BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2170.p         (150 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775204.1| thioesterase [Herbaspirillum seropedicae SmR...   269   1e-70
ref|YP_004752263.1| thioesterase superfamily [Collimonas fungivo...   154   6e-36
ref|YP_003643363.1| thioesterase superfamily protein [Thiomonas ...   141   4e-32
gb|EGW61044.1| thioesterase superfamily protein [Dechlorosoma su...   136   9e-31
ref|YP_285153.1| thioesterase superfamily protein [Dechloromonas...   134   6e-30

>ref|YP_003775204.1| thioesterase [Herbaspirillum seropedicae SmR1]
 gb|ADJ63296.1| thioesterase protein [Herbaspirillum seropedicae SmR1]
          Length = 141

 Score =  269 bits (687), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 126/141 (89%), Positives = 132/141 (93%)

Query: 10  MSSHEATASKPLYVSQQRIRWGDMDAFGHVNNTLYFRFMEQCRIEWLEEVFGPTIAGEEG 69
           MSSH    SK LY+S+Q IRWGDMDAFGHVNNT+YFRFMEQCRIEWLEEVFGPTIAGEEG
Sbjct: 1   MSSHPQANSKQLYLSRQTIRWGDMDAFGHVNNTVYFRFMEQCRIEWLEEVFGPTIAGEEG 60

Query: 70  PVIVNAHCNFRRQMKYPASILVQMGAGHLGRTSVETTYVIRDAADEQIIYADGAAKIVWV 129
           PVIVNAHCNFRRQMKYPA I V+M AGHLGRTSVETTY+IRDAADEQIIYADGAAKIVWV
Sbjct: 61  PVIVNAHCNFRRQMKYPARICVEMSAGHLGRTSVETTYIIRDAADEQIIYADGAAKIVWV 120

Query: 130 DFKKEKSTALPEKLRQLLTSL 150
           DFKKEKSTALPE+LRQLLTSL
Sbjct: 121 DFKKEKSTALPEQLRQLLTSL 141


>ref|YP_004752263.1| thioesterase superfamily [Collimonas fungivorans Ter331]
 gb|AEK61440.1| thioesterase superfamily [Collimonas fungivorans Ter331]
          Length = 139

 Score =  154 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 94/131 (71%), Gaps = 1/131 (0%)

Query: 19  KPLYVSQQRIRWGDMDAFGHVNNTLYFRFMEQCRIEWLEEVFGPTIAGEEGPVIVNAHCN 78
           K ++ ++  +RWGDMDA GHVNNT+YFR+MEQ RIEWL ++ G       GPV+VNA C+
Sbjct: 5   KHIHTTRIAMRWGDMDALGHVNNTVYFRYMEQARIEWLLQI-GSDFDSRHGPVLVNAQCS 63

Query: 79  FRRQMKYPASILVQMGAGHLGRTSVETTYVIRDAADEQIIYADGAAKIVWVDFKKEKSTA 138
           F RQ+KYP  + V+   G +GR+S E +Y IR A   ++++A+G AKIVWVDF  EKS  
Sbjct: 64  FLRQLKYPCEVEVKSYIGAVGRSSFEASYEIRRADLPEVVFAEGTAKIVWVDFDLEKSIP 123

Query: 139 LPEKLRQLLTS 149
           LPE LRQLLT+
Sbjct: 124 LPEDLRQLLTN 134


>ref|YP_003643363.1| thioesterase superfamily protein [Thiomonas intermedia K12]
 emb|CAZ88738.1| putative Thioesterase [Thiomonas sp. 3As]
 gb|ADG31033.1| thioesterase superfamily protein [Thiomonas intermedia K12]
          Length = 145

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 62/121 (51%), Positives = 82/121 (67%)

Query: 28  IRWGDMDAFGHVNNTLYFRFMEQCRIEWLEEVFGPTIAGEEGPVIVNAHCNFRRQMKYPA 87
           IRWGDMD  GHVNNT+YFR+ME  R+EWL E   P      GPVIVNA CNF+ ++KYP 
Sbjct: 19  IRWGDMDVMGHVNNTIYFRYMEIIRLEWLRETGVPANPAGLGPVIVNAFCNFQIELKYPG 78

Query: 88  SILVQMGAGHLGRTSVETTYVIRDAADEQIIYADGAAKIVWVDFKKEKSTALPEKLRQLL 147
            +L ++    +GRTS +T  ++    D   IYA G +++VWVDF + KS  LP++LR+LL
Sbjct: 79  EVLARLYTTDVGRTSFDTYTLLSRTDDPDTIYASGGSRVVWVDFPRRKSAPLPDRLRELL 138

Query: 148 T 148
           T
Sbjct: 139 T 139


>gb|EGW61044.1| thioesterase superfamily protein [Dechlorosoma suillum PS]
          Length = 136

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 68/138 (49%), Positives = 88/138 (63%), Gaps = 7/138 (5%)

Query: 16  TASKPLYVSQQRIRWGDMDAFGHVNNTLYFRFMEQCRIEWLEEV---FGPTIAGEEGPVI 72
           T  K +  S   IRWGDMDA+GHVNNT+YFR+MEQ R EWLE++    GP     EGPVI
Sbjct: 3   TKRKLILTSHIPIRWGDMDAYGHVNNTVYFRYMEQARCEWLEQLGYTVGPV---GEGPVI 59

Query: 73  VNAHCNFRRQMKYPASILVQMGAGHLGRTSVETTYVIRDAADEQIIYADGAAKIVWVDFK 132
           VNA C F   + YP ++ V++ AGH GR+S+ T Y +R   D+  +YA G +K+VW+D  
Sbjct: 60  VNASCTFLLPLTYPGTVEVKLFAGHPGRSSIPTHYELRLVGDDT-LYATGESKVVWIDTG 118

Query: 133 KEKSTALPEKLRQLLTSL 150
             KS  +PE LR  L  L
Sbjct: 119 SGKSAPIPESLRACLQDL 136


>ref|YP_285153.1| thioesterase superfamily protein [Dechloromonas aromatica RCB]
 gb|AAZ46683.1| Thioesterase superfamily [Dechloromonas aromatica RCB]
          Length = 136

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 61/131 (46%), Positives = 92/131 (70%), Gaps = 1/131 (0%)

Query: 19  KPLYVSQQRIRWGDMDAFGHVNNTLYFRFMEQCRIEWLEEVFGPTIAGEEGPVIVNAHCN 78
           K ++V++  IRWGDMDA+GHVNNT+YFR+MEQ R+EW+EE+  P   G +GPVI+NA C 
Sbjct: 6   KLIHVTKMPIRWGDMDAYGHVNNTIYFRYMEQARVEWIEEMKVPVRPGGDGPVIINASCT 65

Query: 79  FRRQMKYPASILVQMGAGHLGRTSVETTYVIRDAADEQIIYADGAAKIVWVDFKKEKSTA 138
           F   M YP  + V+   G +GR+S +T   +R   D++ +YA+GAAK+VW++ +  KS  
Sbjct: 66  FMIPMTYPGMVEVRTYVGAIGRSSFQTYVEMRIEGDDK-LYAEGAAKVVWMNTQTGKSVP 124

Query: 139 LPEKLRQLLTS 149
           +P+ +R +L +
Sbjct: 125 VPDHVRAVLEA 135