BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2172.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775206.1| branched-chain amino acid ABC transporter pe... 457 e-126 ref|YP_004752461.1| inner-membrane translocator [Collimonas fung... 437 e-120 ref|ZP_08273441.1| inner-membrane translocator [Oxalobacteraceae... 416 e-114 ref|YP_523094.1| inner-membrane translocator [Rhodoferax ferrire... 402 e-110 ref|YP_003609339.1| inner-membrane translocator [Burkholderia sp... 378 e-103 >ref|YP_003775206.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63298.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 292/296 (98%), Positives = 295/296 (99%) Query: 1 MDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGALVGLSVVGNIHGG 60 MDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGALVGLSVVGNIHGG Sbjct: 1 MDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGALVGLSVVGNIHGG 60 Query: 61 PYLNYWLMIPIVLVFGALQGMFVEWIGVRPAIKIKSEFGWIMSTIALAIIFKNVAENIWG 120 PYLNYWLMIPIVLVFGALQGMFVEWIGVRPAIKIKSEFGWIMSTIALAIIFKNVAENIWG Sbjct: 61 PYLNYWLMIPIVLVFGALQGMFVEWIGVRPAIKIKSEFGWIMSTIALAIIFKNVAENIWG 120 Query: 121 KDDLPFPSPISGTPFQVFGANVQPMQVLVVIGALLIMAAVELFNRKSIYGKAVVATSNDR 180 KDDLPFPSPISG PFQ+FGANVQPMQVLVV+GALLIMAAVELFNRKSIYGKAVVATSNDR Sbjct: 121 KDDLPFPSPISGAPFQIFGANVQPMQVLVVVGALLIMAAVELFNRKSIYGKAVVATSNDR 180 Query: 181 DAAGLMGINTSMVITFSYALSSATAAFAGVLVAPLTLTGATMGAALGLKAFAVAIIGGLT 240 DAAGLMGINTSMVITFSYALSSATAAFAGVLVAPLTLTGATMGAALGLKAFAVAIIGGLT Sbjct: 181 DAAGLMGINTSMVITFSYALSSATAAFAGVLVAPLTLTGATMGAALGLKAFAVAIIGGLT 240 Query: 241 SGMGAIVGGLILGVAETVTGFYISTGYKEVPGLVLLLLVLAVKPAGLFGKTAIKKV 296 SGMGAIVGGLILGVAET+TGFYISTGYKEVPGLVLLLLVLAVKPAGLFGKTAIKKV Sbjct: 241 SGMGAIVGGLILGVAETLTGFYISTGYKEVPGLVLLLLVLAVKPAGLFGKTAIKKV 296 >ref|YP_004752461.1| inner-membrane translocator [Collimonas fungivorans Ter331] gb|AEK61638.1| inner-membrane translocator [Collimonas fungivorans Ter331] Length = 306 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 277/296 (93%), Positives = 289/296 (97%) Query: 1 MDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGALVGLSVVGNIHGG 60 M+ILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGALVGLS+VGNIHGG Sbjct: 11 MEILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGALVGLSLVGNIHGG 70 Query: 61 PYLNYWLMIPIVLVFGALQGMFVEWIGVRPAIKIKSEFGWIMSTIALAIIFKNVAENIWG 120 PYLNYWLMIP+V+VFGALQG VEWIGVRPA+KIKSEFGWIMSTIALAIIFKNVAENIWG Sbjct: 71 PYLNYWLMIPVVIVFGALQGAVVEWIGVRPALKIKSEFGWIMSTIALAIIFKNVAENIWG 130 Query: 121 KDDLPFPSPISGTPFQVFGANVQPMQVLVVIGALLIMAAVELFNRKSIYGKAVVATSNDR 180 KDDL FPSP+S TPFQVFGANVQPMQV+VV+GAL +M AVE FNRKSIYGKAVVATSNDR Sbjct: 131 KDDLTFPSPLSSTPFQVFGANVQPMQVVVVLGALAMMLAVEFFNRKSIYGKAVVATSNDR 190 Query: 181 DAAGLMGINTSMVITFSYALSSATAAFAGVLVAPLTLTGATMGAALGLKAFAVAIIGGLT 240 DAAGLMGINTSMVITFSYALSSATAAFAGVLVAPLTLTGATMGAALGLKAFAVAIIGGLT Sbjct: 191 DAAGLMGINTSMVITFSYALSSATAAFAGVLVAPLTLTGATMGAALGLKAFAVAIIGGLT 250 Query: 241 SGMGAIVGGLILGVAETVTGFYISTGYKEVPGLVLLLLVLAVKPAGLFGKTAIKKV 296 SGMGA+VGGLILG+AET+TGFYISTGYKEVPGLVLLLLVLAVKPAGLFGKTAIKKV Sbjct: 251 SGMGAVVGGLILGIAETLTGFYISTGYKEVPGLVLLLLVLAVKPAGLFGKTAIKKV 306 >ref|ZP_08273441.1| inner-membrane translocator [Oxalobacteraceae bacterium IMCC9480] gb|EGF33104.1| inner-membrane translocator [Oxalobacteraceae bacterium IMCC9480] Length = 296 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 267/296 (90%), Positives = 283/296 (95%) Query: 1 MDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGALVGLSVVGNIHGG 60 M+I LQLVFSG+ALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGALVGLS+VGNIHGG Sbjct: 1 MEIFLQLVFSGVALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGALVGLSLVGNIHGG 60 Query: 61 PYLNYWLMIPIVLVFGALQGMFVEWIGVRPAIKIKSEFGWIMSTIALAIIFKNVAENIWG 120 PYLNYWLMIP+V+VFGA+QG+FVEWIGVRPAIKIKSEFGWIMSTIALAIIFKNVAENIWG Sbjct: 61 PYLNYWLMIPVVIVFGAMQGVFVEWIGVRPAIKIKSEFGWIMSTIALAIIFKNVAENIWG 120 Query: 121 KDDLPFPSPISGTPFQVFGANVQPMQVLVVIGALLIMAAVELFNRKSIYGKAVVATSNDR 180 KDDLPFP+P+ TPFQV GANVQPMQV+VV+GAL +M AVE+FNRKSIYGKAVVATSNDR Sbjct: 121 KDDLPFPTPLPATPFQVLGANVQPMQVVVVLGALAMMLAVEVFNRKSIYGKAVVATSNDR 180 Query: 181 DAAGLMGINTSMVITFSYALSSATAAFAGVLVAPLTLTGATMGAALGLKAFAVAIIGGLT 240 DAAGLMGINTSMVITFSYALSSATAA AGVL+A LTLTGATMG ALGLKAFAVAIIGGLT Sbjct: 181 DAAGLMGINTSMVITFSYALSSATAALAGVLIATLTLTGATMGTALGLKAFAVAIIGGLT 240 Query: 241 SGMGAIVGGLILGVAETVTGFYISTGYKEVPGLVLLLLVLAVKPAGLFGKTAIKKV 296 SGMG IVGGLILG+AET TGFYISTGYKEVPGLVLLLLVLA+KPAGLFGK IKKV Sbjct: 241 SGMGVIVGGLILGIAETTTGFYISTGYKEVPGLVLLLLVLAIKPAGLFGKATIKKV 296 >ref|YP_523094.1| inner-membrane translocator [Rhodoferax ferrireducens T118] gb|ABD69563.1| inner-membrane translocator [Rhodoferax ferrireducens T118] Length = 296 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 252/296 (85%), Positives = 271/296 (91%) Query: 1 MDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGALVGLSVVGNIHGG 60 M+I LQL++SGIALGMIY VIAFGYQLTFATSGTLNFGQGE+LMLGALVGLS+VG IHGG Sbjct: 1 MEIFLQLIYSGIALGMIYGVIAFGYQLTFATSGTLNFGQGESLMLGALVGLSLVGTIHGG 60 Query: 61 PYLNYWLMIPIVLVFGALQGMFVEWIGVRPAIKIKSEFGWIMSTIALAIIFKNVAENIWG 120 PYLNYWLMIP+V +FGA QG FVEWIGVRPAIKIKSEFGWIMSTIALAIIFKNVAENIWG Sbjct: 61 PYLNYWLMIPLVALFGAAQGAFVEWIGVRPAIKIKSEFGWIMSTIALAIIFKNVAENIWG 120 Query: 121 KDDLPFPSPISGTPFQVFGANVQPMQVLVVIGALLIMAAVELFNRKSIYGKAVVATSNDR 180 KDDL FPSP+ P + GANV PM+++VVIGAL +MA VELFNRKSIYGKAVVATSNDR Sbjct: 121 KDDLKFPSPLPEAPIKFLGANVLPMEIVVVIGALAMMAMVELFNRKSIYGKAVVATSNDR 180 Query: 181 DAAGLMGINTSMVITFSYALSSATAAFAGVLVAPLTLTGATMGAALGLKAFAVAIIGGLT 240 DAA LMGINT VITFSYALSS TAA AGVLVAPLTLTGATMG+ LGLKAFAVAIIGGLT Sbjct: 181 DAASLMGINTGAVITFSYALSSVTAAVAGVLVAPLTLTGATMGSVLGLKAFAVAIIGGLT 240 Query: 241 SGMGAIVGGLILGVAETVTGFYISTGYKEVPGLVLLLLVLAVKPAGLFGKTAIKKV 296 SG+G IVGGLILG+AET TG+YISTGYK+VPGLVLLLLVLA+KPAGLFGK AIKKV Sbjct: 241 SGVGVIVGGLILGIAETTTGYYISTGYKDVPGLVLLLLVLAIKPAGLFGKMAIKKV 296 >ref|YP_003609339.1| inner-membrane translocator [Burkholderia sp. CCGE1002] gb|ADG19828.1| inner-membrane translocator [Burkholderia sp. CCGE1002] Length = 291 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 237/296 (80%), Positives = 265/296 (89%), Gaps = 5/296 (1%) Query: 1 MDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGALVGLSVVGNIHGG 60 M ILLQL++SGIALGMIYAVIAFGYQLTFATSGTLNFGQG+ALMLGALVGL++V Sbjct: 1 MTILLQLIYSGIALGMIYAVIAFGYQLTFATSGTLNFGQGDALMLGALVGLTLVS----- 55 Query: 61 PYLNYWLMIPIVLVFGALQGMFVEWIGVRPAIKIKSEFGWIMSTIALAIIFKNVAENIWG 120 +NYWLMIP+V FG LQG FVE IGVRPAIKIKSEFGWIMSTIAL IIFKNVAEN+WG Sbjct: 56 LGVNYWLMIPLVCAFGLLQGAFVERIGVRPAIKIKSEFGWIMSTIALGIIFKNVAENVWG 115 Query: 121 KDDLPFPSPISGTPFQVFGANVQPMQVLVVIGALLIMAAVELFNRKSIYGKAVVATSNDR 180 +DDL FPSP+ P +VFGANV PM++LVV GAL +M AVE FNRK+I+GKAVVAT+NDR Sbjct: 116 RDDLRFPSPLPEAPLKVFGANVLPMELLVVGGALAMMLAVEFFNRKTIFGKAVVATANDR 175 Query: 181 DAAGLMGINTSMVITFSYALSSATAAFAGVLVAPLTLTGATMGAALGLKAFAVAIIGGLT 240 DAA LMGINT +VITFSYALSS TAAFAGVL+APLTLTGATMGA LGLKAFAVAIIGGLT Sbjct: 176 DAAALMGINTGLVITFSYALSSLTAAFAGVLIAPLTLTGATMGAVLGLKAFAVAIIGGLT 235 Query: 241 SGMGAIVGGLILGVAETVTGFYISTGYKEVPGLVLLLLVLAVKPAGLFGKTAIKKV 296 SG+G +VGG+ILG+AET TGFY+STGYK+VPGLVLLL+VLA+KPAGLFGKT+IKKV Sbjct: 236 SGLGILVGGVILGIAETTTGFYLSTGYKDVPGLVLLLIVLAMKPAGLFGKTSIKKV 291