BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2171.p (383 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775205.1| branched-chain amino acid ABC transporter pe... 692 0.0 ref|YP_004752460.1| ABC branched chain amino acid family transpo... 581 e-164 ref|YP_557335.1| branched chain amino acid ABC transporter perip... 536 e-150 ref|YP_001894558.1| branched-chain amino acid ABC transporter pe... 535 e-150 ref|YP_003609338.1| extracellular ligand-binding receptor [Burkh... 527 e-147 >ref|YP_003775205.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63297.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 383 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 375/383 (97%), Positives = 381/383 (99%) Query: 1 MSYKTQAFVAAALMSLALTSQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAG 60 M+YKTQAFVAAALMSLALTSQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAG Sbjct: 1 MTYKTQAFVAAALMSLALTSQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAG 60 Query: 61 GVLGRQIQLVERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPV 120 G+LGRQIQL+ERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPV Sbjct: 61 GLLGRQIQLIERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPV 120 Query: 121 INNVATGTVITKQFEKEKDNYIFRTSAADKIQAKMIADEAVDKQKFTKVAILADSTNYGQ 180 INNVATGTVITKQFEKEKDNY+FRTSAADKIQAKMIADEAVDKQKFTKVAILADSTNYGQ Sbjct: 121 INNVATGTVITKQFEKEKDNYVFRTSAADKIQAKMIADEAVDKQKFTKVAILADSTNYGQ 180 Query: 181 LGREDLEKVLADKKVTPVAIEKYNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIANG 240 LGREDLEKVLADKKVTPVA+EKYNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIANG Sbjct: 181 LGREDLEKVLADKKVTPVAVEKYNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIANG 240 Query: 241 MEKLNWQVPIIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDGNTPKRKAFIEAYQKAYKV 300 MEKLNW VPIIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDGNTPKRKAFIEAYQKAYKV Sbjct: 241 MEKLNWHVPIIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDGNTPKRKAFIEAYQKAYKV 300 Query: 301 DRMPSAVSAAQGYDSIMLLAAAIKQAGTTDGDKVRAALENLNTKVEGVVTTYDKPFTHDD 360 DRMPSAVSAAQGYDSI+LLAAAIKQAGTTDGDKVRAALENLNTKVEGVVTTYDKPFTHDD Sbjct: 301 DRMPSAVSAAQGYDSILLLAAAIKQAGTTDGDKVRAALENLNTKVEGVVTTYDKPFTHDD 360 Query: 361 HEAIKPGMVVMGEVKNGRVILGK 383 HEAIKP MVVMGEVKNGRVILGK Sbjct: 361 HEAIKPAMVVMGEVKNGRVILGK 383 >ref|YP_004752460.1| ABC branched chain amino acid family transporter, periplasmic ligand binding protein [Collimonas fungivorans Ter331] gb|AEK61637.1| ABC branched chain amino acid family transporter, periplasmic ligand binding protein [Collimonas fungivorans Ter331] Length = 385 Score = 581 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 310/385 (80%), Positives = 346/385 (89%), Gaps = 2/385 (0%) Query: 1 MSYKTQAFVAAALMSLALTSQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAG 60 M+ +A VA AL+S L + AA+PIKIGV+GP+TGGSAPMGVSMRDGVKLAVA+INA G Sbjct: 1 MNTIIKACVATALVSWTLAAGAAEPIKIGVTGPFTGGSAPMGVSMRDGVKLAVADINAKG 60 Query: 61 GVLGRQIQLVERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPV 120 GVLGRQ+QLVERDDEAKNERGVQ+AQELINKEKVV TVGFINTGVALASQRFYQEAKIPV Sbjct: 61 GVLGRQLQLVERDDEAKNERGVQVAQELINKEKVVGTVGFINTGVALASQRFYQEAKIPV 120 Query: 121 INNVATGTVITKQF--EKEKDNYIFRTSAADKIQAKMIADEAVDKQKFTKVAILADSTNY 178 +NNVATG+++TKQF + KDNY+FR +A D IQ+ MI DEAV +QK TKVAILADSTNY Sbjct: 121 MNNVATGSIVTKQFVGPENKDNYVFRNAANDTIQSAMIVDEAVVRQKHTKVAILADSTNY 180 Query: 179 GQLGREDLEKVLADKKVTPVAIEKYNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIA 238 GQLGREDLE+ LA + + PVA+EKYN+KDVDMTAQLLK+KQGGA+ VLTYGIGPELAQIA Sbjct: 181 GQLGREDLERTLAARGIKPVAVEKYNLKDVDMTAQLLKAKQGGAEVVLTYGIGPELAQIA 240 Query: 239 NGMEKLNWQVPIIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDGNTPKRKAFIEAYQKAY 298 NGMEKLNW+VPIIGSW LSMGNFIDN+GKNG+GARMPQTFIQD T KRKAFIEAYQKAY Sbjct: 241 NGMEKLNWKVPIIGSWTLSMGNFIDNAGKNGDGARMPQTFIQDATTAKRKAFIEAYQKAY 300 Query: 299 KVDRMPSAVSAAQGYDSIMLLAAAIKQAGTTDGDKVRAALENLNTKVEGVVTTYDKPFTH 358 K+DRMPSAVSAAQGYDS+ LLAAAIKQAG+TDG KVR ALENLN VEGVVTTY KP++H Sbjct: 301 KIDRMPSAVSAAQGYDSVYLLAAAIKQAGSTDGVKVREALENLNGTVEGVVTTYTKPYSH 360 Query: 359 DDHEAIKPGMVVMGEVKNGRVILGK 383 DDHEAIKP MVV+GEVKNGRV+L K Sbjct: 361 DDHEAIKPNMVVIGEVKNGRVVLAK 385 >ref|YP_557335.1| branched chain amino acid ABC transporter periplasmic ligand-binding protein [Burkholderia xenovorans LB400] ref|ZP_06844789.1| Extracellular ligand-binding receptor [Burkholderia sp. Ch1-1] gb|ABE29283.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Burkholderia xenovorans LB400] gb|EFG67553.1| Extracellular ligand-binding receptor [Burkholderia sp. Ch1-1] Length = 405 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 289/373 (77%), Positives = 322/373 (86%), Gaps = 2/373 (0%) Query: 10 AAALMSLALTSQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAGGVLGRQIQL 69 A AL +LA AADPIKIGV GP+TGGS+ MGVSMRDGV+LA AEIN AGGVLGRQI L Sbjct: 11 ALALCALANVGYAADPIKIGVDGPFTGGSSSMGVSMRDGVRLATAEINKAGGVLGRQIVL 70 Query: 70 VERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPVINNVATGTV 129 VERDDEAKNERGVQIAQELINKEKVVA VG+INTGVALASQRF+QEAKIPV NNVATG+V Sbjct: 71 VERDDEAKNERGVQIAQELINKEKVVAVVGYINTGVALASQRFFQEAKIPVFNNVATGSV 130 Query: 130 ITKQFEKEKDNYIFRTSAADKIQAKMIADEAVDKQKFTKVAILADSTNYGQLGREDLEKV 189 +TKQF + DNY+FR +AAD+IQA MI +EAV ++ F KVAILADSTNYGQLGREDLEK Sbjct: 131 VTKQFTDQPDNYVFRNAAADRIQAPMIVEEAVTRRGFRKVAILADSTNYGQLGREDLEKA 190 Query: 190 LADKKVTPVAIEKYNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIANGMEKLNWQVP 249 LA K V PVA+EK+NIKDVDMTAQLLK+K+ GA+AVLTYGIGPELAQIANGM KL W+VP Sbjct: 191 LAAKGVKPVAVEKFNIKDVDMTAQLLKAKEAGAEAVLTYGIGPELAQIANGMAKLGWKVP 250 Query: 250 IIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDGNTPKRKAFIEAYQKAYKV--DRMPSAV 307 +IGSW LSM N+IDN+ NG GARMPQTFIQ+ NTPKRKAFI+AY K +K +R+ S V Sbjct: 251 LIGSWTLSMANYIDNASTNGEGARMPQTFIQEANTPKRKAFIDAYLKEFKPKNNRIDSPV 310 Query: 308 SAAQGYDSIMLLAAAIKQAGTTDGDKVRAALENLNTKVEGVVTTYDKPFTHDDHEAIKPG 367 SAAQGYDSI LLAAAI QAG+TDG KVRAALENLNTKVEGVV YDKPFTHDDHEAI P Sbjct: 311 SAAQGYDSIYLLAAAITQAGSTDGPKVRAALENLNTKVEGVVMVYDKPFTHDDHEAISPN 370 Query: 368 MVVMGEVKNGRVI 380 + V+GEVK GRV+ Sbjct: 371 VPVVGEVKGGRVV 383 >ref|YP_001894558.1| branched-chain amino acid ABC transporter periplasmic protein [Burkholderia phytofirmans PsJN] gb|ACD15334.1| Extracellular ligand-binding receptor [Burkholderia phytofirmans PsJN] Length = 405 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 288/373 (77%), Positives = 322/373 (86%), Gaps = 2/373 (0%) Query: 10 AAALMSLALTSQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAGGVLGRQIQL 69 A AL +LA S AADPIKIGV GP+TGGS+ MGVSMRDGV+LA AEIN AGGVLGRQI L Sbjct: 11 ALALCALANVSYAADPIKIGVDGPFTGGSSSMGVSMRDGVRLATAEINKAGGVLGRQIVL 70 Query: 70 VERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPVINNVATGTV 129 VERDDEAKNERGVQIAQELINKEKVVA VG+INTGVALASQRF+QEAKIPV NNVATG++ Sbjct: 71 VERDDEAKNERGVQIAQELINKEKVVAVVGYINTGVALASQRFFQEAKIPVFNNVATGSI 130 Query: 130 ITKQFEKEKDNYIFRTSAADKIQAKMIADEAVDKQKFTKVAILADSTNYGQLGREDLEKV 189 +TKQF + DNY+FR +AAD+IQA MI +EAV K+ F KVAILADSTNYGQLGREDLEK Sbjct: 131 VTKQFTDQPDNYVFRNAAADRIQAPMIVEEAVTKRGFKKVAILADSTNYGQLGREDLEKA 190 Query: 190 LADKKVTPVAIEKYNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIANGMEKLNWQVP 249 LA K V PVA+EK+NIKDVDMTAQLLK+K+ GA+AVLTYGIGPELAQIANGM KL W+VP Sbjct: 191 LAAKGVKPVAVEKFNIKDVDMTAQLLKAKEAGAEAVLTYGIGPELAQIANGMAKLGWKVP 250 Query: 250 IIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDGNTPKRKAFIEAYQKAYKV--DRMPSAV 307 +IGSW LSM N+IDN+ NG GARMPQTFIQ+ NTPKRK FI+AY K +K +R+ S V Sbjct: 251 LIGSWTLSMANYIDNASTNGEGARMPQTFIQEANTPKRKTFIDAYLKEFKPKNNRIDSPV 310 Query: 308 SAAQGYDSIMLLAAAIKQAGTTDGDKVRAALENLNTKVEGVVTTYDKPFTHDDHEAIKPG 367 SAAQGYDS+ LLAAAI QAG+TDG KVRAALENLNTKVEGVV YDKPFTHDDHEAI P Sbjct: 311 SAAQGYDSVYLLAAAITQAGSTDGPKVRAALENLNTKVEGVVMVYDKPFTHDDHEAISPN 370 Query: 368 MVVMGEVKNGRVI 380 + V+GEVK GRV+ Sbjct: 371 VPVVGEVKGGRVV 383 >ref|YP_003609338.1| extracellular ligand-binding receptor [Burkholderia sp. CCGE1002] gb|ADG19827.1| Extracellular ligand-binding receptor [Burkholderia sp. CCGE1002] Length = 404 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 285/383 (74%), Positives = 325/383 (84%), Gaps = 3/383 (0%) Query: 1 MSYKTQAFVAA-ALMSLALTSQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAA 59 M + ++ V+A AL +L S AADPIKIGV GP+TGGS+ MGVSMRDGV+LA AEIN A Sbjct: 1 MGIRLKSVVSALALCALIDVSYAADPIKIGVDGPFTGGSSSMGVSMRDGVRLATAEINKA 60 Query: 60 GGVLGRQIQLVERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIP 119 GGVLGRQI LVERDDEAKNERGVQIAQELINKEKV A VG+INTGVALASQRF+QEAKIP Sbjct: 61 GGVLGRQIVLVERDDEAKNERGVQIAQELINKEKVAAVVGYINTGVALASQRFFQEAKIP 120 Query: 120 VINNVATGTVITKQFEKEKDNYIFRTSAADKIQAKMIADEAVDKQKFTKVAILADSTNYG 179 V NNVATG+V+TKQF + DNY+FR +AAD+IQA MI +EA+ K+ F KVAILADSTNYG Sbjct: 121 VFNNVATGSVLTKQFTDQPDNYVFRNAAADRIQAPMIVEEAIVKRGFKKVAILADSTNYG 180 Query: 180 QLGREDLEKVLADKKVTPVAIEKYNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIAN 239 QLGREDLEK L K V PVA+EK+NIKDVDMTAQLLK+K+ GA+AVLTYGIGPELAQIAN Sbjct: 181 QLGREDLEKALGTKGVKPVAVEKFNIKDVDMTAQLLKAKEAGAEAVLTYGIGPELAQIAN 240 Query: 240 GMEKLNWQVPIIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDGNTPKRKAFIEAYQKAYK 299 GM KL W+VP++GSW LSM N+IDN+ NG GARMPQTFIQ+ NTPKRKAFI+AY K +K Sbjct: 241 GMAKLGWKVPLVGSWTLSMANYIDNASTNGEGARMPQTFIQEANTPKRKAFIDAYLKEFK 300 Query: 300 V--DRMPSAVSAAQGYDSIMLLAAAIKQAGTTDGDKVRAALENLNTKVEGVVTTYDKPFT 357 +R+ SAVSAAQGYDS+ LLAAA+ QAG+ +G KVRAALENLN KVEGVV YDKPFT Sbjct: 301 PKNNRIESAVSAAQGYDSVYLLAAAMTQAGSIEGPKVRAALENLNGKVEGVVMVYDKPFT 360 Query: 358 HDDHEAIKPGMVVMGEVKNGRVI 380 HDDHEAI P + V+GEVK GRVI Sbjct: 361 HDDHEAISPNVPVVGEVKGGRVI 383