BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2200.p         (320 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776933.1| periplasmic amino acid-binding protein [Herb...   421   e-116
emb|CBA28910.1| hypothetical protein Csp_A09500 [Curvibacter put...   199   4e-49
ref|ZP_05117039.1| hypothetical protein SADFL11_4927 [Labrenzia ...   145   1e-32
ref|YP_433609.1| amino acid ABC transporter periplasmic protein ...   133   3e-29
ref|YP_003809337.1| predicted extracellular solute-binding prote...   131   2e-28

>ref|YP_003776933.1| periplasmic amino acid-binding protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ65025.1| periplasmic amino acid-binding protein [Herbaspirillum seropedicae
           SmR1]
          Length = 265

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 199/254 (78%), Positives = 225/254 (88%)

Query: 57  MLAVLAAVTALSAPLTVHAAECSKVVISADSDYAPLHWYDGKRLTGASIEIATRALSALN 116
           +L+  A   A+       AAEC+++V+SADSDYAPLHWYDGK LTGASIEIATRAL ALN
Sbjct: 4   LLSAYALSLAVMIAPAAGAAECTRLVVSADSDYAPLHWYDGKHLTGASIEIATRALEALN 63

Query: 117 IPYEVRYVGPFHRVLKEAESGQVAMVSSLKNTPERQSYLAFASVPLFSNPIAVFVARDKR 176
           IP+EVRYVGPFHRVLK AESG+VAM++SLK TPERQ YLAF SVPLF NPIAVFVARD+R
Sbjct: 64  IPFEVRYVGPFHRVLKAAESGEVAMIASLKITPERQQYLAFTSVPLFVNPIAVFVARDRR 123

Query: 177 FAYGGWKDLIGKRGAVTLGNQFGGGFDEFLRDNLIIETAQKFYMNFSKLDSGRIDYLITG 236
           FAYGGWKDL+GKRGA+TLGNQFGGGFDEF+RDNLIIETAQK YMNF+KLDSGRIDYL+TG
Sbjct: 124 FAYGGWKDLVGKRGAITLGNQFGGGFDEFMRDNLIIETAQKTYMNFTKLDSGRIDYLLTG 183

Query: 237 YYNGVIYLNQNGLADRFMPLRPFVSESDNYIAMSRASPCVKLLPRINAQLEAMQKSGELR 296
           YY+G+IYLNQ    DRFMPLRPFVSE+DNY+A+S+ASPC+K L RINAQLE MQK GELR
Sbjct: 184 YYSGMIYLNQTQQQDRFMPLRPFVSETDNYLALSKASPCIKHLARINAQLETMQKRGELR 243

Query: 297 AVLQSFETDLRIDT 310
           AVLQ FETDLRI++
Sbjct: 244 AVLQKFETDLRIES 257


>emb|CBA28910.1| hypothetical protein Csp_A09500 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 286

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 94/226 (41%), Positives = 144/226 (63%)

Query: 76  AECSKVVISADSDYAPLHWYDGKRLTGASIEIATRALSALNIPYEVRYVGPFHRVLKEAE 135
           ++C+++V+++D  Y PLHWYDG+ L GASIEIA R L  L I +E+R VGPF RV+  AE
Sbjct: 47  SQCTRMVVTSDPAYPPLHWYDGETLQGASIEIAKRVLGDLKIDFEIRSVGPFPRVMALAE 106

Query: 136 SGQVAMVSSLKNTPERQSYLAFASVPLFSNPIAVFVARDKRFAYGGWKDLIGKRGAVTLG 195
            G+V MV +LK TPER+++L +       NP+A F ++D    Y    DLIG RGA+  G
Sbjct: 107 RGEVDMVVTLKKTPERETFLLYPKTIALQNPVAAFTSKDLPLVYRDKADLIGMRGAMARG 166

Query: 196 NQFGGGFDEFLRDNLIIETAQKFYMNFSKLDSGRIDYLITGYYNGVIYLNQNGLADRFMP 255
           N FG G DE++++ L ++   +   +FS +  GR DY ITGYY G+  + + G    F+ 
Sbjct: 167 NVFGNGLDEYIKEKLNVQEVNRPDASFSLMLLGRADYFITGYYTGMALILKRGDEANFVA 226

Query: 256 LRPFVSESDNYIAMSRASPCVKLLPRINAQLEAMQKSGELRAVLQS 301
             PF+ ++ NY+A++R   C   L +I+A+L  ++K+G L  +L++
Sbjct: 227 KEPFLVDTPNYLALTRNGKCADKLEQIDARLAILKKTGVLDEILRA 272


>ref|ZP_05117039.1| hypothetical protein SADFL11_4927 [Labrenzia alexandrii DFL-11]
 gb|EEE47638.1| hypothetical protein SADFL11_4927 [Labrenzia alexandrii DFL-11]
          Length = 270

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/246 (32%), Positives = 122/246 (49%), Gaps = 9/246 (3%)

Query: 78  CSKVVISADSDYAPLHWYDGKRLTGASIEIATRALSALNIPYEVRYVGPFHRVLKEAESG 137
           C++V  SA  DY P HW +G R+ GAS+++       + + ++  + GP+ RVLK AE+G
Sbjct: 25  CTRVTASAHPDYPPYHWREGGRIVGASVDLNKMIFQEIGVSFDAVFTGPWKRVLKTAENG 84

Query: 138 QVAMVSSLKNTPERQSYLAFASVPLFSNPIAVFVARDKRFAYGGWKDLIGKRGAVTLGNQ 197
            +  + SLK T ER ++L F   P F NP  VF   ++RF  GGW DL G+ GA   G++
Sbjct: 85  DIDFLMSLKKTDERSAFLDFTDTPAFENPFTVFTLENRRFPLGGWNDLKGRYGAKNAGDR 144

Query: 198 FGGGFDEFLRDNLIIETAQKFYMNFSKLDSGRIDYLITGYYNGVIYLNQNGLADRFMPLR 257
           +G  FD ++ + L +     F  N ++L  GRIDY+I G Y G          +  +P+ 
Sbjct: 145 YGEPFDAYVANVLKLSDNFSFQDNVNQLLVGRIDYIIHGRYVGQAQFGAIQGGEDIVPVD 204

Query: 258 PFVSESDNYIAMSRASPCVKLLPRINAQLEAMQKSGEL---------RAVLQSFETDLRI 308
             V     +   S  SPC  L  R++ +   +   G           R +LQS   +LR 
Sbjct: 205 WNVMNGFVHSGFSLNSPCRHLKGRVSKRYGELLADGTADRIISENIGRWILQSRNYELRK 264

Query: 309 DTANPD 314
              + D
Sbjct: 265 KVVDID 270


>ref|YP_433609.1| amino acid ABC transporter periplasmic protein [Hahella chejuensis
           KCTC 2396]
 gb|ABC29184.1| ABC-type amino acid transport/signal transduction systems,
           periplasmic component/domain [Hahella chejuensis KCTC
           2396]
          Length = 285

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 5/233 (2%)

Query: 73  VHAAECSKVVISADSDYAPLHWYDGK---RLTGASIEIATRALSALNIPYEVRYVGPFHR 129
           V A  C  + +++D +Y P+ W D +   R+ G +IEI   A++   +  E +Y GP+ R
Sbjct: 17  VWAKNCVSLTVTSDPNYPPISWQDKQNPHRIIGVAIEIVELAMADKGVKVESKYKGPWKR 76

Query: 130 VLKEAESGQVAMVSSLKNTPERQSYLAFASVPLFSNPIAVFVARDKRFAYGGWKDLIGKR 189
           VL   +S  V M+S L  + ER++ L F   P  S+P  +FV     F +  W+DL GK+
Sbjct: 77  VLASTDS--VDMISGLYISEERRALLHFVQPPFMSDPNVIFVKEGHGFPFKSWEDLKGKK 134

Query: 190 GAVTLGNQFGGGFDEFLRDNLIIETAQKFYMNFSKLDSGRIDYLITGYYNGVIYLNQNGL 249
           G   LG+ FG  FDEF + +L +E   +F   +    +GR+DY + G Y G+    +  L
Sbjct: 135 GGARLGDSFGVEFDEFAKQHLNLERVGQFEQLYGMTMAGRLDYFLYGLYPGISLAEELNL 194

Query: 250 ADRFMPLRPFVSESDNYIAMSRASPCVKLLPRINAQLEAMQKSGELRAVLQSF 302
             +   L   ++E   YIA S+ S C+     ++ +++   K G L  ++Q +
Sbjct: 195 NRQLEFLPTPITEEGIYIAFSKTSNCIGYADYLSEKIKQYSKEGLLGELIQKY 247


>ref|YP_003809337.1| predicted extracellular solute-binding protein [gamma
           proteobacterium HdN1]
 emb|CBL43670.1| predicted extracellular solute-binding protein [gamma
           proteobacterium HdN1]
          Length = 292

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 120/236 (50%)

Query: 66  ALSAPLTVHAAECSKVVISADSDYAPLHWYDGKRLTGASIEIATRALSALNIPYEVRYVG 125
           A SA   V A     VVIS    Y PL W  G  L GAS+++ T  L+   I  +    G
Sbjct: 44  AGSAVDAVAACRAGGVVISGGDTYPPLSWRRGDHLVGASVDMVTEILAGFGIHAKADEGG 103

Query: 126 PFHRVLKEAESGQVAMVSSLKNTPERQSYLAFASVPLFSNPIAVFVARDKRFAYGGWKDL 185
           P+ RVL  A  G+V ++  ++   E + +L +   P+  +   VF+ +   F+Y  W DL
Sbjct: 104 PWKRVLLRARDGEVDILLGVRKAREYEHFLVYLEPPITPSVQGVFMLKGHEFSYKDWSDL 163

Query: 186 IGKRGAVTLGNQFGGGFDEFLRDNLIIETAQKFYMNFSKLDSGRIDYLITGYYNGVIYLN 245
            GK G++TLG  F   FD F + +L ++  ++   NF KL+  R+DY++       +YL 
Sbjct: 164 EGKSGSITLGTTFDKKFDAFAKSHLELQPVRRIEQNFFKLEKRRVDYMLAPSQPTQLYLK 223

Query: 246 QNGLADRFMPLRPFVSESDNYIAMSRASPCVKLLPRINAQLEAMQKSGELRAVLQS 301
           + G  D+ +  +  +   + YIA+S+ SPC++L   I+  + A  +S      +++
Sbjct: 224 RFGYQDKIVAAQEPLMILEEYIAISKKSPCIQLKDEISRAMRAWIESDRFDEAMEA 279