BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2176.p         (160 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775210.1| DNA-binding repressor transcription regulato...   196   8e-49
ref|YP_106769.1| putative phage DNA-binding protein [Burkholderi...    78   3e-13
ref|ZP_04890554.1| conserved hypothetical protein [Burkholderia ...    74   8e-12
ref|ZP_02445336.1| putative phage DNA-binding protein [Burkholde...    74   8e-12
ref|YP_001584829.1| XRE family transcriptional regulator [Burkho...    73   2e-11

>ref|YP_003775210.1| DNA-binding repressor transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ63302.1| DNA-binding repressor transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 171

 Score =  196 bits (499), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 100/137 (72%), Positives = 117/137 (85%)

Query: 1   MSSNKSEFLTVLGDRLAQERGRCGHTQKSVADQLDITARTQIKYEIGETAPDAYYLHGLG 60
           MSSNKSE+LT LGDRLA+ER RCGHTQKS+AD LDITARTQIKYEIGETAPDAYYLHGL 
Sbjct: 1   MSSNKSEYLTTLGDRLAKERSRCGHTQKSIADNLDITARTQIKYEIGETAPDAYYLHGLD 60

Query: 61  EIGIDITYVLTGVRGSTPTQQESELIACYRAVDPVLRSSLVQLLSGLSQMAKTGKKKRDL 120
            IGID+TYVLTGVRG+TP+ +ES+LIACYR+VD   RS+L QLL+G++ M +  +KKRD 
Sbjct: 61  AIGIDVTYVLTGVRGATPSPEESQLIACYRSVDKATRSALTQLLAGMADMVRASRKKRDF 120

Query: 121 PAATEAKRIRPGRQRKV 137
            A  E  R+RPGRQRK+
Sbjct: 121 FAVPEEVRVRPGRQRKL 137


>ref|YP_106769.1| putative phage DNA-binding protein [Burkholderia pseudomallei
           K96243]
 emb|CAH34128.1| putative phage DNA-binding protein [Burkholderia pseudomallei
           K96243]
          Length = 167

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/133 (35%), Positives = 78/133 (58%), Gaps = 10/133 (7%)

Query: 3   SNKSEFLTVLGDRLAQERGRCGHTQKSVADQLDITARTQIKYEIGETAPDAYYLHGLGEI 62
           + KS  +  +GDRL +ER R   +Q++ A++  +T +TQ+ YE GE  PDA YL  +   
Sbjct: 10  NTKSNQMVSIGDRLREERKRTSLSQRAFAERGGVTEKTQVLYEKGERVPDAAYLEQVAAA 69

Query: 63  GIDITYVLTGVRGSTPTQQESE-LIACYRAVDPVLRSSLVQLLSGLSQMAKTGKKKRDLP 121
           GID+ YVLTG R ++    + E L+A YR++D   R+ ++ L+ G++Q          +P
Sbjct: 70  GIDVLYVLTGQRNASELSADEEVLLAGYRSLDAKGRAGVLGLIGGMTQ---------QVP 120

Query: 122 AATEAKRIRPGRQ 134
           AA++A + +   Q
Sbjct: 121 AASKATKTKAVHQ 133


>ref|ZP_04890554.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
 gb|EDU11538.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
          Length = 152

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 45/127 (35%), Positives = 75/127 (59%), Gaps = 10/127 (7%)

Query: 9   LTVLGDRLAQERGRCGHTQKSVADQLDITARTQIKYEIGETAPDAYYLHGLGEIGIDITY 68
           +  +GDRL +ER R   +Q++ A++  +T +TQ+ YE GE  PDA YL  +   GID+ Y
Sbjct: 1   MVSIGDRLREERKRTSLSQRAFAERGGVTEKTQVLYEKGERVPDAAYLEQVAAAGIDVLY 60

Query: 69  VLTGVRGSTPTQQESE-LIACYRAVDPVLRSSLVQLLSGLSQMAKTGKKKRDLPAATEAK 127
           VLTG R ++    + E L+A YR++D   R+ ++ L+ G++Q          +PAA++A 
Sbjct: 61  VLTGQRNASELSADEEVLLAGYRSLDAKGRAGVLGLIGGMTQ---------QVPAASKAT 111

Query: 128 RIRPGRQ 134
           + +   Q
Sbjct: 112 KTKAVHQ 118


>ref|ZP_02445336.1| putative phage DNA-binding protein [Burkholderia pseudomallei 91]
          Length = 164

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 45/127 (35%), Positives = 75/127 (59%), Gaps = 10/127 (7%)

Query: 9   LTVLGDRLAQERGRCGHTQKSVADQLDITARTQIKYEIGETAPDAYYLHGLGEIGIDITY 68
           +  +GDRL +ER R   +Q++ A++  +T +TQ+ YE GE  PDA YL  +   GID+ Y
Sbjct: 1   MVSIGDRLREERKRTSLSQRAFAERGGVTEKTQVLYEKGERVPDAAYLEQVAAAGIDVLY 60

Query: 69  VLTGVRGSTPTQQESE-LIACYRAVDPVLRSSLVQLLSGLSQMAKTGKKKRDLPAATEAK 127
           VLTG R ++    + E L+A YR++D   R+ ++ L+ G++Q          +PAA++A 
Sbjct: 61  VLTGQRNASELSADEEVLLAGYRSLDAKGRAGVLGLIGGMTQ---------QVPAASKAT 111

Query: 128 RIRPGRQ 134
           + +   Q
Sbjct: 112 KTKAVHQ 118


>ref|YP_001584829.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC
           17616]
 gb|ABX18537.1| transcriptional regulator, XRE family [Burkholderia multivorans
           ATCC 17616]
          Length = 179

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 76/132 (57%), Gaps = 7/132 (5%)

Query: 5   KSEFLTVLGDRLAQERGRCGHTQKSVADQLDITARTQIKYEIGETAPDAYYLHGLGEIGI 64
           K+  +  +GDRL  ER R   +Q++ A++  +T +TQ+ YE GE  PDA YL  +   G+
Sbjct: 25  KTNRMVSIGDRLRDERKRTSLSQRAFAERGGVTEKTQVLYEKGERVPDAIYLEKIAAAGV 84

Query: 65  DITYVLTGVRGSTPTQQESE-LIACYRAVDPVLRSSLVQLLSGLSQM------AKTGKKK 117
           D+ +VLTG R S     + E L+  YR++D   R+ ++ +++G++Q       AK  K +
Sbjct: 85  DVLFVLTGHRNSAELSPDEEVLVTGYRSLDAKGRAGVLGMIAGMTQQPTESAPAKVAKVR 144

Query: 118 RDLPAATEAKRI 129
           ++   A+  +++
Sbjct: 145 QNFEGASIGQQV 156