BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2181.p (495 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08183272.1| hypothetical protein XGA_2266 [Xanthomonas ga... 243 7e-62 ref|YP_364588.1| hypothetical protein XCV2857 [Xanthomonas campe... 236 7e-60 ref|NP_637881.1| hypothetical protein XCC2533 [Xanthomonas campe... 232 1e-58 ref|YP_001903035.1| hypothetical protein xccb100_1629 [Xanthomon... 228 2e-57 ref|ZP_08177846.1| hypothetical protein XVE_1738 [Xanthomonas ve... 225 2e-56 >ref|ZP_08183272.1| hypothetical protein XGA_2266 [Xanthomonas gardneri ATCC 19865] gb|EGD19170.1| hypothetical protein XGA_2266 [Xanthomonas gardneri ATCC 19865] Length = 470 Score = 243 bits (619), Expect = 7e-62, Method: Composition-based stats. Identities = 165/461 (35%), Positives = 250/461 (54%), Gaps = 31/461 (6%) Query: 37 AAMLFLFLHWSMNVRVFPYDAGEYWALANPSTFFDFPATTRGYFWPLLLLPARWFQHIGA 96 AA +F N +F DAG YWA+++ +FP T RGYF+PLLL P R+ + Sbjct: 30 AAFIFFASQLITNATIFQGDAGAYWAISSAIVDGNFPQTIRGYFYPLLLTPFRFIFNHSE 89 Query: 97 EVALLAFRILTSLVYGFALTIILPAFYIRIVGGRVNFYRRMVVPVLVALLFPGVIVYPLA 156 + LL+ +I ++ YG+ L+I+LP FY I+G R + +RR+V +LVAL+FPG+I YPL+ Sbjct: 90 SLGLLSLKIGQAIGYGYLLSILLPDFYQAILGARTSTFRRIVPSLLVALIFPGLIAYPLS 149 Query: 157 DLPAILLLFGGLSWLVFATSKNQFGKRKLFSLVMAGMMIGAAYNTRTIYLFSMLCVVVAI 216 D P+ GL S L L+ AG++ AYNTRTIY+FS + +++I Sbjct: 150 DAPSF-----GLMATALHLSLKAIRSHSLILLLAAGLLAYFAYNTRTIYMFSFI-ALISI 203 Query: 217 PFAFFRHEGMKTKAWMLSAFFIGVSLVSLPQALVNLHSKKTFTPMVLTDNGGKSLFALQL 276 F F + + KA ++ F +G ++ ++PQ +N H T +P+V+TD GKSLF QL Sbjct: 204 VF-IFSAKNISHKAIAVACFLLGSAVGAIPQMAINHHYHGTASPLVVTDKDGKSLFVRQL 262 Query: 277 MWGITLQRYETVIDP---SVTPSRFYVDPAGRRIAELEMIAKDKIALSNYFAIVRKYPVE 333 WG+ + +YET IDP TP FY + G I + E + + F ++ ++P+ Sbjct: 263 TWGMVVDKYETYIDPGTHQATPV-FYANDEGASILQNEGGFTENQSFPRIFKMMSEHPIA 321 Query: 334 FAGIYVRHFFNGLDLRDGEVYVRDAKSEGNIISLLNFLVVLAALYGFFSRRLHCRAAPDA 393 F IY+RH LD RDG+VY SE + SL F +++A L G R A Sbjct: 322 FVKIYIRHVALALDARDGDVYTNLPSSEKSTHSL--FFLIIACL-GL------TRLAASL 372 Query: 394 SAEDGTLPHITQEKSPWIWIGIILLPVIAIIPGAVETRFFLPLQLLFYCSIAFNVILPDA 453 A+D + +++ ++ LP IA+IPGA+ETRFFLP+ + YC++AF I Sbjct: 373 LAQDKN----RKTAENLLYLSVLALPCIAVIPGAIETRFFLPIYCISYCALAFESI---- 424 Query: 454 WKTMRLRKWFVWSVLLVMLASQVAITSSTMGTRQYASPDMY 494 K ++ + + +LV A TS M + Y P+ Y Sbjct: 425 -KHKKVVGQLICAAILVTCIFCFAETS--MQSPNYTRPESY 462 >ref|YP_364588.1| hypothetical protein XCV2857 [Xanthomonas campestris pv. vesicatoria str. 85-10] emb|CAJ24536.1| putative membrane protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 465 Score = 236 bits (602), Expect = 7e-60, Method: Composition-based stats. Identities = 153/419 (36%), Positives = 221/419 (52%), Gaps = 24/419 (5%) Query: 34 FALAAMLFLFLHWSMNVRVFPYDAGEYWALANPSTFFDFPATTRGYFWPLLLLPARWFQH 93 F +AA +F ++ R F DAG YWAL++ FP T RGY +PLLL P R Sbjct: 24 FIVAAAIFFIAQLIIDARDFTGDAGAYWALSSAIINGTFPQTIRGYAYPLLLTPFRLVFD 83 Query: 94 IGAEVALLAFRILTSLVYGFALTIILPAFYIRIVGGRVNFYRRMVVPVLVALLFPGVIVY 153 LL+ +I S+ Y + +I+LP Y I G +++ RR++ P L+A +FPG+I Y Sbjct: 84 QSQPAGLLSLKIGQSIGYAYTFSILLPNLYRSIFGEKLSTARRLIPPTLIASVFPGLISY 143 Query: 154 PLADLPAILLLFGGLSWLVFATSKNQFGKRKLFSLVMAGMMIGAAYNTRTIYLFSMLCVV 213 PL+D P++ GL L + N + L+ L AG++ YN RTIYLFS + Sbjct: 144 PLSDAPSL-----GLMALSVYITVNSIRSKSLYGLFAAGLICYLTYNIRTIYLFSF--IA 196 Query: 214 VAIPFAFFRHEGMKTKAWMLSAFFIGVSLVSLPQALVNLHSKKTFTPMVLTDNGGKSLFA 273 +AI A F + ++ +A+ L+ F G + +LPQ +N T +P+V+TD G SLFA Sbjct: 197 LAIVSATFFAKDIQHRAFALATFLAGSLIGALPQIAINHTHHATMSPLVVTDVRGASLFA 256 Query: 274 LQLMWGITLQRYETVIDPSV---TPSRFYVDPAGRRIAELEMIAKDKIALSNYFAIVRKY 330 QL WG+ + RYET IDP TP+ FY + G + E + + AI+ K+ Sbjct: 257 RQLTWGMVVDRYETYIDPGTAKATPT-FYANQRGAALLEKNGGFVKNQSFTRMLAIMAKH 315 Query: 331 PVEFAGIYVRHFFNGLDLRDGEVYVRDAKSEGNIISLLNFLVVLAALYGFFSRRLHCRAA 390 P+ F IY+RH + LD RDGEVY + +E N S+L ++V + + Sbjct: 316 PITFFQIYLRHTASALDARDGEVYTKQPSAEKNRRSILFLIIVTFGITQLGKAIFFAPSQ 375 Query: 391 PDASAEDGTLPHITQEKSPWIWIGIILLPVIAIIPGAVETRFFLPLQLLFYCSIAFNVI 449 SA ++ +L P IAIIPGA+ETRFFLPL L YC++AF I Sbjct: 376 QTVSARA-------------LYTLTLLAPCIAIIPGAIETRFFLPLYCLAYCALAFQEI 421 >ref|NP_637881.1| hypothetical protein XCC2533 [Xanthomonas campestris pv. campestris str. ATCC 33913] ref|YP_242671.1| hypothetical protein XC_1585 [Xanthomonas campestris pv. campestris str. 8004] gb|AAM41805.1| hypothetical protein XCC2533 [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAY48651.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 469 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 154/431 (35%), Positives = 237/431 (54%), Gaps = 25/431 (5%) Query: 27 RHQ-EWWAFALAAMLFLFLHWSMNVRVFPYDAGEYWALANPSTFFDFPATTRGYFWPLLL 85 RHQ E A +A+ F + +++ + F DAG YWAL++ T FP T RGY +PLLL Sbjct: 19 RHQAELIALFIASSAFFAIQLAIDAKAFTGDAGAYWALSSAITEGTFPKTIRGYSYPLLL 78 Query: 86 LPARWFQHIGAEVALLAFRILTSLVYGFALTIILPAFYIRIVGGRVNFYRRMVVPVLVAL 145 P R+ + LL ++ S+ YG+ +I+LP Y I + + + R++ +L+A Sbjct: 79 TPFRFAFDHSEQAGLLLLKLGQSIGYGYLFSILLPNLYQVIFDAKPSAFTRLIPALLMAF 138 Query: 146 LFPGVIVYPLADLPAILLLFGGLSWLVFATSKNQFGKRKLFS-LVMAGMMIGAAYNTRTI 204 FPG+I YPL+D P+ FG ++ ++A K K + FS L++AG++ AYNTRTI Sbjct: 139 AFPGLISYPLSDAPS----FGIMALALYACIKAI--KSQSFSLLIVAGLLAYLAYNTRTI 192 Query: 205 YLFSMLCVVVAIPFAFFRHEGMKTKAWMLSAFFIGVSLVSLPQALVNLHSKKTFTPMVLT 264 YLFS ++V A F + +K + + + F +G + + PQ +N T TP+V+T Sbjct: 193 YLFSFFTLMVIA--AIFFSKSLKQRFFASTCFLLGALVGAAPQMAINYSHHSTRTPLVVT 250 Query: 265 DNGGKSLFALQLMWGITLQRYETVIDPSVTPS--RFYVDPAGRRIAELEMIAKDKIALSN 322 D G SLFA QL WG+ + +YET IDP + FY + G I + ++ ++ Sbjct: 251 DVRGASLFARQLAWGMIVDKYETHIDPQTKKAIPVFYANNNGALILQQNGGFENNQSVVK 310 Query: 323 YFAIVRKYPVEFAGIYVRHFFNGLDLRDGEVYVRDAKSEGNIISLLNFLVVLAALYGFFS 382 ++ ++P+ F IY+RH LD+RDGEVY R+ SE NI SL+ +VL L Sbjct: 311 IAGLMTQHPITFINIYLRHIALALDVRDGEVYTRNPTSEKNIQSLILLSIVLFGLTQ-LG 369 Query: 383 RRLHCRAAPDASAEDGTLPHITQEKSPWIWIGIILLPVIAIIPGAVETRFFLPLQLLFYC 442 R + +A+ + ++ ++L P IAIIPGA+ETRFFLP+ L YC Sbjct: 370 RAIFFQASSEPV------------NRRLLYTLVLLAPCIAIIPGAIETRFFLPIHCLSYC 417 Query: 443 SIAFNVILPDA 453 ++AF I +A Sbjct: 418 ALAFGGIKKEA 428 >ref|YP_001903035.1| hypothetical protein xccb100_1629 [Xanthomonas campestris pv. campestris str. B100] emb|CAP50979.1| Putative membrane protein [Xanthomonas campestris pv. campestris] Length = 469 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 148/430 (34%), Positives = 230/430 (53%), Gaps = 23/430 (5%) Query: 27 RHQ-EWWAFALAAMLFLFLHWSMNVRVFPYDAGEYWALANPSTFFDFPATTRGYFWPLLL 85 RHQ E A +A+ F + +++ + F DAG YWAL++ T FP T RGY +PLLL Sbjct: 19 RHQAELIALFIASSAFFAIQLAIDAKAFTGDAGAYWALSSAITEGTFPKTIRGYSYPLLL 78 Query: 86 LPARWFQHIGAEVALLAFRILTSLVYGFALTIILPAFYIRIVGGRVNFYRRMVVPVLVAL 145 P R+ + LL ++ S+ YG+ +I+ P Y I + + + R++ +L+A Sbjct: 79 TPFRFAFDHSEQAGLLLLKLGQSIGYGYLFSILFPNLYQVIFDAKPSAFTRLIPALLMAF 138 Query: 146 LFPGVIVYPLADLPAILLLFGGLSWLVFATSKNQFGKRKLFSLVMAGMMIGAAYNTRTIY 205 FPG+I YPL+D P++ ++ L + A F L++AG++ AYNTRTIY Sbjct: 139 AFPGLISYPLSDAPSLGIMALALYACIKAIKSQSFS-----LLIVAGLLAYLAYNTRTIY 193 Query: 206 LFSMLCVVVAIPFAFFRHEGMKTKAWMLSAFFIGVSLVSLPQALVNLHSKKTFTPMVLTD 265 LFS ++V A F + +K + + + F +G + + PQ +N T TP+V+TD Sbjct: 194 LFSFFTLMVIA--AIFFSKSLKQRFFASTCFLLGALVGAAPQMAINYSHHSTRTPLVVTD 251 Query: 266 NGGKSLFALQLMWGITLQRYETVIDPSVTPS--RFYVDPAGRRIAELEMIAKDKIALSNY 323 G LFA QL WG+ + +YET IDP + FY + G I + ++ ++ Sbjct: 252 VRGAPLFARQLAWGMIVDKYETHIDPQTKKAIPVFYANNNGALILQQNGGFENNQSVVKI 311 Query: 324 FAIVRKYPVEFAGIYVRHFFNGLDLRDGEVYVRDAKSEGNIISLLNFLVVLAALYGFFSR 383 ++ ++P+ F IY+RH LD+RDGEVY R+ SE NI SL+ +VL L R Sbjct: 312 AGLMTQHPITFINIYLRHIALALDVRDGEVYTRNPTSEKNIQSLILLSIVLFGLTQ-LGR 370 Query: 384 RLHCRAAPDASAEDGTLPHITQEKSPWIWIGIILLPVIAIIPGAVETRFFLPLQLLFYCS 443 + +A+ + ++ ++L P IAIIPGA+ETRFFLP+ L YC+ Sbjct: 371 AIFFQASSEPV------------NRRLLYTLVLLAPCIAIIPGAIETRFFLPIHCLSYCA 418 Query: 444 IAFNVILPDA 453 +AF I +A Sbjct: 419 LAFGGIKKEA 428 >ref|ZP_08177846.1| hypothetical protein XVE_1738 [Xanthomonas vesicatoria ATCC 35937] gb|EGD09936.1| hypothetical protein XVE_1738 [Xanthomonas vesicatoria ATCC 35937] Length = 437 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 148/411 (36%), Positives = 217/411 (52%), Gaps = 24/411 (5%) Query: 39 MLFLFLHWSMNVRVFPYDAGEYWALANPSTFFDFPATTRGYFWPLLLLPARWFQHIGAEV 98 M+F + + R F DAG YWA+++ FP T RGY +PLLL P R + Sbjct: 1 MIFFAVQLIIEARDFTGDAGAYWAISSAIIDGAFPQTIRGYVYPLLLTPFRLVFNHSPPA 60 Query: 99 ALLAFRILTSLVYGFALTIILPAFYIRIVGGRVNFYRRMVVPVLVALLFPGVIVYPLADL 158 LL +I S+ Y +A +I++P Y I GG+++ RR+V LVA +FPG+I YPL+D Sbjct: 61 GLLFLKIGQSVWYAYAFSILIPNLYGSIFGGKISTTRRLVPSFLVASVFPGLISYPLSDA 120 Query: 159 PAILLLFGGLSWLVFATSKNQFGKRKLFSLVMAGMMIGAAYNTRTIYLFSMLCVVVAIPF 218 P+++ + L V + F + L AG+ YN RTIYLFS + +AI Sbjct: 121 PSLVFMALSLHITVKSIRSKSF-----YGLFAAGLTCYLTYNIRTIYLFSF--IALAIVA 173 Query: 219 AFFRHEGMKTKAWMLSAFFIGVSLVSLPQALVNLHSKKTFTPMVLTDNGGKSLFALQLMW 278 A F ++ + + L FF G L ++PQ +N T +P+V+TD G SLF QL W Sbjct: 174 ATFFANSVQRRTFALLIFFAGSLLGAVPQMAINYTHHATLSPLVVTDVRGASLFVRQLTW 233 Query: 279 GITLQRYETVIDP---SVTPSRFYVDPAGRRIAELEMIAKDKIALSNYFAIVRKYPVEFA 335 G+ + RYET IDP TP+ FY + G + E + + A++ +P+ FA Sbjct: 234 GMVVDRYETYIDPITGKATPT-FYANERGAAVLEKNGGFVVNQSFAKILALMADHPITFA 292 Query: 336 GIYVRHFFNGLDLRDGEVYVRDAKSEGNIISLLNFLVVLAALYGFFSRRLHCRAAPDASA 395 IY+RH + LD+RDGEVY + +E N S+L ++V + L ++ SA Sbjct: 293 QIYLRHAASALDVRDGEVYTKQPSAEKNSRSILFLIIVSLGITQLGKAILFAQSQQSVSA 352 Query: 396 EDGTLPHITQEKSPWIWIGIILLPVIAIIPGAVETRFFLPLQLLFYCSIAF 446 L +T ++ P +AIIPGA+ETRFFLPL L YC++AF Sbjct: 353 R--ILCTLT-----------LVAPCVAIIPGAIETRFFLPLHCLAYCALAF 390