BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2185.p         (218 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775213.1| G:T/U mismatch-specific DNA glycosylase [Her...   229   1e-58
ref|ZP_03264980.1| G:T/U mismatch-specific DNA glycosylase [Burk...   205   3e-51
gb|EGD05392.1| DNA glycosylase [Burkholderia sp. TJI49]               201   8e-50
ref|ZP_03584610.1| T/U mismatch-specific DNA glycosylase [Burkho...   198   6e-49
ref|YP_001946761.1| DNA glycosylase [Burkholderia multivorans AT...   195   3e-48

>ref|YP_003775213.1| G:T/U mismatch-specific DNA glycosylase [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ63305.1| G:T/U mismatch-specific DNA glycosylase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 184

 Score =  229 bits (585), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 120/155 (77%), Positives = 135/155 (87%)

Query: 46  LLASFAPVVAPDTRILILGSLPGTASLAIRQYYGHPRNAFWRLVGEVIGVDLYAMDYAAR 105
           +LASF PVVA DTR LILGSLPG ASL +RQYYGHPRNAFW+LVGEV+G DLYAMDY  R
Sbjct: 1   MLASFPPVVARDTRTLILGSLPGVASLQMRQYYGHPRNAFWKLVGEVLGADLYAMDYPTR 60

Query: 106 LATLLQHRIGLWDVIAQARRIGSLDSEIRDHSGNDLLTLIAGLPALETIAFNGGTAGKIG 165
           L TLL HR+GLWDVIAQARRIGSLDS+IRDHS NDL TL+A LPALETIAFNGGTAGKIG
Sbjct: 61  LQTLLAHRVGLWDVIAQARRIGSLDSDIRDHSQNDLQTLLAQLPALETIAFNGGTAGKIG 120

Query: 166 IKALGAKAENYRVVVLPSSSPAHAALAYEDKRARW 200
           ++ALG +A  YR+++LPSSSPA+AAL+Y  K A W
Sbjct: 121 LQALGEQAGCYRILLLPSSSPAYAALSYAQKLASW 155


>ref|ZP_03264980.1| G:T/U mismatch-specific DNA glycosylase [Burkholderia sp. H160]
 gb|EEA03402.1| G:T/U mismatch-specific DNA glycosylase [Burkholderia sp. H160]
          Length = 163

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 104/151 (68%), Positives = 118/151 (78%)

Query: 50  FAPVVAPDTRILILGSLPGTASLAIRQYYGHPRNAFWRLVGEVIGVDLYAMDYAARLATL 109
           FAPVV  DTRILILGSLPG  SLA  QYY HP+N FW LVGEVI  DL  MDY+ RL TL
Sbjct: 7   FAPVVDADTRILILGSLPGEVSLAHGQYYAHPQNKFWLLVGEVIERDLVGMDYSTRLDTL 66

Query: 110 LQHRIGLWDVIAQARRIGSLDSEIRDHSGNDLLTLIAGLPALETIAFNGGTAGKIGIKAL 169
           L+H IGLWDV+A+ARR GSLDS IRDH+ NDL+ LI  LP L TIAFNGGTA +IG+KAL
Sbjct: 67  LEHHIGLWDVVAEARRAGSLDSRIRDHASNDLIALIDTLPNLATIAFNGGTAARIGMKAL 126

Query: 170 GAKAENYRVVVLPSSSPAHAALAYEDKRARW 200
           G +AE YR+V LPSSSPAHA+++Y  K   W
Sbjct: 127 GERAEQYRLVRLPSSSPAHASVSYAQKLDLW 157


>gb|EGD05392.1| DNA glycosylase [Burkholderia sp. TJI49]
          Length = 163

 Score =  201 bits (510), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 103/151 (68%), Positives = 119/151 (78%)

Query: 50  FAPVVAPDTRILILGSLPGTASLAIRQYYGHPRNAFWRLVGEVIGVDLYAMDYAARLATL 109
           F PVV  +TRILILGSLPG  SLA+RQYYGHP+N FW LVGEVI  DL  M Y ARL TL
Sbjct: 6   FPPVVDANTRILILGSLPGERSLALRQYYGHPQNKFWSLVGEVIERDLVGMSYPARLDTL 65

Query: 110 LQHRIGLWDVIAQARRIGSLDSEIRDHSGNDLLTLIAGLPALETIAFNGGTAGKIGIKAL 169
           L+HRIGLWDV+A+ARRIGSLDS IRDH+ NDL+ LI  LP L TIAFNGGTA KIG+ AL
Sbjct: 66  LEHRIGLWDVVAEARRIGSLDSRIRDHASNDLVALIGTLPNLTTIAFNGGTAAKIGMTAL 125

Query: 170 GAKAENYRVVVLPSSSPAHAALAYEDKRARW 200
           G     YR++ LPSSSPA+A+++Y +K A W
Sbjct: 126 GDDGSRYRLLRLPSSSPAYASISYAEKLAVW 156


>ref|ZP_03584610.1| T/U mismatch-specific DNA glycosylase [Burkholderia multivorans
           CGD1]
 gb|EEE01460.1| T/U mismatch-specific DNA glycosylase [Burkholderia multivorans
           CGD1]
          Length = 163

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 102/151 (67%), Positives = 119/151 (78%)

Query: 50  FAPVVAPDTRILILGSLPGTASLAIRQYYGHPRNAFWRLVGEVIGVDLYAMDYAARLATL 109
           F PVV  +TRILILGSLPG  SLA+RQYYGHP+N FW LVG+VI  DL  M Y ARL TL
Sbjct: 6   FPPVVDANTRILILGSLPGERSLALRQYYGHPQNKFWSLVGDVIERDLVGMSYPARLDTL 65

Query: 110 LQHRIGLWDVIAQARRIGSLDSEIRDHSGNDLLTLIAGLPALETIAFNGGTAGKIGIKAL 169
           L+HRIGLWDV+AQA RIGSLDS IRDH+ NDL+ LI  LP L TIAFNGGTA KIG+ AL
Sbjct: 66  LEHRIGLWDVVAQASRIGSLDSRIRDHASNDLIALIETLPNLTTIAFNGGTAAKIGMTAL 125

Query: 170 GAKAENYRVVVLPSSSPAHAALAYEDKRARW 200
           G +   YR++ LPSSSPA+A+++Y +K A W
Sbjct: 126 GEEGARYRLLRLPSSSPAYASISYAEKLAAW 156


>ref|YP_001946761.1| DNA glycosylase [Burkholderia multivorans ATCC 17616]
 dbj|BAG44225.1| DNA glycosylase [Burkholderia multivorans ATCC 17616]
          Length = 163

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 101/151 (66%), Positives = 118/151 (78%)

Query: 50  FAPVVAPDTRILILGSLPGTASLAIRQYYGHPRNAFWRLVGEVIGVDLYAMDYAARLATL 109
           F PVV  +TR LILGSLPG  SLA+RQYYGHP+N FW LVG+VI  DL  M Y ARL TL
Sbjct: 6   FPPVVDANTRSLILGSLPGERSLALRQYYGHPQNKFWSLVGDVIERDLVGMSYPARLDTL 65

Query: 110 LQHRIGLWDVIAQARRIGSLDSEIRDHSGNDLLTLIAGLPALETIAFNGGTAGKIGIKAL 169
           L+HRIGLWDV+AQA RIGSLDS IRDH+ NDL+ LI  LP L TIAFNGGTA KIG+ AL
Sbjct: 66  LEHRIGLWDVVAQASRIGSLDSRIRDHASNDLIALIETLPNLTTIAFNGGTAAKIGMTAL 125

Query: 170 GAKAENYRVVVLPSSSPAHAALAYEDKRARW 200
           G +   YR++ LPSSSPA+A+++Y +K A W
Sbjct: 126 GEEGARYRLLRLPSSSPAYASISYAEKLAAW 156