BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2166.p (502 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775200.1| NADH-ubiquinone oxidoreductase subunit N [He... 829 0.0 ref|YP_004752259.1| NADH-ubiquinone oxidoreductase subunit N [Co... 642 0.0 ref|YP_001353165.1| NADH dehydrogenase I chain N [Janthinobacter... 613 e-173 ref|YP_001100093.1| NADH dehydrogenase I subunit N [Herminiimona... 598 e-168 ref|ZP_08274721.1| NADH-ubiquinone oxidoreductase chain N [Oxalo... 596 e-168 >ref|YP_003775200.1| NADH-ubiquinone oxidoreductase subunit N [Herbaspirillum seropedicae SmR1] gb|ADJ63292.1| NADH-ubiquinone (chain N) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 502 Score = 829 bits (2142), Expect = 0.0, Method: Composition-based stats. Identities = 496/502 (98%), Positives = 499/502 (99%) Query: 1 MNNMNLIPVYPEIFLLIATSAILLIDMFLPESKRVITYLLSLAALVVCAVLTFADLNTGA 60 MNNMNLIPVYPEIFLLIATSAILLIDMFLPESKRVITYLLSLAALVVCAVLTFADLN+GA Sbjct: 1 MNNMNLIPVYPEIFLLIATSAILLIDMFLPESKRVITYLLSLAALVVCAVLTFADLNSGA 60 Query: 61 TVYTFNNMFVSDPLANLLKLFTYLGVGVTLIYSRQYNTARGITGGPLGGEYYALALFALL 120 TVYTFNNMFVSDPLANLLKLFTYLGVGVTLIYSRQYNTARGITGG LGGEYYALALFALL Sbjct: 61 TVYTFNNMFVSDPLANLLKLFTYLGVGVTLIYSRQYNTARGITGGMLGGEYYALALFALL 120 Query: 121 GQMVMISGNSFLSIYLGLELMSLSLYALVALRRDHAASTEAGMKYFILGALASGFLLYGM 180 GQMVMISGNSFLSIYLGLELMSLSLYALVALRRDHAASTEAGMKYFILGALASGFLLYGM Sbjct: 121 GQMVMISGNSFLSIYLGLELMSLSLYALVALRRDHAASTEAGMKYFILGALASGFLLYGM 180 Query: 181 SMLYGATGGALELNEVFRAIVSGTVDRTPLVFGIVFVVAGLAFKLGAVPFHMWVPDVYQG 240 SMLYGATGGALELNEVFRAIVSGTVDRTPLVFGIVFVVAGLAFKLGAVPFHMWVPDVYQG Sbjct: 181 SMLYGATGGALELNEVFRAIVSGTVDRTPLVFGIVFVVAGLAFKLGAVPFHMWVPDVYQG 240 Query: 241 SPTPVTLLLGAAPKLATFAITFRLLVEGMLPLAVDWQQMLMVLAVLSIILGNVTAIAQTN 300 SPTPVTLLLGAAPKLATFAITFRLLVEGMLPLAVDWQQMLMVLAVLSIILGNVTAIAQTN Sbjct: 241 SPTPVTLLLGAAPKLATFAITFRLLVEGMLPLAVDWQQMLMVLAVLSIILGNVTAIAQTN 300 Query: 301 IKRMLAYSTISHMGFMLLGMMSGVVDGNLFSAVNAYSSSLFYAVTYVITTLGSFGVIILL 360 IKRMLAYSTISHMGFMLLGMMSGVVDGNLFSAVNAYSSSLFYAVTYVITTLGSFGVIILL Sbjct: 301 IKRMLAYSTISHMGFMLLGMMSGVVDGNLFSAVNAYSSSLFYAVTYVITTLGSFGVIILL 360 Query: 361 SRSGFEADTLDDFKGLNQRSPWFAAVMMIMMFSLAGIPPLVGFYAKLSVLQAAMATGQIW 420 SRSGFEADTLDDFKGLNQRSPWFAAVMMIMMFSLAGIPPLVGFYAKLSVLQAAMATGQIW Sbjct: 361 SRSGFEADTLDDFKGLNQRSPWFAAVMMIMMFSLAGIPPLVGFYAKLSVLQAAMATGQIW 420 Query: 421 LPVLAVVFSLIGAFYYIRVVKVMYFDEPTDTSKIVATPEMRVVLSLNGIAALAIGLWPGH 480 LPVLAV+FSLIGAFYYIRVVKVMYFDEP D SKIVATPEMRVVLSLNGIAALAIGLWPGH Sbjct: 421 LPVLAVIFSLIGAFYYIRVVKVMYFDEPADNSKIVATPEMRVVLSLNGIAALAIGLWPGH 480 Query: 481 LMDACTNAIVSTLATFLSKVVA 502 LMDACTNAIV+TLATFLSKVVA Sbjct: 481 LMDACTNAIVTTLATFLSKVVA 502 >ref|YP_004752259.1| NADH-ubiquinone oxidoreductase subunit N [Collimonas fungivorans Ter331] gb|AEK61436.1| NADH-ubiquinone oxidoreductase chain N [Collimonas fungivorans Ter331] Length = 503 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 374/503 (74%), Positives = 442/503 (87%), Gaps = 3/503 (0%) Query: 1 MNNMNLIPVYPEIFLLIATSAILLIDMFLPESKRVITYLLSLAALVVCAVLTFADLNTGA 60 MNNMNLIPVYPEIFLLIATS +LLIDMF+ ++KR +TY L+LA L VC VLTF +G Sbjct: 1 MNNMNLIPVYPEIFLLIATSVVLLIDMFVSDAKRYLTYYLTLAVLAVCFVLTFGAFQSGE 60 Query: 61 TVYTFNNMFVSDPLANLLKLFTYLGVGVTLIYSRQYNTARGITGGPLGGEYYALALFALL 120 TVYTF+NMFVSDPL++LLKL +Y+ V +TL+YSR+Y + RG+ GG LGGE+Y LALF LL Sbjct: 61 TVYTFHNMFVSDPLSSLLKLVSYVAVAITLVYSRRYVSERGMVGGHLGGEFYPLALFTLL 120 Query: 121 GQMVMISGNSFLSIYLGLELMSLSLYALVALRRDHAASTEAGMKYFILGALASGFLLYGM 180 GQMVMISG++FLSIYLGLELMSLSLYALVALRRD A +TEA MKYF+LGA+ASGFLLYGM Sbjct: 121 GQMVMISGSNFLSIYLGLELMSLSLYALVALRRDSAGATEAAMKYFVLGAMASGFLLYGM 180 Query: 181 SMLYGATGGALELNEVFRAIVSGTVDRTPLVFGIVFVVAGLAFKLGAVPFHMWVPDVYQG 240 SMLYGATG +L+L EV RA SG ++ T L+FG+VF+VAGLAFKLGAVPFHMWVPDVYQG Sbjct: 181 SMLYGATG-SLDLIEVTRAASSGGINPTVLLFGVVFIVAGLAFKLGAVPFHMWVPDVYQG 239 Query: 241 SPTPVTLLLGAAPKLATFAITFRLLVEGMLPLAVDWQQMLMVLAVLSIILGNVTAIAQTN 300 +PT VTLLLG APKLA FAI FRLLVE +LPLA DWQQML VLAVLS+ +GN+TAIAQTN Sbjct: 240 APTAVTLLLGGAPKLAAFAICFRLLVEALLPLATDWQQMLTVLAVLSMAIGNITAIAQTN 299 Query: 301 IKRMLAYSTISHMGFMLLGMMSGVVDGNLFSAVNAYSSSLFYAVTYVITTLGSFGVIILL 360 IKRMLAYSTISHMGFMLLG+++GVVDGNLFS NAYSS++FYA+TYV+TTLG+FGVI+LL Sbjct: 300 IKRMLAYSTISHMGFMLLGLLAGVVDGNLFSTANAYSSAMFYAITYVMTTLGTFGVIMLL 359 Query: 361 SRSGFEADTLDDFKGLNQRSPWFAAVMMIMMFSLAGIPPLVGFYAKLSVLQAAMAT--GQ 418 +RSGFEA+ +DDFKGLNQRSPWFAAVM+++M SLAGIPP++GFYAKLSVLQA + T GQ Sbjct: 360 ARSGFEAENMDDFKGLNQRSPWFAAVMLVLMLSLAGIPPMMGFYAKLSVLQAVLGTGSGQ 419 Query: 419 IWLPVLAVVFSLIGAFYYIRVVKVMYFDEPTDTSKIVATPEMRVVLSLNGIAALAIGLWP 478 +WL ++AV+FSLIGAFYY+RV+K+MYFDEP D+S IVA ++RV+LSLNG+A L +GLWP Sbjct: 420 LWLVIVAVLFSLIGAFYYLRVIKLMYFDEPQDSSPIVAHLDVRVLLSLNGLAVLVLGLWP 479 Query: 479 GHLMDACTNAIVSTLATFLSKVV 501 G LMDA T AIV TL +FL +VV Sbjct: 480 GWLMDATTAAIVKTLTSFLGRVV 502 >ref|YP_001353165.1| NADH dehydrogenase I chain N [Janthinobacterium sp. Marseille] gb|ABR88772.1| NADH dehydrogenase I chain N [Janthinobacterium sp. Marseille] Length = 494 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 356/495 (71%), Positives = 424/495 (85%), Gaps = 1/495 (0%) Query: 1 MNNMNLIPVYPEIFLLIATSAILLIDMFLPESKRVITYLLSLAALVVCAVLTFADLNTGA 60 MNN+NLIPV PEIFL IA AILLID+FL + KR ITY+LS+ AL+VC VL+ +D NTGA Sbjct: 1 MNNLNLIPVLPEIFLAIAICAILLIDLFLKDEKRHITYVLSIIALLVCGVLSLSDFNTGA 60 Query: 61 TVYTFNNMFVSDPLANLLKLFTYLGVGVTLIYSRQYNTARGITGGPLGGEYYALALFALL 120 TVYTFNNMFVSDP+++LLK+ +Y+ VG+TL+YSRQY R + G LGGE+Y LALF+LL Sbjct: 61 TVYTFNNMFVSDPMSSLLKICSYVAVGLTLVYSRQYGLDREMVNGRLGGEFYLLALFSLL 120 Query: 121 GQMVMISGNSFLSIYLGLELMSLSLYALVALRRDHAASTEAGMKYFILGALASGFLLYGM 180 GQMVMIS N+FL IYLGLELMSLSLYALVA+RRDHA STEA MKYFILGALASGFLLYG+ Sbjct: 121 GQMVMISANNFLIIYLGLELMSLSLYALVAMRRDHAISTEAAMKYFILGALASGFLLYGI 180 Query: 181 SMLYGATGGALELNEVFRAIVSGTVDRTPLVFGIVFVVAGLAFKLGAVPFHMWVPDVYQG 240 SMLYGATG +L+L EV RA +GTV++ L+FG+VF+V+GLAFKLG VPFHMWVPDVYQG Sbjct: 181 SMLYGATG-SLDLTEVARATAAGTVNKPILIFGLVFLVSGLAFKLGVVPFHMWVPDVYQG 239 Query: 241 SPTPVTLLLGAAPKLATFAITFRLLVEGMLPLAVDWQQMLMVLAVLSIILGNVTAIAQTN 300 +PT VTLLLG APKLA FAIT RLLVEG+ LAVDWQQML +LAVLS+ +GNVTAI QTN Sbjct: 240 APTSVTLLLGGAPKLAAFAITIRLLVEGLPALAVDWQQMLTILAVLSMAIGNVTAIVQTN 299 Query: 301 IKRMLAYSTISHMGFMLLGMMSGVVDGNLFSAVNAYSSSLFYAVTYVITTLGSFGVIILL 360 IKRMLAYSTIS MGF+LLG++SGVV G S N YS+++FY++TYV+TTLG FGVI+LL Sbjct: 300 IKRMLAYSTISQMGFILLGLLSGVVVGADGSTTNGYSAAMFYSITYVLTTLGIFGVIMLL 359 Query: 361 SRSGFEADTLDDFKGLNQRSPWFAAVMMIMMFSLAGIPPLVGFYAKLSVLQAAMATGQIW 420 SR+GFEAD +DDFKGLNQRSPWFA V +++MFSLAG+PP+VGFYAKLSVLQA ++TGQIW Sbjct: 360 SRAGFEADNIDDFKGLNQRSPWFALVTLMLMFSLAGVPPVVGFYAKLSVLQAVLSTGQIW 419 Query: 421 LPVLAVVFSLIGAFYYIRVVKVMYFDEPTDTSKIVATPEMRVVLSLNGIAALAIGLWPGH 480 L ++AV+FSLIGA+YY+R+VKVMYFDEP D SKIV + ++ V LS+NG + L +GL PG Sbjct: 420 LAIVAVLFSLIGAYYYLRIVKVMYFDEPLDNSKIVVSKDVTVALSVNGASLLVLGLVPGP 479 Query: 481 LMDACTNAIVSTLAT 495 LM AC AIV TLA+ Sbjct: 480 LMTACAAAIVKTLAS 494 >ref|YP_001100093.1| NADH dehydrogenase I subunit N [Herminiimonas arsenicoxydans] sp|A4G631|NUON_HERAR RecName: Full=NADH-quinone oxidoreductase subunit N; AltName: Full=NADH dehydrogenase I subunit N; AltName: Full=NDH-1 subunit N emb|CAL61968.1| NADH-ubiquinone oxidoreductase, chain N [Herminiimonas arsenicoxydans] Length = 494 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 346/495 (69%), Positives = 418/495 (84%), Gaps = 1/495 (0%) Query: 1 MNNMNLIPVYPEIFLLIATSAILLIDMFLPESKRVITYLLSLAALVVCAVLTFADLNTGA 60 MNN+NLIPV PEIFL AT AILLID+FL ++KR +TY+LSLA LVVCAVL+ +D N GA Sbjct: 1 MNNLNLIPVIPEIFLAAATCAILLIDLFLSDAKRYLTYVLSLATLVVCAVLSLSDFNAGA 60 Query: 61 TVYTFNNMFVSDPLANLLKLFTYLGVGVTLIYSRQYNTARGITGGPLGGEYYALALFALL 120 T Y+F NMFVSDP++NLLK TY+ VG+TL+YSRQY R + G LGGE+Y L+LF +L Sbjct: 61 TSYSFGNMFVSDPMSNLLKFCTYIAVGLTLVYSRQYLEDRQMVNGRLGGEFYILSLFTVL 120 Query: 121 GQMVMISGNSFLSIYLGLELMSLSLYALVALRRDHAASTEAGMKYFILGALASGFLLYGM 180 GQMVM+S N+FL IYLGLE+MSLSLYALVA RRD+A + EA MKYF+LGALASGFLLYG+ Sbjct: 121 GQMVMMSANNFLIIYLGLEIMSLSLYALVAFRRDNAVAIEAAMKYFVLGALASGFLLYGI 180 Query: 181 SMLYGATGGALELNEVFRAIVSGTVDRTPLVFGIVFVVAGLAFKLGAVPFHMWVPDVYQG 240 SMLYGATG +L+L EV R I +G V++ L+FG+VFVVAGLAFKLGAVPFHMWVPDVYQG Sbjct: 181 SMLYGATG-SLDLTEVARVIATGAVNKPVLIFGLVFVVAGLAFKLGAVPFHMWVPDVYQG 239 Query: 241 SPTPVTLLLGAAPKLATFAITFRLLVEGMLPLAVDWQQMLMVLAVLSIILGNVTAIAQTN 300 +PT VTL+LG APKLA FAIT RLLVE + LA+DWQQML +L+VLS+ +GN+TAI QTN Sbjct: 240 APTAVTLMLGGAPKLAAFAITIRLLVEALPALAIDWQQMLTILSVLSMAIGNITAIMQTN 299 Query: 301 IKRMLAYSTISHMGFMLLGMMSGVVDGNLFSAVNAYSSSLFYAVTYVITTLGSFGVIILL 360 IKRMLAYSTIS +GF+LLG++SGVV G S N Y +++FY +TYV+TTLG FGVI+LL Sbjct: 300 IKRMLAYSTISQVGFILLGLLSGVVAGADGSTTNGYGAAMFYVITYVLTTLGMFGVIMLL 359 Query: 361 SRSGFEADTLDDFKGLNQRSPWFAAVMMIMMFSLAGIPPLVGFYAKLSVLQAAMATGQIW 420 SR+GFEAD +DDFKGLNQRSPWFA V +++MFSLAG+PP+VGFYAKL+VLQA ++TGQIW Sbjct: 360 SRAGFEADNIDDFKGLNQRSPWFAFVTLLLMFSLAGVPPVVGFYAKLAVLQAVLSTGQIW 419 Query: 421 LPVLAVVFSLIGAFYYIRVVKVMYFDEPTDTSKIVATPEMRVVLSLNGIAALAIGLWPGH 480 L V+AV+FSLIGAFYY+RVVKVMYFDEP D +KIVA+ ++ V LS+NG A LA+GL PG Sbjct: 420 LAVVAVLFSLIGAFYYLRVVKVMYFDEPADKAKIVASKDVTVTLSINGAALLALGLVPGP 479 Query: 481 LMDACTNAIVSTLAT 495 LM AC AI+ TLA+ Sbjct: 480 LMTACAAAIIKTLAS 494 >ref|ZP_08274721.1| NADH-ubiquinone oxidoreductase chain N [Oxalobacteraceae bacterium IMCC9480] gb|EGF31795.1| NADH-ubiquinone oxidoreductase chain N [Oxalobacteraceae bacterium IMCC9480] Length = 497 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 348/494 (70%), Positives = 416/494 (84%), Gaps = 1/494 (0%) Query: 4 MNLIPVYPEIFLLIATSAILLIDMFLPESKRVITYLLSLAALVVCAVLTFADLNTGATVY 63 MNLIP+ PE+ LL+ATS ILLIDMFL + +R +TY+LSL L VCAV ++ L +G T+Y Sbjct: 1 MNLIPLLPEVILLVATSLILLIDMFLSDKQRNVTYVLSLITLAVCAVFSYVYLISGETIY 60 Query: 64 TFNNMFVSDPLANLLKLFTYLGVGVTLIYSRQYNTARGITGGPLGGEYYALALFALLGQM 123 F+NM V DP AN++KLF+YL VGVTL+YSR Y +RGI LGGE+Y LALF+LLGQ+ Sbjct: 61 LFSNMVVVDPFANMMKLFSYLAVGVTLVYSRHYVASRGIVNDRLGGEFYVLALFSLLGQL 120 Query: 124 VMISGNSFLSIYLGLELMSLSLYALVALRRDHAASTEAGMKYFILGALASGFLLYGMSML 183 VMIS ++ L IYLGLELMSLSLYALVALRRDH+ STEA MKYFILGALASGFLLYGMSML Sbjct: 121 VMISASNLLIIYLGLELMSLSLYALVALRRDHSQSTEAAMKYFILGALASGFLLYGMSML 180 Query: 184 YGATGGALELNEVFRAIVSGTVDRTPLVFGIVFVVAGLAFKLGAVPFHMWVPDVYQGSPT 243 YGATG +L+L+++ + +SGT +RT LVFGIVF+VAGLAFKLG VPFHMWVPDVYQG+PT Sbjct: 181 YGATG-SLDLSDIVKGSMSGTANRTILVFGIVFIVAGLAFKLGVVPFHMWVPDVYQGAPT 239 Query: 244 PVTLLLGAAPKLATFAITFRLLVEGMLPLAVDWQQMLMVLAVLSIILGNVTAIAQTNIKR 303 VTLLLG APKLATF IT RLLVEG+LPLA DWQQML+VLA S+ +GN+TAI QTN+KR Sbjct: 240 AVTLLLGGAPKLATFVITLRLLVEGLLPLAFDWQQMLLVLAGASLAIGNITAIVQTNLKR 299 Query: 304 MLAYSTISHMGFMLLGMMSGVVDGNLFSAVNAYSSSLFYAVTYVITTLGSFGVIILLSRS 363 MLAYSTI+ MGF+LLG+ SGV DGN FSAVNAYSS++FY +TYV+TTLG+FG+++LLSR Sbjct: 300 MLAYSTIAQMGFVLLGLASGVTDGNGFSAVNAYSSAMFYTITYVMTTLGTFGIMLLLSRK 359 Query: 364 GFEADTLDDFKGLNQRSPWFAAVMMIMMFSLAGIPPLVGFYAKLSVLQAAMATGQIWLPV 423 GFEA+ +DD KGLNQRSPWFA VM++ M SLAGIPP++GFYAKLSVLQA + TG IWL V Sbjct: 360 GFEAENIDDLKGLNQRSPWFALVMLLFMLSLAGIPPMMGFYAKLSVLQAVLGTGHIWLAV 419 Query: 424 LAVVFSLIGAFYYIRVVKVMYFDEPTDTSKIVATPEMRVVLSLNGIAALAIGLWPGHLMD 483 LAV FSLIGA+YY+RV+KVMYFDEP T KIVA+ +MRV+LSLNGIA +A+GL PG LM Sbjct: 420 LAVFFSLIGAYYYLRVIKVMYFDEPVSTEKIVASTDMRVILSLNGIAVVALGLMPGALMT 479 Query: 484 ACTNAIVSTLATFL 497 AC A+ +L F+ Sbjct: 480 ACETAMGLSLRAFV 493