BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2177.p         (537 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004647380.1| hypothetical protein F7308_0853 [Francisella...   192   2e-46

>ref|YP_004647380.1| hypothetical protein F7308_0853 [Francisella sp. TX077308]
 gb|AEI35780.1| hypothetical protein F7308_0853 [Francisella sp. TX077308]
          Length = 568

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 152/532 (28%), Positives = 241/532 (45%), Gaps = 60/532 (11%)

Query: 42  NDDAGMAMIAHGYGIAAFGSPNIVFSNVLWGHFVRAIPSIDGLDGYSVAMIGVLFVVTAT 101
           NDD G++MI+ GYGIAA  +PN+ FSN L+G  +  +P I G+  YS      LFV + T
Sbjct: 34  NDDVGLSMISAGYGIAANATPNLTFSNALYGEILNHLPVIAGILPYSYMTFFALFVASYT 93

Query: 102 TIYGLRELKTSITLCTLIAAFLFVRPVLFPQFTINAGLLGIAGVICLLVFIRERSRAILL 161
            +  L +   S ++  +I   +FVR +  PQFT+N+GLL +A  + LL + +E       
Sbjct: 94  LLDCLSKFNVSRSISCIIVLVIFVRAISMPQFTVNSGLLALASALSLLSYNKEPKLKYAF 153

Query: 162 LGAVLLFTGYLIRSREVLFVLLVSAPLVPWRNLIQDRVAKFVIGAFFAAVLIAALVDYQA 221
           L  +L F  YLIR  E+ FV LV+ P +  + L+     K  +       L A   D   
Sbjct: 154 LFIILAFYSYLIRYEELYFVYLVAIPFILSKELLSKSYLKLFM-VLLILCLFAKYFDSLH 212

Query: 222 YQTASWATFNETSKVISPIVDFGAGALLRQHPAILQAHGYSTNDIDLLINWFFVDLNILD 281
           Y   S+  FN   K +S ++D+G  + L QHP +L++HGYS ND+ L+  + F+D  +++
Sbjct: 213 YSMVSFDKFNGLKKYLSILIDYGGASYLIQHPELLKSHGYSVNDMSLIRAFVFIDPYVVN 272

Query: 282 VNKLKQMLAELGPLPTQANSLSNAMTGIRFLWNKELIAPMLAALFML-FVLPSRRVFISW 340
            ++L  +L    P      ++   +  IR +++  +   ++  L ++ F     ++  SW
Sbjct: 273 QSRLHDLLVYYTPTARVHANIWLGVEAIRSIFSDSMSYLVIFGLSIVPFSKHKYKLIFSW 332

Query: 341 IIFLAGIFTLGLMGRPGILHVYIPLAG-----------------------LLLTAPFLIG 377
           +IF   I  LG+ GRP IL VY  +                         L++++ F+ G
Sbjct: 333 VIFSCLIAFLGIEGRPSILRVYYAVICLLALLPLISLDNKNIRNIYCWIILVISSIFIYG 392

Query: 378 -----------------PVPPRRARMAMIGLAVVLI---------PYTIN--LCIEANTA 409
                             V   R    +I + +V +          Y +N  L ++AN A
Sbjct: 393 INSYLAYSAIVLAIVFMVVDIFRGTKVVINIIIVALFSLVIAVSYNYELNRSLVVQANNA 452

Query: 410 KSTVARIQKDLTEFPSTTVVNWASSFPFQAAYPFLGRHKADMPFRLYSLGGLAQAPYMNT 469
                  Q D  + P      +  S+PFQ  Y  L         +L S GGL   P  N+
Sbjct: 453 -------QNDYKQLPKGIYYIFGDSYPFQYIYTPLDNDLDITHIKLNSFGGLYYMPGTNS 505

Query: 470 FVDQSKRQGVPDLLASESGMKFIAIAPYFDLLAKYCEEHLHGDLQEISVHKY 521
           +      + + D+  S   +K IA   Y DLL+KYC EH    L  +    Y
Sbjct: 506 YSYSKSGESLHDMFKSSIPVKIIANQMYVDLLSKYCSEHYSKSLDVLKTKTY 557