BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2188.p (148 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775215.1| hypothetical protein Hsero_1797 [Herbaspiril... 204 5e-51 ref|YP_004753939.1| hypothetical protein CFU_3292 [Collimonas fu... 176 1e-42 ref|YP_004620494.1| hypothetical protein Rta_33620 [Ramlibacter ... 129 1e-28 ref|YP_798003.1| hypothetical protein LBL_1618 [Leptospira borgp... 124 6e-27 ref|YP_548122.1| hypothetical protein Bpro_1273 [Polaromonas sp.... 122 3e-26 >ref|YP_003775215.1| hypothetical protein Hsero_1797 [Herbaspirillum seropedicae SmR1] gb|ADJ63307.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 148 Score = 204 bits (518), Expect = 5e-51, Method: Composition-based stats. Identities = 124/148 (83%), Positives = 136/148 (91%) Query: 1 MDSTVSPRRIDVLLARYAESHRHPMNELIHCICVPAIVFSLLGLCWIVSPAVALLVAAAT 60 M S+ S R +DVLLARYA+SHRHPMNE IHCICVPAIV SLLGLCW +SPAVAL+VAAA Sbjct: 1 MHSSRSERPVDVLLARYAQSHRHPMNERIHCICVPAIVLSLLGLCWSLSPAVALVVAAAA 60 Query: 61 LAWYLRLSPPFAVGMLAMSAVMLVLLARLPLGAVLPVSATVFVLAWIGQFIGHRIEGKKP 120 LA+YLRLSPPFAVGMLAM+A+MLV LARLP GAVLPVSA +FVLAW+GQFIGHRIEG+KP Sbjct: 61 LAYYLRLSPPFAVGMLAMAALMLVFLARLPAGAVLPVSAAIFVLAWVGQFIGHRIEGRKP 120 Query: 121 SFFEDLRFLLVGPLFVLAFLYRRWNIAY 148 SFFEDLRFLL+GPLFVLAFLYRRW IAY Sbjct: 121 SFFEDLRFLLIGPLFVLAFLYRRWRIAY 148 >ref|YP_004753939.1| hypothetical protein CFU_3292 [Collimonas fungivorans Ter331] gb|AEK63116.1| protein of unknown function DUF962 [Collimonas fungivorans Ter331] Length = 173 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 96/141 (68%), Positives = 115/141 (81%) Query: 8 RRIDVLLARYAESHRHPMNELIHCICVPAIVFSLLGLCWIVSPAVALLVAAATLAWYLRL 67 R ID LLA+Y+ESH +P+NE+IH ICVP IVF+LLGL W++ PAVAL A++ +Y L Sbjct: 33 RSIDALLAKYSESHLNPVNEVIHFICVPVIVFTLLGLLWVIHPAVALAAVLASMLYYFSL 92 Query: 68 SPPFAVGMLAMSAVMLVLLARLPLGAVLPVSATVFVLAWIGQFIGHRIEGKKPSFFEDLR 127 S PFA+GML MS ML LL LP G VLP+S +VFV+AWIGQF+GH+IEGKKPSFFEDLR Sbjct: 93 SVPFAIGMLLMSGAMLALLYVLPPGLVLPLSVSVFVIAWIGQFVGHKIEGKKPSFFEDLR 152 Query: 128 FLLVGPLFVLAFLYRRWNIAY 148 FLL+GPLFVL FLYRR +IAY Sbjct: 153 FLLIGPLFVLGFLYRRLHIAY 173 >ref|YP_004620494.1| hypothetical protein Rta_33620 [Ramlibacter tataouinensis TTB310] gb|AEG94475.1| conserved hypothetical protein [Ramlibacter tataouinensis TTB310] Length = 156 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 77/143 (53%), Positives = 100/143 (69%), Gaps = 1/143 (0%) Query: 6 SPRRIDVLLARYAESHRHPMNELIHCICVPAIVFSLLGLCWIVSPAVALLVAAATLAWYL 65 S RR+D LLA YAESHRHP NE IH + +P I+ SL+GL + P VA AA+L +Y Sbjct: 15 SARRVDRLLAHYAESHRHPRNEAIHFVAIPLIMLSLVGLLFAAHPWVAYAFVAASLVYYA 74 Query: 66 RLSPPFAVGMLAMSAVMLVLLARLPLGAVLPVSATVFVLAWIGQFIGHRIEGKKPSFFED 125 RLS F + M +SA+ L L+ + VLP+SA +FV AWI QFIGH+IEG+KPSFFED Sbjct: 75 RLSLVFLLSMTLLSALALGLVHAMG-PWVLPLSAGIFVAAWIAQFIGHKIEGRKPSFFED 133 Query: 126 LRFLLVGPLFVLAFLYRRWNIAY 148 L++L VGPLFVL+ L+ R + + Sbjct: 134 LQYLWVGPLFVLSKLFERLGLRW 156 >ref|YP_798003.1| hypothetical protein LBL_1618 [Leptospira borgpetersenii serovar Hardjo-bovis L550] ref|YP_800727.1| hypothetical protein LBJ_1392 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gb|ABJ79070.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gb|ABJ75969.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 163 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 74/163 (45%), Positives = 109/163 (66%), Gaps = 23/163 (14%) Query: 8 RRIDVLLARYAESHRHPMNELIHCICVPAIVFSLLGLCW-IVSPAV---------ALLVA 57 + ++ + Y+ESH++P+N+ IH ICVP I F+++GL W I P++ A + Sbjct: 2 KSVETWFSEYSESHQNPVNKNIHWICVPLIYFTVIGLFWSIPVPSLFQSVPDLNFATIAL 61 Query: 58 AATLAWYLRLSPPFAVGMLAMSAVMLVLLARLPLGAVLPV------------SATVFVLA 105 +LA+YLRLSP A+GML +S++M+ L+ L G V P+ S TVF+LA Sbjct: 62 VLSLAFYLRLSPMLALGMLILSSLMIYLIVLLQ-GTVFPIIFGAYSYGILELSITVFILA 120 Query: 106 WIGQFIGHRIEGKKPSFFEDLRFLLVGPLFVLAFLYRRWNIAY 148 WIGQFIGH+IEGKKPSF +DL+FLL+GP+++L F+Y++ IAY Sbjct: 121 WIGQFIGHKIEGKKPSFLKDLQFLLIGPIWLLGFIYQKLKIAY 163 >ref|YP_548122.1| hypothetical protein Bpro_1273 [Polaromonas sp. JS666] gb|ABE43224.1| protein of unknown function DUF962 [Polaromonas sp. JS666] Length = 155 Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 70/140 (50%), Positives = 99/140 (70%), Gaps = 3/140 (2%) Query: 3 STVSPRRIDVLLARYAESHRHPMNELIHCICVPAIVFSLLGLCWIVSPAVALLVAAATLA 62 + PRR+D LL RY ESH++P NE+IH I +P I+ SL+G+ + + P VA AA++ Sbjct: 11 AATQPRRVDQLLTRYGESHQNPRNEVIHFIAIPLIMLSLVGMLFALHPYVAYAFIAASMV 70 Query: 63 WYLRLSPPFAVGMLAMSAVMLVLLARLPLG-AVLPVSATVFVLAWIGQFIGHRIEGKKPS 121 +Y+RLS F + M+ S + L L+ L +G VL +S +FV AW+ QFIGH+IEGKKPS Sbjct: 71 YYVRLSVVFLLTMVLWSLITLALV--LAMGPQVLQISIAIFVGAWVLQFIGHKIEGKKPS 128 Query: 122 FFEDLRFLLVGPLFVLAFLY 141 FFED+++L VGPLFVL+ L+ Sbjct: 129 FFEDVQYLWVGPLFVLSKLF 148