BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2197.p (454 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775223.1| hypothetical protein Hsero_1805 [Herbaspiril... 669 0.0 ref|YP_001100204.1| hypothetical protein HEAR1930 [Herminiimonas... 518 e-144 ref|YP_001353079.1| hypothetical protein mma_1389 [Janthinobacte... 516 e-144 ref|YP_004040397.1| hypothetical protein MPQ_2008 [Methylovorus ... 127 3e-27 ref|YP_003051755.1| hypothetical protein Msip34_1986 [Methylovor... 122 2e-25 >ref|YP_003775223.1| hypothetical protein Hsero_1805 [Herbaspirillum seropedicae SmR1] gb|ADJ63315.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 357/370 (96%), Positives = 366/370 (98%) Query: 1 MKNLRQFYALAAIPTLLLLLGAFLFRGFVGHAIQINPFLNLFIIAVAVFGIALIFYNLYR 60 MKNLRQFYALAAIPTLLLLLGAFLFRGFV HAIQINPFLNLFIIAVAVFGIALI YNL+R Sbjct: 1 MKNLRQFYALAAIPTLLLLLGAFLFRGFVLHAIQINPFLNLFIIAVAVFGIALIGYNLWR 60 Query: 61 VNWEYDKLIQFYDRTKAGESMESLVKAPEFEGTEIGQVLVSVASTKGRLTSRIEQETIEG 120 VNWE+ KL+QFY+RTKAGESMESLVKAPEFEGTEIGQVLVSVASTKGRLTSRIEQETIEG Sbjct: 61 VNWEHAKLMQFYERTKAGESMESLVKAPEFEGTEIGQVLVSVASTKGRLTSRIEQETIEG 120 Query: 121 SLHDLRAHLEAKTEFPQFLTGFMIALGLLGTFIGLLETLVSTAALIDGFGKASTAGDMDA 180 SLHDLRAHL+AKTEFPQFLTGFMIALGLLGTFIGLLETLVSTAALIDGFGKAS+ GDMDA Sbjct: 121 SLHDLRAHLDAKTEFPQFLTGFMIALGLLGTFIGLLETLVSTAALIDGFGKASSGGDMDA 180 Query: 181 SFMHLVADLQKPLASMGTAFSASMFGLIGSLALGLTLTPLRAASKKLVTRARECISDMVQ 240 SFMHLVADLQKPLASMGTAFSASMFGLIGSLALGLTLTPLRAASKKLV+RARECISDMVQ Sbjct: 181 SFMHLVADLQKPLASMGTAFSASMFGLIGSLALGLTLTPLRAASKKLVSRARECISDMVQ 240 Query: 241 HVVHDMSGPAATQRQGVSETFLAEFLQDLMVLQRESIMAARNSSEASLQAGIKLEGLNDR 300 HVVHDMSGPAATQRQGVSE+FLAEFLQDLMVLQRESIMAARNSSEASLQAGIKLEGLNDR Sbjct: 241 HVVHDMSGPAATQRQGVSESFLAEFLQDLMVLQRESIMAARNSSEASLQAGIKLEGLNDR 300 Query: 301 LNNIVQLFNDSMEESRSLRQLVAFGPRMHETAQQTLEEIRNVGQLINTKITSARDLSDSL 360 LNNIVQLFNDSMEESRSLRQLVAFGPRMHETAQQTLEEIRNVGQLINTKITSARDLSDSL Sbjct: 301 LNNIVQLFNDSMEESRSLRQLVAFGPRMHETAQQTLEEIRNVGQLINTKITSARDLSDSL 360 Query: 361 SSLEERLSVS 370 SSLEERLSV+ Sbjct: 361 SSLEERLSVN 370 >ref|YP_001100204.1| hypothetical protein HEAR1930 [Herminiimonas arsenicoxydans] emb|CAL62080.1| Hypothetical protein, putative membrane proteine [Herminiimonas arsenicoxydans] Length = 554 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 261/370 (70%), Positives = 311/370 (84%) Query: 1 MKNLRQFYALAAIPTLLLLLGAFLFRGFVGHAIQINPFLNLFIIAVAVFGIALIFYNLYR 60 MK LR++Y LA IP+L+LL G LF+ FV HA+ INP LNLFII VAVFG+ALI Y++Y+ Sbjct: 1 MKTLRKYYVLAMIPSLVLLTGGILFKDFVLHAVHINPILNLFIIGVAVFGVALIMYDIYK 60 Query: 61 VNWEYDKLIQFYDRTKAGESMESLVKAPEFEGTEIGQVLVSVASTKGRLTSRIEQETIEG 120 VNWEY+KL FY R AGE +E+LVK P F GTEI +VLVSVA+TKGRLT+RIEQETIE Sbjct: 61 VNWEYNKLQMFYARATAGELLENLVKDPTFAGTEIAKVLVSVANTKGRLTTRIEQETIER 120 Query: 121 SLHDLRAHLEAKTEFPQFLTGFMIALGLLGTFIGLLETLVSTAALIDGFGKASTAGDMDA 180 SL +L HLEA+ EFPQ+LTGFMIALGLLGTFIGLLETLVSTA LI+GFG+AS DMDA Sbjct: 121 SLAELHTHLEARMEFPQYLTGFMIALGLLGTFIGLLETLVSTADLINGFGQASQGSDMDA 180 Query: 181 SFMHLVADLQKPLASMGTAFSASMFGLIGSLALGLTLTPLRAASKKLVTRARECISDMVQ 240 SF HLVADL KPLASMGTAFSASMFGLIGSL LGLTL LR A K+LV ARECIS MV+ Sbjct: 181 SFAHLVADLNKPLASMGTAFSASMFGLIGSLTLGLTLVCLRGAGKRLVVAARECISVMVE 240 Query: 241 HVVHDMSGPAATQRQGVSETFLAEFLQDLMVLQRESIMAARNSSEASLQAGIKLEGLNDR 300 HVVH+MSGP A+QRQG+SE+FL EFL DLMVLQRES++ +RNSS+ASLQAG+KLE +N+R Sbjct: 241 HVVHEMSGPGASQRQGISESFLTEFLHDLMVLQRESVLTSRNSSDASLQAGMKLEAMNER 300 Query: 301 LNNIVQLFNDSMEESRSLRQLVAFGPRMHETAQQTLEEIRNVGQLINTKITSARDLSDSL 360 L+ + +LF +S++ES+++RQLV FGPRMHE QQTLEEIR +GQ+IN K+ S +D++ SL Sbjct: 301 LSTVARLFQESIDESKNIRQLVTFGPRMHEVGQQTLEEIRGLGQMINQKLESTQDITQSL 360 Query: 361 SSLEERLSVS 370 S L ERLSV+ Sbjct: 361 SLLNERLSVN 370 >ref|YP_001353079.1| hypothetical protein mma_1389 [Janthinobacterium sp. Marseille] gb|ABR90868.1| Hypothetical protein mma_1389 [Janthinobacterium sp. Marseille] Length = 576 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 260/370 (70%), Positives = 310/370 (83%) Query: 1 MKNLRQFYALAAIPTLLLLLGAFLFRGFVGHAIQINPFLNLFIIAVAVFGIALIFYNLYR 60 MK LR++Y LA IP+L+LL G LF+ FV HA+ INP LNLFII VAVFG+ALI Y++Y+ Sbjct: 23 MKTLRKYYVLAMIPSLVLLAGGILFKDFVLHAVHINPVLNLFIIGVAVFGVALIMYDIYK 82 Query: 61 VNWEYDKLIQFYDRTKAGESMESLVKAPEFEGTEIGQVLVSVASTKGRLTSRIEQETIEG 120 V+WEY+KL FY R AGE +E LVK P F GTEI +VLVSVA+TKGRLT+RIEQETIE Sbjct: 83 VSWEYNKLKLFYARASAGELLEDLVKDPTFAGTEIAKVLVSVANTKGRLTTRIEQETIER 142 Query: 121 SLHDLRAHLEAKTEFPQFLTGFMIALGLLGTFIGLLETLVSTAALIDGFGKASTAGDMDA 180 SL +L HLEA+ EFPQ+LTGFMIALGLLGTFIGLLETLVSTA LI+GFG+AS DMDA Sbjct: 143 SLAELHTHLEARMEFPQYLTGFMIALGLLGTFIGLLETLVSTADLINGFGQASQGSDMDA 202 Query: 181 SFMHLVADLQKPLASMGTAFSASMFGLIGSLALGLTLTPLRAASKKLVTRARECISDMVQ 240 SF HLVADL KPLASMGTAFSASMFGLIGSL LGLTL LR A K+LV ARECIS MV+ Sbjct: 203 SFAHLVADLNKPLASMGTAFSASMFGLIGSLTLGLTLVCLRGAGKRLVVAARECISVMVE 262 Query: 241 HVVHDMSGPAATQRQGVSETFLAEFLQDLMVLQRESIMAARNSSEASLQAGIKLEGLNDR 300 HVVH+MSGP A+QRQG+SE+FL EFL DLMVLQRES++ +RNSS+ASLQAG+KLE +N+R Sbjct: 263 HVVHEMSGPGASQRQGISESFLTEFLHDLMVLQRESVLTSRNSSDASLQAGMKLEAMNER 322 Query: 301 LNNIVQLFNDSMEESRSLRQLVAFGPRMHETAQQTLEEIRNVGQLINTKITSARDLSDSL 360 L+ + +LF +S++ES+++RQLV FGPRMHE QQTLEEIR +GQ+IN K+ S +D++ SL Sbjct: 323 LSTVARLFQESIDESKNIRQLVTFGPRMHEVGQQTLEEIRGLGQMINQKLESTQDITQSL 382 Query: 361 SSLEERLSVS 370 S L ERLSV+ Sbjct: 383 SLLNERLSVN 392 >ref|YP_004040397.1| hypothetical protein MPQ_2008 [Methylovorus sp. MP688] gb|ADQ85161.1| conserved hypothetical protein [Methylovorus sp. MP688] Length = 575 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 112/364 (30%), Positives = 170/364 (46%), Gaps = 18/364 (4%) Query: 5 RQFYALAAIPTLLLLLGAFLFRGFVGHAIQINPFLNLFIIAVAVFGIALIFYNLYRVNWE 64 R+ L +P + + GA F FV H+I N +N IIA A FG+ L+ + + E Sbjct: 16 RKHLILVLLPLAMTMAGAVTFHAFVIHSILTNIAINSIIIATAAFGVMLMLLRVRDIRSE 75 Query: 65 YDKLIQFYDRTKAGESM-ESLVKAPEFEGTEIGQVLVSVASTKGRLTSRIEQETIEGSLH 123 + F A +S +SLV G +L R S IEQ ++ +L Sbjct: 76 WQIFESFVSSRSAEQSAGKSLVS---------GLILRLQQIRLSRHASVIEQGQVQETLD 126 Query: 124 DLRAHLEAKTEFPQFLTGFMIALGLLGTFIGLLETLVSTAALIDGFGKASTAGDMDASFM 183 ++ L+++ E Q++ G MIALGLLGTFIGLLETL++ LI GF KA T+ ++D + + Sbjct: 127 HMQEVLDSRQEAAQYVVGLMIALGLLGTFIGLLETLIAVGDLIGGFAKADTSQNIDQALV 186 Query: 184 HLVADLQKPLASMGTAFSASMFGLIGSLALGLTLTPLRAASKKLVTRARECISDMVQHVV 243 L+ LQ PL +MGTAFSASMFGL+ SL LG+ L +RA + +R M+ Sbjct: 187 QLIGTLQYPLTAMGTAFSASMFGLLCSLMLGIMLLSVRAFQADFMQFSRAMTEGMIAEAT 246 Query: 244 HDMSGPAATQRQGVSETFLAEFLQDLMVLQRESIMAARNSSEASLQAGIKLEGLNDRLNN 303 PAA+ L + +L L + R + +++ L + Sbjct: 247 -----PAASTEMEADHALLLSRMAELQRLHQALQGEVRALTRQGADNEMRISQLLAGMER 301 Query: 304 IVQLFNDSMEESRSLRQLVAFGPRMHETAQQTLEEIRNVGQLINTKITSARDLSDSLSSL 363 V + S + + S+ +A P + Q T +V QL T + + R SL Sbjct: 302 FVSINEKSAQNAESMNAHLASLPAL---IQLTDRMGHSVEQLAGTVVHAQRQSDLQQQSL 358 Query: 364 EERL 367 + L Sbjct: 359 AQTL 362 >ref|YP_003051755.1| hypothetical protein Msip34_1986 [Methylovorus glucosetrophus SIP3-4] gb|ACT51228.1| hypothetical protein Msip34_1986 [Methylovorus glucosetrophus SIP3-4] Length = 506 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 110/355 (30%), Positives = 165/355 (46%), Gaps = 24/355 (6%) Query: 17 LLLLGAFLFRGFVGHAIQINPFLNLFIIAVAVFGIALIFYNLYRVNWEYDKLIQFY---- 72 + + GA F FV H+I N +N IIA A FG+ L+ + E+ F Sbjct: 1 MTMAGAVTFHAFVIHSILTNIAINSIIIATAAFGVMLMLLRDRDIRSEWQIFETFVSSGS 60 Query: 73 DRTKAGESMESLVKAPEFEGTEIGQVLVSVASTKGRLTSRIEQETIEGSLHDLRAHLEAK 132 D AG+S+ S G +L R S IEQ ++ +L ++ L+++ Sbjct: 61 DEPSAGKSLVS------------GLILRLQQIRLSRHASVIEQGQVQETLDHMQEVLDSR 108 Query: 133 TEFPQFLTGFMIALGLLGTFIGLLETLVSTAALIDGFGKASTAGDMDASFMHLVADLQKP 192 E Q++ G MIALGLLGTFIGLLETL++ LI GF KA T+ ++D + + L+A LQ P Sbjct: 109 QEAAQYVVGLMIALGLLGTFIGLLETLIAVGDLIGGFAKADTSQNIDQALVQLIATLQYP 168 Query: 193 LASMGTAFSASMFGLIGSLALGLTLTPLRAASKKLVTRARECISDMVQHVVHDMSGPAAT 252 L +MGTAFSASMFGL+ SL LG+ L +RA + +R M+ PAA+ Sbjct: 169 LTAMGTAFSASMFGLLCSLMLGIMLLSVRAFQADFMQFSRAMTEGMIAEAT-----PAAS 223 Query: 253 QRQGVSETFLAEFLQDLMVLQRESIMAARNSSEASLQAGIKLEGLNDRLNNIVQLFNDSM 312 L + +L L + R + +++ L + V + S Sbjct: 224 TEMEADHALLLSRMAELQRLHQALQGEVRALTRQGADNEMRISQLLAGMERFVSINEKSA 283 Query: 313 EESRSLRQLVAFGPRMHETAQQTLEEIRNVGQLINTKITSARDLSDSLSSLEERL 367 + + S+ +A P + Q T +V QL T + + R SL + L Sbjct: 284 QNAESMNAHLASLPAL---IQLTDRMGHSVEQLAGTVVHAQRQSDLQQQSLAQTL 335