BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2194.p (546 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775220.1| outer membrane protein [Herbaspirillum serop... 785 0.0 ref|YP_001100207.1| putative signal peptide [Herminiimonas arsen... 476 e-132 ref|YP_001353076.1| hypothetical protein mma_1386 [Janthinobacte... 470 e-130 ref|YP_003051758.1| outer membrane efflux protein [Methylovorus ... 177 4e-42 ref|YP_004040400.1| outer membrane efflux protein [Methylovorus ... 175 2e-41 >ref|YP_003775220.1| outer membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63312.1| outer membrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 785 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 434/540 (80%), Positives = 484/540 (89%), Gaps = 3/540 (0%) Query: 4 LKSKRFILGVSLGLAAHSAPQAADKPPADAVIMQTTPAAPATFDNKLDAPPQIRLGADPA 63 +KSKRF++GVSLGLA H AAD PPA T LD+PPQIRLGADP Sbjct: 6 VKSKRFLIGVSLGLATHQMVSAADTPPAFTEPPAPTQVVSPASAAPLDSPPQIRLGADPG 65 Query: 64 GPSATDYRLPGLPADTPPPSAQDEILLLLRQSDPDFSGNQIVLPQISIVTEGETVPDLSL 123 G + D++LP LP ++ S QDEIL LLRQ+DP+FSGN IVLPQIS+V EG V DL+L Sbjct: 66 GAAVGDFKLPALPGESAMGSPQDEILQLLRQADPEFSGNAIVLPQISVVPEGAPVNDLTL 125 Query: 124 RSVLDLALNNSYSYAATSAQAEQARYASKATAGQLGPTLDLRAQKGNEYSSPSSVIDPNT 183 VLDLA+NNSYSYAATSAQA+QARYA++ATAGQ+GPTLD+RAQKG EYSSPSSVIDPNT Sbjct: 126 SQVLDLAVNNSYSYAATSAQADQARYAARATAGQMGPTLDVRAQKGQEYSSPSSVIDPNT 185 Query: 184 GLIQRASYHKRWDVTLIGRQPIFAPGSYYDYRKSSSLADAADLRRDDARETLYYNAIKAY 243 GL++RAS HKRWDVT+IGRQP+FAPGSY+DYRK+SSLADAADLRR+DARETLYY AIK+Y Sbjct: 186 GLVRRASDHKRWDVTVIGRQPVFAPGSYFDYRKASSLADAADLRREDARETLYYTAIKSY 245 Query: 244 YDVMRAYATLSFSRSYAQRMGALLDYMSKRLEGGGASRIDFERVRGRSLTAQSAVAEAEG 303 YDVMRAYATLSFSRSYAQRM ALL+YM KRLEGGGASRIDFERVRGRSLTAQ+AVAEAEG Sbjct: 246 YDVMRAYATLSFSRSYAQRMNALLEYMRKRLEGGGASRIDFERVRGRSLTAQAAVAEAEG 305 Query: 304 ALESAMVSLNQITGRKIEQIEVPDHMMPTVPDTSKLALQDVYETNPGVRAARRDVDAANQ 363 ALESAMVSLNQITGRKIEQ+EVPDHMMP VPDTSKLAL+D+Y+TNPGVRAAR+DV+AANQ Sbjct: 306 ALESAMVSLNQITGRKIEQLEVPDHMMPPVPDTSKLALKDIYDTNPGVRAARQDVEAANQ 365 Query: 364 ELKSARAKFSPTLALEWTQTKTRGAGGAIDTTD---NTLQLTTDRRLMMVVSMNLLNGGS 420 ELKSARAKFSPTLA+E+TQTKTRGAGGAIDTT+ N+LQL+TDRRLM+V++MNLLNGGS Sbjct: 366 ELKSARAKFSPTLAVEFTQTKTRGAGGAIDTTNPTANSLQLSTDRRLMLVMTMNLLNGGS 425 Query: 421 DMYYSKQAGAKYVEKSNTALDLERKLREQIEINYRTLGAVRKRMEISRQAYLTNANVADV 480 D+YYSKQAGAKYVEKSNT LDLERKLREQIEINYRTLGAVRKRM+ISRQAYLTNANVADV Sbjct: 426 DVYYSKQAGAKYVEKSNTVLDLERKLREQIEINYRTLGAVRKRMDISRQAYLTNANVADV 485 Query: 481 FLEQLSTGSKQLLDVLDAYQQAYQARMDFANLLFQQADISYQILRNTGRASALETLPTRA 540 FL+QLS GSKQL+DVLDAYQQAYQAR+DF+NLLFQQADISYQILRNTGRASA PT+A Sbjct: 486 FLDQLSAGSKQLIDVLDAYQQAYQARVDFSNLLFQQADISYQILRNTGRASAAVLTPTQA 545 >ref|YP_001100207.1| putative signal peptide [Herminiimonas arsenicoxydans] emb|CAL62083.1| Conserved hypothetical protein, putative outer membrane efflux protein [Herminiimonas arsenicoxydans] Length = 553 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 301/548 (54%), Positives = 385/548 (70%), Gaps = 25/548 (4%) Query: 2 RVLKSKRFILGVSLGLAAHSA-------------PQAADKPPADAVIMQTTPAAPATFDN 48 R++ S F++ L LAA SA P A ++P + QT P+ Sbjct: 8 RLISSIPFLIASQLALAAPSASDALAQSNLFRSRPGAGEQPFTQDIPRQT--PTPSVELA 65 Query: 49 KLDAPPQIRLGADPAGPSATDYRLPGLPADT--PPPSAQDEILLLLRQSDPDFSGNQIVL 106 + PP +RL +D + + ++ S DEIL LLRQSD FS + L Sbjct: 66 PVATPPALRLPSDVPKRTKNENTNAAKASENVQADGSRDDEILQLLRQSDKTFSSPAVPL 125 Query: 107 PQ-ISIVTEGETVPDLSLRSVLDLALNNSYSYAATSAQAEQARYASKATAGQLGPTLDLR 165 P I+ +++G LSL L L NSYSYAA SA AE A Y A GQLGPTLD+R Sbjct: 126 PDGIAALSDGPLQNMLSLEEALARTLQNSYSYAAASAVAEGAVYGKNAALGQLGPTLDVR 185 Query: 166 AQKGNEYSSPSSVIDPNTGLIQRASYHKRWDVTLIGRQPIFAPGSYYDYRKSSSLADAAD 225 AQ+G EYS+P+S+I+ NTG + H RWD ++I RQP+FAP SY++YRK +SLA+AAD Sbjct: 186 AQRGREYSAPASIINQNTGRALSSDTHIRWDNSVILRQPLFAPASYFEYRKQASLANAAD 245 Query: 226 LRRDDARETLYYNAIKAYYDVMRAYATLSFSRSYAQRMGALLDYMSKRLEGGGASRIDFE 285 LR++DARE LYY IKAYYD++R+Y L+F+RSY +RM L +YM+KRL+GGGAS++DFE Sbjct: 246 LRKEDAREALYYTTIKAYYDLLRSYVGLTFARSYTERMDTLQEYMNKRLQGGGASKVDFE 305 Query: 286 RVRGRSLTAQSAVAEAEGALESAMVSLNQITGRKIEQIEVPDHMMPTVPDTSKLALQDVY 345 RVRGR+LTA+S + EAEG LESAMV+L Q+TG + +Q+ +P MMP VP +S+LAL+ +Y Sbjct: 306 RVRGRALTARSTMIEAEGVLESAMVTLAQLTGVRSQQLGIPSKMMPIVPTSSRLALEQIY 365 Query: 346 ETNPGVRAARRDVDAANQELKSARAKFSPTLALEWTQTKTRGAGGAIDTTDNTLQLTTDR 405 E NP VRAAR D AAN+ELKSAR++FSP ++E +Q +T AGG +LTTDR Sbjct: 366 ENNPAVRAARLDAAAANEELKSARSRFSPNFSIEMSQARTDNAGG-------DGRLTTDR 418 Query: 406 RLMMVVSMNLLNGGSDMYYSKQAGAKYVEKSNTALDLERKLREQIEINYRTLGAVRKRME 465 R M V++MNLLNGGSD YY KQ G+KYVEKSNTA D+ERKL+EQIEINYRTL AV+KR+ Sbjct: 419 RYMFVMNMNLLNGGSDYYYQKQIGSKYVEKSNTASDIERKLKEQIEINYRTLDAVKKRIT 478 Query: 466 ISRQAYLTNANVADVFLEQLSTGSKQLLDVLDAYQQAYQARMDFANLLFQQADISYQILR 525 I+RQAY TNA+VADVFLEQL+ G+KQLLDVLDAYQQAY +R++ + LLF QADISYQILR Sbjct: 479 IARQAYQTNADVADVFLEQLAIGNKQLLDVLDAYQQAYLSRVELSQLLFLQADISYQILR 538 Query: 526 NTGRASAL 533 NTGRAS+ Sbjct: 539 NTGRASSF 546 >ref|YP_001353076.1| hypothetical protein mma_1386 [Janthinobacterium sp. Marseille] gb|ABR90279.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 553 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 292/516 (56%), Positives = 371/516 (71%), Gaps = 12/516 (2%) Query: 21 SAPQAADKPPADAVIMQTTPAAPATFDNKLDAPPQIRLGADPAGPSATDYRLPGLPADT- 79 S P + ++P + QT P + PP +RL +D + D ++ Sbjct: 40 SRPGSGEQPFTQDIPRQT--PTPTEELAPIVTPPVLRLPSDVPKRTKADNSNAAKASENV 97 Query: 80 -PPPSAQDEILLLLRQSDPDFSGNQIVLPQ-ISIVTEGETVPDLSLRSVLDLALNNSYSY 137 S DEIL LLRQSD FS + LP I+ +++G LSL L L NSYSY Sbjct: 98 QADGSRDDEILQLLRQSDKAFSSPAVPLPDGIAALSDGPLQNMLSLEEALARTLQNSYSY 157 Query: 138 AATSAQAEQARYASKATAGQLGPTLDLRAQKGNEYSSPSSVIDPNTGLIQRASYHKRWDV 197 AA SA AE A Y A GQLGPTLD+RAQ+G EYS+P+S+I+P TG + H RWD Sbjct: 158 AAASAVAEGAVYGKNAALGQLGPTLDVRAQRGREYSAPASIINPATGRALSSDTHIRWDN 217 Query: 198 TLIGRQPIFAPGSYYDYRKSSSLADAADLRRDDARETLYYNAIKAYYDVMRAYATLSFSR 257 ++I RQP+FAP SY++YRK +SLA+AADLR++DARE LYY IKA YD++R+Y L+F+R Sbjct: 218 SVILRQPLFAPASYFEYRKQASLANAADLRKEDAREALYYTTIKADYDLLRSYVGLTFAR 277 Query: 258 SYAQRMGALLDYMSKRLEGGGASRIDFERVRGRSLTAQSAVAEAEGALESAMVSLNQITG 317 SY +RM L DYM+KRL+GGGAS++DFERVRGR+LTA+S + EAEG LESAMV+L Q+TG Sbjct: 278 SYTERMDTLQDYMNKRLQGGGASKVDFERVRGRALTARSTMIEAEGVLESAMVTLAQLTG 337 Query: 318 RKIEQIEVPDHMMPTVPDTSKLALQDVYETNPGVRAARRDVDAANQELKSARAKFSPTLA 377 + +Q+ +P MMP VP +S+LAL+ +YE NP VRAAR+D AAN+ELKSAR++FSP + Sbjct: 338 VRSQQLGIPSKMMPIVPTSSRLALEQIYENNPAVRAARQDAAAANEELKSARSRFSPNFS 397 Query: 378 LEWTQTKTRGAGGAIDTTDNTLQLTTDRRLMMVVSMNLLNGGSDMYYSKQAGAKYVEKSN 437 +E +Q +T AGG +LTTDRR M+V++MNLLNGGSD YY KQ G+KYVEK N Sbjct: 398 VEVSQARTDNAGG-------DGRLTTDRRYMLVMNMNLLNGGSDYYYQKQIGSKYVEKVN 450 Query: 438 TALDLERKLREQIEINYRTLGAVRKRMEISRQAYLTNANVADVFLEQLSTGSKQLLDVLD 497 TA D+ERKL+EQIEINYRTL AVRKR+ I+RQAY NA+VADVFLEQL+ G+KQLLDVLD Sbjct: 451 TASDIERKLKEQIEINYRTLDAVRKRITIARQAYQANADVADVFLEQLAVGNKQLLDVLD 510 Query: 498 AYQQAYQARMDFANLLFQQADISYQILRNTGRASAL 533 AYQQAY +R++ + LLF QADISYQILRNTGRAS+ Sbjct: 511 AYQQAYLSRVELSQLLFLQADISYQILRNTGRASSF 546 >ref|YP_003051758.1| outer membrane efflux protein [Methylovorus glucosetrophus SIP3-4] gb|ACT51231.1| outer membrane efflux protein [Methylovorus glucosetrophus SIP3-4] Length = 539 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 130/422 (30%), Positives = 211/422 (50%), Gaps = 9/422 (2%) Query: 116 ETVPDLSLRSVLDLALNNSYSYAATSAQAEQARYASKATAGQLGPTLDLRAQKGNEYSSP 175 E V L+L A +SYS A+ ++ A ++A + P+++LR +G E S+P Sbjct: 122 EQVDSLTLEDARRKAHESSYSLGASRSKTSAAANLARAAYSGVLPSVNLRTARGRENSTP 181 Query: 176 SSVIDPNTGLIQRASYHKRWDVTLIGRQPIFAPGSYYDYRKSSSLADAADLRRDDARETL 235 SS +D TG S R +V + QP+ + + R+++++ A++ R + Sbjct: 182 SSRLDDTTGEALAESTQIRKEVYAVISQPLLDLSAVTEIRRTAAVRKASEFDESGVRGDV 241 Query: 236 YYNAIKAYYDVMRAYATLSFSRSYAQRMGALLDYMSKRLEGGGASRIDFERVRGRSLTAQ 295 Y++ A++ + A +L + + QR+ L +MS R E GGAS D ER+ R L+A+ Sbjct: 242 TYDSSAAFFSAVEAELSLKLALAQQQRLERLGIWMSARAEAGGASGADRERINARVLSAK 301 Query: 296 SAVAEAEGALESAMVSLNQITGRKIEQIEVPDHMMPTVPDTSKLALQDVYETNPGVRAAR 355 S V +A A ++L+Q+TG Q+ +P + + AL V NP V AR Sbjct: 302 SNVEDAISQANQAYITLSQLTGTLPRQLVLPSLGSYEPVGSLEDALAMVSHANPAVLTAR 361 Query: 356 RDVDAANQELKSARAKFSPTLALEWTQTKTRGAGGAIDTTDNTLQLTTDRRLMMVVSMNL 415 + +A+ QE A+F+PTL E + T AGG + D R M+V++M+L Sbjct: 362 ANEEASKQERLGYWARFTPTLKFELSTTNIDNAGG-------VMGWRKDERAMLVLNMSL 414 Query: 416 LNGGSDMYYSKQAGAKYVEKSNTALDLERKLREQIEINYRTLGAVRKRMEISRQAYLTNA 475 GG D + + + K + + LD ER R ++I Y L + R++++ + A Sbjct: 415 FAGGGDYFKQRASHNKEEQYAFERLDSERTARRSLQIAYSGLSSARQKIKSLTKQAQAQA 474 Query: 476 NVADVFLEQLSTGSKQLLDVLDAYQQAYQARMDFANLLFQQADISYQILRNTGRASALET 535 V + F QL+ S+ LLDV DAYQQ YQ++++ Q + QILR TGR T Sbjct: 475 KVVEAFDAQLAITSRNLLDVFDAYQQYYQSQLELVRTSVQAILLEQQILRVTGRLG--NT 532 Query: 536 LP 537 LP Sbjct: 533 LP 534 >ref|YP_004040400.1| outer membrane efflux protein [Methylovorus sp. MP688] gb|ADQ85164.1| outer membrane efflux protein [Methylovorus sp. MP688] Length = 491 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 130/422 (30%), Positives = 211/422 (50%), Gaps = 9/422 (2%) Query: 116 ETVPDLSLRSVLDLALNNSYSYAATSAQAEQARYASKATAGQLGPTLDLRAQKGNEYSSP 175 E V L+L A +SYS A+ ++ A ++A + P+++LR +G E S+P Sbjct: 74 EQVDSLTLEDARRKAHESSYSLGASRSKTSAAANLARAAYSGVLPSVNLRTARGRENSTP 133 Query: 176 SSVIDPNTGLIQRASYHKRWDVTLIGRQPIFAPGSYYDYRKSSSLADAADLRRDDARETL 235 SS +D TG S R +V + QP+ + + R+++++ A++ R + Sbjct: 134 SSRLDDTTGEALAESTQIRKEVYAVISQPLLDLSAVTEIRRTAAVRKASEFDESGVRGDV 193 Query: 236 YYNAIKAYYDVMRAYATLSFSRSYAQRMGALLDYMSKRLEGGGASRIDFERVRGRSLTAQ 295 Y++ A++ + A +L + + QR+ L +MS R E GGAS D ER+ R L+A+ Sbjct: 194 TYDSSAAFFSAVEAELSLKLALAQQQRLERLGIWMSARAEAGGASGADRERINARVLSAK 253 Query: 296 SAVAEAEGALESAMVSLNQITGRKIEQIEVPDHMMPTVPDTSKLALQDVYETNPGVRAAR 355 S V +A A ++L+Q+TG Q+ +P + + AL V NP V AR Sbjct: 254 SNVEDAISQANQAYITLSQLTGTLPRQLVLPSLGSYEPVGSLEDALAMVSHANPAVLTAR 313 Query: 356 RDVDAANQELKSARAKFSPTLALEWTQTKTRGAGGAIDTTDNTLQLTTDRRLMMVVSMNL 415 + +A+ QE A+F+PTL E + T AGG + D R M+V++M+L Sbjct: 314 ANEEASKQERLGYWARFTPTLKFELSTTNIDNAGG-------VMGWRKDERAMLVLNMSL 366 Query: 416 LNGGSDMYYSKQAGAKYVEKSNTALDLERKLREQIEINYRTLGAVRKRMEISRQAYLTNA 475 GG D + + + K + + LD ER R ++I Y L + R++++ + A Sbjct: 367 FAGGGDYFKQRASHNKEEQYAFERLDSERTARRSLQIAYSGLSSARQKIKSLTKQAQAQA 426 Query: 476 NVADVFLEQLSTGSKQLLDVLDAYQQAYQARMDFANLLFQQADISYQILRNTGRASALET 535 V + F QL+ S+ LLDV DAYQQ YQ++++ Q + QILR TGR T Sbjct: 427 KVVEAFDAQLAITSRNLLDVFDAYQQYYQSQLELVRTSVQAILLEQQILRVTGRLG--NT 484 Query: 536 LP 537 LP Sbjct: 485 LP 486