_970318.1| methyl-accepting chemotaxis sensory transducer [Acidovorax citrulli AAC00-1] gb|ABM32544.1| methyl-accepting chemotaxis sensory transducer [Acidovorax citrulli AAC00-1] Length = 642 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 290/549 (52%), Positives = 368/549 (67%), Gaps = 21/549 (3%) Query: 39 MRSWINHLNYSRKFVLIGALAFMLFIVPTTLLVRSNLDDLATAQRESLALAPGRELLLLL 98 M WI +L +SRKFVLIG +AF +F++PT LL+R+ L D+ TA +E LAP RELL LL Sbjct: 1 MTHWIGNLKFSRKFVLIGCIAFAMFLLPTVLLMRTTLADIQTALQERNGLAPARELLKLL 60 Query: 99 KQMQQHRGLSALYLADGDGAAASRAERQKEVDATFDRVRSGLKPLEDKALTDALDGLNAD 158 + QQHRGLSA L D AAA R +Q EV+A+ R + L L D AL LD + D Sbjct: 61 QLTQQHRGLSASLLGGTDSAAAPRQAKQAEVEASIGRAKQVLAGLGDSALGQRLDSIQGD 120 Query: 159 WRALTQSIASKSINGAQSNVQHAQLIKRELDLLDDVANSSGLALEAEAALFYVQRAVMSE 218 W L +A K++ GA SN HA LI+R L L+DDVANSSGLA + + Y+Q+AV+ + Sbjct: 121 WNTLASGVAGKTLRGADSNRMHAALIERMLGLIDDVANSSGLARDTDIRTHYLQKAVLGQ 180 Query: 219 LPQLTEALGQARARGAVMLGRGQADAEERARLENLSDRARRSYESARRSLTLAAGRHPLP 278 LPQLTE+LGQ RARGA++L RG+ EERAR+E LSDR R+ Y AR++L LAAG LP Sbjct: 181 LPQLTESLGQMRARGALVLARGEVAPEERARIEALSDRVRKYYGDARKALELAAG-GSLP 239 Query: 279 AEVESARAAAVTAADEAFKMADSAIVRADQLTMPAPQWVSTMTRIIDTQFVLVTTSFDMM 338 A VE AR AA+ AA E FK+AD IV+AD L+MP+ WV+ MTRIIDTQF LV SFD++ Sbjct: 240 ATVEKARDAALAAAQEGFKLADDNIVKADVLSMPSTDWVARMTRIIDTQFELVGVSFDVL 299 Query: 339 RDELQAKIPRLRNELIVLCASLAVLAMAALWLMVAITRATTSSLSEAVRLTEAVSAGDLT 398 L ++I R+R ++VL A LA LA AALW+M +TRATT S+ EAVR+ EAV+ GDLT Sbjct: 300 EQSLDSQIARMRQSMLVLGAVLAALAAAALWIMAMVTRATTRSIDEAVRIAEAVADGDLT 359 Query: 399 QHVEVKGSDEVARLLMAMQAMTAQLSMVVGSVRSNSESVATASAQIAQGNADLSKRTEEQ 458 VE +G DEVARLL A+ AMT +L VVG+VR N+E+VA+AS QIAQGNADLS+RTE Q Sbjct: 360 AQVEPQGRDEVARLLHALAAMTRKLGTVVGTVRLNAENVASASVQIAQGNADLSQRTESQ 419 Query: 459 ASALQQTAASMEELGSTVQQNADGARQAGQLALSTALNSLQAQQGEISNMNEKNAQNIAQ 518 ASAL+QTAASMEELGSTV+QNAD ARQA QLA S A + AQ G + Q + + Sbjct: 420 ASALEQTAASMEELGSTVRQNADNARQADQLARSAA--GVAAQGGTV-------VQQVVE 470 Query: 519 LPALLNQISVRLADEMGAIQ---YQGEL----QATVAARLNELGN----TIGENSSNMAR 567 ++ S R+ D +G I +Q + A AAR E G GE S R Sbjct: 471 TMRGIHTSSARIGDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQR 530 Query: 568 DALSARQLQ 576 A +A++++ Sbjct: 531 SASAAKEIK 539 >ref|YP_004235671.1| methyl-accepting chemotaxis sensory transducer [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX47104.1| methyl-accepting chemotaxis sensory transducer [Acidovorax avenae subsp. avenae ATCC 19860] Length = 655 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 281/549 (51%), Positives = 362/549 (65%), Gaps = 21/549 (3%) Query: 39 MRSWINHLNYSRKFVLIGALAFMLFIVPTTLLVRSNLDDLATAQRESLALAPGRELLLLL 98 M WI +L +SRKFVLIG +AF +F++PT LL+R+ L D+ TA +E LAP RELL LL Sbjct: 14 MTHWIGNLKFSRKFVLIGCIAFAMFLLPTVLLMRTTLADVQTALQERRGLAPARELLKLL 73 Query: 99 KQMQQHRGLSALYLADGDGAAASRAERQKEVDATFDRVRSGLKPLEDKALTDALDGLNAD 158 + QQHRGLSA L + AAA R +Q EV+A+ R + L L D L LD + D Sbjct: 74 QLAQQHRGLSASMLGGTESAAAPRQAKQAEVEASLGRAKQALTGLGDNTLGQRLDSIQGD 133 Query: 159 WRALTQSIASKSINGAQSNVQHAQLIKRELDLLDDVANSSGLALEAEAALFYVQRAVMSE 218 W L +A K++ GA SN H LI+R L L+DDVANSSGLA + + Y+Q+AV+ + Sbjct: 134 WNTLASGVAGKTLRGADSNRLHVALIERMLGLIDDVANSSGLARDTDIRTHYLQKAVLGQ 193 Query: 219 LPQLTEALGQARARGAVMLGRGQADAEERARLENLSDRARRSYESARRSLTLAAGRHPLP 278 LPQLTE+LGQ RARGA++L RG+ EERAR+E LSDR R+ Y AR++L LAAG LP Sbjct: 194 LPQLTESLGQMRARGALVLARGEVAPEERARIEALSDRVRKYYGDARKALELAAG-GSLP 252 Query: 279 AEVESARAAAVTAADEAFKMADSAIVRADQLTMPAPQWVSTMTRIIDTQFVLVTTSFDMM 338 VE AR AA+ AA E FK+AD IV+AD L+MP+ WV+ MTRIIDTQF LV SFD++ Sbjct: 253 PAVEKARDAALAAAQEGFKLADDNIVKADVLSMPSTDWVARMTRIIDTQFELVAASFDVL 312 Query: 339 RDELQAKIPRLRNELIVLCASLAVLAMAALWLMVAITRATTSSLSEAVRLTEAVSAGDLT 398 L +I ++R ++VL LA LA AALW+M +TRATT S+ EAVR+ EAV+ GDLT Sbjct: 313 EQSLDDQIAQMRQGMLVLGLVLAALAAAALWIMAMVTRATTRSIGEAVRIAEAVADGDLT 372 Query: 399 QHVEVKGSDEVARLLMAMQAMTAQLSMVVGSVRSNSESVATASAQIAQGNADLSKRTEEQ 458 VE +G DEVARLL A+ AMT +L VVG+VR N+E+VA+AS QIAQGN DLS+RTE Q Sbjct: 373 AQVEPQGRDEVARLLHALAAMTRKLGTVVGTVRLNAENVASASVQIAQGNTDLSQRTESQ 432 Query: 459 ASALQQTAASMEELGSTVQQNADGARQAGQLALSTALNSLQAQQGEISNMNEKNAQNIAQ 518 AS+L++TAASMEELGSTV+QNAD ARQA QLA S A + AQ G + Q + + Sbjct: 433 ASSLEETAASMEELGSTVRQNADNARQADQLARSAA--GVAAQGGTV-------VQQVVE 483 Query: 519 LPALLNQISVRLADEMGAIQ---YQGEL----QATVAARLNELGN----TIGENSSNMAR 567 ++ S R+ D +G I +Q + A AAR E G GE S R Sbjct: 484 TMRGIHTSSARIGDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQR 543 Query: 568 DALSARQLQ 576 A +A++++ Sbjct: 544 SASAAKEIK 552 >gb|EEC77111.1| hypothetical protein OsI_15534 [Oryza sativa Indica Group] Length = 2209 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 261/549 (47%), Positives = 339/549 (61%), Gaps = 46/549 (8%) Query: 39 MRSWINHLNYSRKFVLIGALAFMLFIVPTTLLVRSNLDDLATAQRESLALAPGRELLLLL 98 M WI +L +SRKFVLIG +AF +F++PT LL+R L D+ TA +E LAP RELL LL Sbjct: 1 MNHWIGNLKFSRKFVLIGCIAFAMFLLPTALLMRGTLADIQTALQERRGLAPARELLKLL 60 Query: 99 KQMQQHRGLSALYLADGDGAAASRAERQKEVDATFDRVRSGLKPLEDKALTDALDGLNAD 158 + QQHRGLSA L + AAA R +Q EV+A+F R + L L D L LD + D Sbjct: 61 QLTQQHRGLSASMLGGTESAAAPRQAKQVEVEASFGRAKQALAGLGDSTLGQRLDSIQGD 120 Query: 159 WRALTQSIASKSINGAQSNVQHAQLIKRELDLLDDVANSSGLALEAEAALFYVQRAVMSE 218 W L +A K++ GA SN H LI+R L L+DDVANSSGLA + + Y+Q+AV+ + Sbjct: 121 WNTLASGVAGKTLRGADSNRLHVALIERVLGLIDDVANSSGLARDTDIRTHYLQKAVLGQ 180 Query: 219 LPQLTEALGQARARGAVMLGRGQADAEERARLENLSDRARRSYESARRSLTLAAGRHPLP 278 LPQLTE+LGQ RARGA++L RG+ EERAR+E+LSDR R+ Y AR++L LAAG P Sbjct: 181 LPQLTESLGQMRARGALVLARGEVAPEERARIESLSDRVRKYYGDARKALELAAGGSLTP 240 Query: 279 AEVESARAAAVTAADEAFKMADSAIVRADQLTMPAPQWVSTMTRIIDTQFVLVTTSFDMM 338 A VE A AA+ AA + S R I F LV SFD++ Sbjct: 241 A-VEQAGTAALGAAQKG----------------------SAGRRNI---FELVGASFDVL 274 Query: 339 RDELQAKIPRLRNELIVLCASLAVLAMAALWLMVAITRATTSSLSEAVRLTEAVSAGDLT 398 L +I ++R ++VL LA LA AAL +M +TRATT S+ EAVR+ EAV+ GDLT Sbjct: 275 EQSLDNQIAQMRQGMLVLGLVLAALAAAALCIMAMVTRATTRSIGEAVRIAEAVADGDLT 334 Query: 399 QHVEVKGSDEVARLLMAMQAMTAQLSMVVGSVRSNSESVATASAQIAQGNADLSKRTEEQ 458 VE +G DEVARLL A+ AMT +L VVG+VR N+E+VA+AS QIAQGN+DLS+RTE Q Sbjct: 335 AQVEPQGRDEVARLLHALAAMTRKLGTVVGTVRLNAENVASASVQIAQGNSDLSQRTESQ 394 Query: 459 ASALQQTAASMEELGSTVQQNADGARQAGQLALSTALNSLQAQQGEISNMNEKNAQNIAQ 518 AS+L++TAASMEELGSTV+QNAD ARQA QLA S A + AQ G + Q + + Sbjct: 395 ASSLEETAASMEELGSTVRQNADNARQADQLARSAA--GVAAQGGTV-------VQQVVE 445 Query: 519 LPALLNQISVRLADEMGAIQ---YQGEL----QATVAARLNELGN----TIGENSSNMAR 567 ++ S R+ D +G I +Q + A AAR E G GE S R Sbjct: 446 TMRGIHTSSARIGDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQR 505 Query: 568 DALSARQLQ 576 A +A++++ Sbjct: 506 SASAAKEIK 514 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 178/327 (54%), Positives = 226/327 (69%), Gaps = 13/327 (3%) Query: 227 GQARARGAVMLGRGQADAEERARLENLSDRARRSYESARRSLTLAAGRHPLPAEVESARA 286 G RARGA++L RG+ EERAR+E+LSDR R+ Y AR++L LAAG LP VE AR Sbjct: 643 GGMRARGALVLARGEVAPEERARIESLSDRVRKYYGDARKALELAAG-GSLPPAVEKARD 701 Query: 287 AAVTAADEAFKMADSAIVRADQLTMPAPQWVSTMTRIIDTQFVLVTTSFDMMRDELQAKI 346 AA+ AA E FK+AD IV+AD L+MP+ WV+ MTRIIDTQF LV SFD++ L +I Sbjct: 702 AALAAAQEGFKLADDNIVKADVLSMPSTDWVARMTRIIDTQFELVGASFDVLEQSLDNQI 761 Query: 347 PRLRNELIVLCASLAVLAMAALWLMVAITRATTSSLSEAVRLTEAVSAGDLTQHVEVKGS 406 ++R ++VL LA LA AAL +M +TRATT S+ EAVR+ EAV+ GDLT VE +G Sbjct: 762 AQMRQGMLVLGLVLAALAAAALCIMAMVTRATTRSIGEAVRIAEAVADGDLTAQVEPQGR 821 Query: 407 DEVARLLMAMQAMTAQLSMVVGSVRSNSESVATASAQIAQGNADLSKRTEEQASALQQTA 466 DEVARLL A+ AMT +L VVG+VR N+E+VA+AS QIAQGN+DLS+RTE QASAL++TA Sbjct: 822 DEVARLLHALAAMTRKLGTVVGTVRLNAENVASASVQIAQGNSDLSQRTESQASALEETA 881 Query: 467 ASMEELGSTVQQNADGARQAGQLALSTALNSLQAQQGEISNMNEKNAQNIAQLPALLNQI 526 ASMEELGSTV+QNAD ARQA QLA S A + AQ G + Q + + ++ Sbjct: 882 ASMEELGSTVRQNADNARQADQLARSAA--GVAAQGGTV-------VQQVVETMRGIHTS 932 Query: 527 SVRLADEMGAIQ---YQGELQATVAAR 550 S R+ D +G I +Q + A AAR Sbjct: 933 SARIGDIIGVIDGIAFQTNILALNAAR 959 >ref|YP_003775223.1| hypothetical protein Hsero_1805 [Herbaspirillum seropedicae SmR1] gb|ADJ63315.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 155/161 (96%), Positives = 158/161 (98%) Query: 485 QAGQLALSTALNSLQAQQGEISNMNEKNAQNIAQLPALLNQISVRLADEMGAIQYQGELQ 544 QAGQLALS+AL SLQ QQGEI+NMNEKNAQNIAQLPALLNQISVRLADEMGAIQYQGELQ Sbjct: 389 QAGQLALSSALTSLQTQQGEIANMNEKNAQNIAQLPALLNQISVRLADEMGAIQYQGELQ 448 Query: 545 ATVAARLNELGNTIGENSSNMARDALSARQLQIDLAKHMAMQNDRVKNLGAIPQSLTSIT 604 ATVAARLNELGNTIGENSSNMARDALSARQLQIDLAKHMA QNDRVKNLGAIPQSLTSIT Sbjct: 449 ATVAARLNELGNTIGENSSNMARDALSARQLQIDLAKHMATQNDRVKNLGAIPQSLTSIT 508 Query: 605 EALMRQNINWQTVIDEMRTGRQTMVKDLRLELREAIREITA 645 EALMRQNINWQTVIDEMRTGRQTMVKDLRLE+REAIREITA Sbjct: 509 EALMRQNINWQTVIDEMRTGRQTMVKDLRLEMREAIREITA 549