BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2184.p (328 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775212.1| metal ion ABC transporter periplasmic compon... 447 e-123 ref|YP_004751355.1| methionine ABC transporter substrate-binding... 411 e-112 ref|YP_002945670.1| lipoprotein, YaeC family [Variovorax paradox... 348 9e-94 ref|YP_440322.1| D-methionine-binding lipoprotein metQ [Burkhold... 338 6e-91 ref|YP_004156656.1| lipoprotein, yaec family [Variovorax paradox... 330 1e-88 >ref|YP_003775212.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] gb|ADJ63304.1| ABC-type metal ion transport system, periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 239/265 (90%), Positives = 252/265 (95%) Query: 64 IKRIAAAAALTLVLAPHGASAQDKNKIKVGISVGSAEAIFDVVKKVAARDGLEIQTVVFS 123 IKR+AA AL+L L P AQDK KIKVGISVGSAEAIFDVVKKVAARDGLEIQTVVFS Sbjct: 10 IKRLAAIGALSLALVPQLGQAQDKQKIKVGISVGSAEAIFDVVKKVAARDGLEIQTVVFS 69 Query: 124 DYLQPNAALASGDLDANAFQHRPYLESQIAARGYKIVPVGLTITAPLGIYSRKFKSVDQL 183 DYLQPNAALA+GDLDANAFQHRPYLESQIAARGY+IVPVGLTITAPLGIYSRKF+SV+QL Sbjct: 70 DYLQPNAALAAGDLDANAFQHRPYLESQIAARGYRIVPVGLTITAPLGIYSRKFRSVEQL 129 Query: 184 PNGAQVGIQNDPSNGNRALLLLQKAGLIKLKPGVGENGVNATPLDIIDNPRKLKLIELDA 243 P GA +GIQNDPSNGNRALLLLQKAGLI+LKPGVGENGVNATPLD+I+NPRKLKL+ELDA Sbjct: 130 PQGAAIGIQNDPSNGNRALLLLQKAGLIRLKPGVGENGVNATPLDVIENPRKLKLVELDA 189 Query: 244 AQLPRSLDDLAAASINNDYAYKAGLSLQKDTIAVEDPRGRYANIIATRAEDKDKPWARKL 303 AQLPRSLDDLAAASINNDYA+KAGLSLQKDTIAVEDPRGRYANIIATRAEDKD+PW RKL Sbjct: 190 AQLPRSLDDLAAASINNDYAFKAGLSLQKDTIAVEDPRGRYANIIATRAEDKDRPWVRKL 249 Query: 304 VQAYQSEEVRKFIETEFKGSLVPAF 328 VQAY SEEVRKFIETEFKGSLVPAF Sbjct: 250 VQAYHSEEVRKFIETEFKGSLVPAF 274 >ref|YP_004751355.1| methionine ABC transporter substrate-binding protein [Collimonas fungivorans Ter331] gb|AEK60532.1| Methionine ABC transporter substrate-binding protein [Collimonas fungivorans Ter331] Length = 321 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 212/297 (71%), Positives = 246/297 (82%), Gaps = 5/297 (1%) Query: 32 YRHANSFLLPGARVCEDADLIISGVTMPLAAIIKRIAAAAALTLVLAPHGASAQDKNKIK 91 YRHA SF+ +CE + I G M + A L L + A AQDK +IK Sbjct: 30 YRHAKSFVSDCRGLCE-YRVFIHGAKMRHLFL----KALPVLLLAVGIVTAHAQDKTRIK 84 Query: 92 VGISVGSAEAIFDVVKKVAARDGLEIQTVVFSDYLQPNAALASGDLDANAFQHRPYLESQ 151 VG+SVG+AE F+VVKKVAA++GL+IQ + FSDYLQPN ALA+GDLDANAFQH+P+L+SQ Sbjct: 85 VGVSVGNAEQTFEVVKKVAAQEGLDIQVITFSDYLQPNEALAAGDLDANAFQHKPFLDSQ 144 Query: 152 IAARGYKIVPVGLTITAPLGIYSRKFKSVDQLPNGAQVGIQNDPSNGNRALLLLQKAGLI 211 I ARGYKIVPV LTITAPLGIYS+K+++VDQLP GA +GIQNDPSNGNRALLLLQKAGLI Sbjct: 145 IKARGYKIVPVALTITAPLGIYSKKYRNVDQLPQGASIGIQNDPSNGNRALLLLQKAGLI 204 Query: 212 KLKPGVGENGVNATPLDIIDNPRKLKLIELDAAQLPRSLDDLAAASINNDYAYKAGLSLQ 271 KLK GVGENGVNATPLD++ NP+KLKL+ELDAAQLPRSLDDLAAAS+NNDYA KAGLSLQ Sbjct: 205 KLKAGVGENGVNATPLDVVSNPKKLKLVELDAAQLPRSLDDLAAASVNNDYAVKAGLSLQ 264 Query: 272 KDTIAVEDPRGRYANIIATRAEDKDKPWARKLVQAYQSEEVRKFIETEFKGSLVPAF 328 +D IAVED +G YAN+IATRAEDKDKPW +KLV+AYQS +VR FIETEFKGSL+PAF Sbjct: 265 RDAIAVEDAKGPYANLIATRAEDKDKPWVKKLVKAYQSAQVRNFIETEFKGSLIPAF 321 >ref|YP_002945670.1| lipoprotein, YaeC family [Variovorax paradoxus S110] gb|ACS20404.1| lipoprotein, YaeC family [Variovorax paradoxus S110] Length = 274 Score = 348 bits (892), Expect = 9e-94, Method: Composition-based stats. Identities = 188/265 (70%), Positives = 214/265 (80%), Gaps = 4/265 (1%) Query: 67 IAAAAALTLVLAPHGASAQD---KNKIKVGISVGSAEAIFDVVKKVAARDGLEIQTVVFS 123 + A A +L+ A AQD KN +KVGISVGSAE +F+VVKKVAA+DGL IQ VVF+ Sbjct: 11 VLATLAASLIFCGSAAFAQDNGNKNTVKVGISVGSAEQVFEVVKKVAAKDGLNIQLVVFN 70 Query: 124 DYLQPNAALASGDLDANAFQHRPYLESQIAARGYKIVPVGLTITAPLGIYSRKFKSVDQL 183 DY PNAALASGDLDANAFQH+P+L++Q ARG+ IVPVGLTITAPLG YSRK KS+DQL Sbjct: 71 DYQLPNAALASGDLDANAFQHQPFLDNQNKARGFDIVPVGLTITAPLGFYSRKIKSIDQL 130 Query: 184 PNGAQVGIQNDPSNGNRALLLLQKAGLIKLKPGVGENGVNATPLDIIDNPRKLKLIELDA 243 P+GA VGIQNDPSNGNRALLLLQ AGLI LKP +N ATPLD++ NP+KLKL+ LDA Sbjct: 131 PDGAAVGIQNDPSNGNRALLLLQSAGLITLKPEAVKNN-TATPLDVVSNPKKLKLVPLDA 189 Query: 244 AQLPRSLDDLAAASINNDYAYKAGLSLQKDTIAVEDPRGRYANIIATRAEDKDKPWARKL 303 AQLPRSLDDLA A+INNDYA KAGLSL KD + E + YAN+IA R DKDKPWAR+L Sbjct: 190 AQLPRSLDDLAIAAINNDYAEKAGLSLNKDAVIKEAAKSPYANLIAVRRADKDKPWARRL 249 Query: 304 VQAYQSEEVRKFIETEFKGSLVPAF 328 V AYQS EVR FIET+FKGSLVPAF Sbjct: 250 VAAYQSPEVRSFIETQFKGSLVPAF 274 >ref|YP_440322.1| D-methionine-binding lipoprotein metQ [Burkholderia thailandensis E264] gb|ABC34290.1| D-methionine-binding lipoprotein metQ [Burkholderia thailandensis E264] Length = 297 Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats. Identities = 180/299 (60%), Positives = 223/299 (74%), Gaps = 7/299 (2%) Query: 34 HANSFLLPGARVCEDADLIISGV---TMP-LAAIIKRIAAAAALTLVLAPHGASAQDKNK 89 + N + P C+DA G+ TM A+II+R A A L + A D Sbjct: 2 YENCLVCPFGATCDDARFPHDGMRGHTMQRFASIIRRAAGGAVLAIAATLAHA---DGPA 58 Query: 90 IKVGISVGSAEAIFDVVKKVAARDGLEIQTVVFSDYLQPNAALASGDLDANAFQHRPYLE 149 +++G G I+ V KVAARDGL I+ + F+DY+QPNAAL +GDLDAN FQH+P+L+ Sbjct: 59 LRIGTMSGPDAQIWAEVTKVAARDGLAIKVIEFNDYVQPNAALDAGDLDANGFQHQPFLD 118 Query: 150 SQIAARGYKIVPVGLTITAPLGIYSRKFKSVDQLPNGAQVGIQNDPSNGNRALLLLQKAG 209 SQI RGYKIV VGLT T+P+G YS + KS+ LP GA+VGIQNDPSNGNRALLLLQK G Sbjct: 119 SQIRQRGYKIVNVGLTYTSPMGFYSNRLKSLKDLPAGAKVGIQNDPSNGNRALLLLQKYG 178 Query: 210 LIKLKPGVGENGVNATPLDIIDNPRKLKLIELDAAQLPRSLDDLAAASINNDYAYKAGLS 269 ++KLKPGVG NGVNATPLD+++NPRK+KL+ELDAAQLPR+L DL AASIN DYA KAGLS Sbjct: 179 IVKLKPGVGANGVNATPLDVVENPRKIKLVELDAAQLPRALPDLDAASINTDYAVKAGLS 238 Query: 270 LQKDTIAVEDPRGRYANIIATRAEDKDKPWARKLVQAYQSEEVRKFIETEFKGSLVPAF 328 +D IA E+P+G YAN+IA RA+DKDKPW RKLV AY+S++VRKFIET+F G++VPAF Sbjct: 239 PVRDAIATEEPKGPYANLIAVRAQDKDKPWVRKLVAAYESDDVRKFIETKFNGAIVPAF 297 >ref|YP_004156656.1| lipoprotein, yaec family [Variovorax paradoxus EPS] gb|ADU38545.1| lipoprotein, YaeC family [Variovorax paradoxus EPS] Length = 271 Score = 330 bits (847), Expect = 1e-88, Method: Composition-based stats. Identities = 184/248 (74%), Positives = 209/248 (84%), Gaps = 2/248 (0%) Query: 82 ASAQD-KNKIKVGISVGSAEAIFDVVKKVAARDGLEIQTVVFSDYLQPNAALASGDLDAN 140 A AQD KN +KVG+SVG+ E IF+VVKKVAARDGL IQ VVF+DY PNAALASGDLDAN Sbjct: 25 AFAQDNKNTLKVGVSVGNGEQIFEVVKKVAARDGLNIQVVVFNDYQLPNAALASGDLDAN 84 Query: 141 AFQHRPYLESQIAARGYKIVPVGLTITAPLGIYSRKFKSVDQLPNGAQVGIQNDPSNGNR 200 AFQH+P+L++Q ARG+ IVPVGLTITAPLG YSRK KS+DQLP+GA VGIQNDPSNGNR Sbjct: 85 AFQHQPFLDNQNKARGFDIVPVGLTITAPLGFYSRKIKSIDQLPDGASVGIQNDPSNGNR 144 Query: 201 ALLLLQKAGLIKLKPGVGENGVNATPLDIIDNPRKLKLIELDAAQLPRSLDDLAAASINN 260 ALLLLQ+AGLI LKP +N NATPLD++ NP+KLKL+ LDAAQLPRSLDDL ASINN Sbjct: 145 ALLLLQQAGLITLKPEAVKNN-NATPLDVVTNPKKLKLVALDAAQLPRSLDDLTIASINN 203 Query: 261 DYAYKAGLSLQKDTIAVEDPRGRYANIIATRAEDKDKPWARKLVQAYQSEEVRKFIETEF 320 DYA KAGLSL KD + E P+ YAN+IA R DKDKPWA++LV AYQS EV+ FIET+F Sbjct: 204 DYAEKAGLSLNKDAVIKEAPKSPYANLIAVRRADKDKPWAKRLVAAYQSPEVKSFIETQF 263 Query: 321 KGSLVPAF 328 KGSLVPAF Sbjct: 264 KGSLVPAF 271