BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2165.p (496 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775199.1| transmembrane NADH dehydrogenase I subunit M... 826 0.0 ref|YP_004752258.1| NADH-ubiquinone oxidoreductase subunit M [Co... 676 0.0 ref|YP_001353164.1| NADH dehydrogenase I chain M [Janthinobacter... 673 0.0 ref|YP_001100094.1| NADH dehydrogenase I subunit M [Herminiimona... 671 0.0 ref|ZP_08274720.1| NADH-ubiquinone oxidoreductase chain M [Oxalo... 657 0.0 >ref|YP_003775199.1| transmembrane NADH dehydrogenase I subunit M [Herbaspirillum seropedicae SmR1] gb|ADJ63291.1| transmembrane NADH dehydrogenase I (chain M) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 496 Score = 826 bits (2133), Expect = 0.0, Method: Composition-based stats. Identities = 488/496 (98%), Positives = 494/496 (99%) Query: 1 MMQSTFPILSLAIWVPIVFGILVLALGRDSNPGLTRWLALFGSLVGLVVTFPLIQHFDPL 60 MMQSTFPILSLAIWVPIVFGILVLALGRDSNPGL RWLALFGSLVGLVVTFPLIQHFDPL Sbjct: 1 MMQSTFPILSLAIWVPIVFGILVLALGRDSNPGLARWLALFGSLVGLVVTFPLIQHFDPL 60 Query: 61 AHGYQFVEKTPWIDRFSISYFLGLDGISLWFVPLTAFITVIVVLAGWVVIQKRVAQYMGA 120 AHGYQFVEKTPWIDRF+ISYFLGLDGISLWFVPLTAFITVIVVLAGWVVIQKRVAQYMGA Sbjct: 61 AHGYQFVEKTPWIDRFNISYFLGLDGISLWFVPLTAFITVIVVLAGWVVIQKRVAQYMGA 120 Query: 121 FLILSGIMIGVFSSLDAMLFYAFFEATLIPMFIIVGVWGGDNRVYAAFKLFLYTLLGSLL 180 FLILSGIM+GVFS+LDAMLFYAFFEATLIPMFIIVGVWGGDNRVYAAFKLFLYTLLGSLL Sbjct: 121 FLILSGIMVGVFSALDAMLFYAFFEATLIPMFIIVGVWGGDNRVYAAFKLFLYTLLGSLL 180 Query: 181 MLIALIYLYYVSGGSFEIPTWHQVPLSMMEQKILFFAFLAAFAVKVPMWPVHTWLPDAHV 240 MLIALIYLYYVSGGSFEIPTWHQVPLSM+EQKILFFAFLAAFAVKVPMWPVHTWLPDAHV Sbjct: 181 MLIALIYLYYVSGGSFEIPTWHQVPLSMLEQKILFFAFLAAFAVKVPMWPVHTWLPDAHV 240 Query: 241 QAPTGGSIVLAAIMLKLGAYGFLRFSLPILPDASHALSGFMIFLSLVAVIYIGLVALVQQ 300 QAPTGGSIVLAAIMLKLGAYGFLRFSLPILPDASHALSGFMIFLSLVAVIYIGLVALVQQ Sbjct: 241 QAPTGGSIVLAAIMLKLGAYGFLRFSLPILPDASHALSGFMIFLSLVAVIYIGLVALVQQ 300 Query: 301 DMKKLVAYSSIAHMGFVTLGFFMFNDMAVQGGIVQMISHGFVSGAMFMCIGVLYDQMHTR 360 DMKKLVAYSSIAHMGFVTLGFFMFNDMAVQGGIVQMISHGFVSGAMFMCIGVLYDQMHTR Sbjct: 301 DMKKLVAYSSIAHMGFVTLGFFMFNDMAVQGGIVQMISHGFVSGAMFMCIGVLYDQMHTR 360 Query: 361 EISQYGGVVNKMPRFAFFFILFSLANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATAL 420 EISQYGGVVNKMPRFAFFFILFSLANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATAL Sbjct: 361 EISQYGGVVNKMPRFAFFFILFSLANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATAL 420 Query: 421 ILGAAYSLWLAKRVIFGAVTNHHVAELVDVNGREFFILGLLAIATLVMGIYPGIITDSIQ 480 ILGAAYSLWLAKRVIFGAVTNHHVAELVD+NGREF ILGLLAIATLVMG+YPGIITDSIQ Sbjct: 421 ILGAAYSLWLAKRVIFGAVTNHHVAELVDLNGREFLILGLLAIATLVMGVYPGIITDSIQ 480 Query: 481 TSVTDLLKHVAVSKIN 496 TSVTDLLKHVAVSKIN Sbjct: 481 TSVTDLLKHVAVSKIN 496 >ref|YP_004752258.1| NADH-ubiquinone oxidoreductase subunit M [Collimonas fungivorans Ter331] gb|AEK61435.1| NADH-ubiquinone oxidoreductase chain M [Collimonas fungivorans Ter331] Length = 494 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 384/493 (77%), Positives = 437/493 (88%) Query: 4 STFPILSLAIWVPIVFGILVLALGRDSNPGLTRWLALFGSLVGLVVTFPLIQHFDPLAHG 63 STFP+LSLAIW P+ FGILVLA+GRD NP L RWL+L G+ V VVT PL+ FD HG Sbjct: 2 STFPLLSLAIWCPVAFGILVLAVGRDDNPTLVRWLSLLGAAVSFVVTLPLVCGFDNAFHG 61 Query: 64 YQFVEKTPWIDRFSISYFLGLDGISLWFVPLTAFITVIVVLAGWVVIQKRVAQYMGAFLI 123 QFVEKT WIDRF+++Y+LG+DGISLWFVPLTAFITV+VV++ W VI+K+VAQYMGAFLI Sbjct: 62 MQFVEKTTWIDRFNVNYYLGIDGISLWFVPLTAFITVLVVISAWQVIEKKVAQYMGAFLI 121 Query: 124 LSGIMIGVFSSLDAMLFYAFFEATLIPMFIIVGVWGGDNRVYAAFKLFLYTLLGSLLMLI 183 LSG+MIGVF +LD MLFY FFEATL+PMFIIVGVWGG NRVYAA K FLYTL+GSLLMLI Sbjct: 122 LSGLMIGVFCALDGMLFYVFFEATLVPMFIIVGVWGGANRVYAAIKFFLYTLMGSLLMLI 181 Query: 184 ALIYLYYVSGGSFEIPTWHQVPLSMMEQKILFFAFLAAFAVKVPMWPVHTWLPDAHVQAP 243 AL+YLY SGGSFEI TWHQ+PL+M Q ++F AFL AFAVKVPMWPVHTWLPDAHV+AP Sbjct: 182 ALLYLYIQSGGSFEILTWHQLPLTMTAQILIFLAFLMAFAVKVPMWPVHTWLPDAHVEAP 241 Query: 244 TGGSIVLAAIMLKLGAYGFLRFSLPILPDASHALSGFMIFLSLVAVIYIGLVALVQQDMK 303 TGGS+VLAAIMLKLG YGFLRFSLPI PDASH L+GF+I LSL+AVIYIGLVALVQ DMK Sbjct: 242 TGGSVVLAAIMLKLGGYGFLRFSLPITPDASHYLAGFIITLSLIAVIYIGLVALVQNDMK 301 Query: 304 KLVAYSSIAHMGFVTLGFFMFNDMAVQGGIVQMISHGFVSGAMFMCIGVLYDQMHTREIS 363 KL+AYSSIAHMGFVTLGFF+FND+ +QGGIVQMISHGFVSGAMF+CIGVLYD+MHTR+I+ Sbjct: 302 KLIAYSSIAHMGFVTLGFFIFNDIGLQGGIVQMISHGFVSGAMFLCIGVLYDRMHTRQIA 361 Query: 364 QYGGVVNKMPRFAFFFILFSLANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATALILG 423 +YGGVVN MPRFA F+LFSLAN GLP TSGFVGEFMVILGAVKFNFWIGLLAATALILG Sbjct: 362 EYGGVVNVMPRFAALFVLFSLANSGLPGTSGFVGEFMVILGAVKFNFWIGLLAATALILG 421 Query: 424 AAYSLWLAKRVIFGAVTNHHVAELVDVNGREFFILGLLAIATLVMGIYPGIITDSIQTSV 483 AAYSLWL KRV+FGA+TN HV E++D+N REF +LG+LAIA + MG+YP TD++Q SV Sbjct: 422 AAYSLWLVKRVVFGAITNSHVKEMLDLNKREFVMLGVLAIAVIAMGVYPAPFTDAMQVSV 481 Query: 484 TDLLKHVAVSKIN 496 DLLKHVAV+K+N Sbjct: 482 ADLLKHVAVTKLN 494 >ref|YP_001353164.1| NADH dehydrogenase I chain M [Janthinobacterium sp. Marseille] gb|ABR88792.1| NADH dehydrogenase I chain M [Janthinobacterium sp. Marseille] Length = 496 Score = 673 bits (1736), Expect = 0.0, Method: Composition-based stats. Identities = 386/496 (77%), Positives = 437/496 (88%) Query: 1 MMQSTFPILSLAIWVPIVFGILVLALGRDSNPGLTRWLALFGSLVGLVVTFPLIQHFDPL 60 MMQSTFP+LSLAIW+PI FG+ +LA+GRD+NP R L+LFGS+V +VT P++ FD Sbjct: 1 MMQSTFPLLSLAIWLPIAFGVFILAVGRDTNPNAVRVLSLFGSIVSFLVTLPIVAKFDNA 60 Query: 61 AHGYQFVEKTPWIDRFSISYFLGLDGISLWFVPLTAFITVIVVLAGWVVIQKRVAQYMGA 120 AHG QFVEK WID F+I+Y LG+DG+S+WFV LTAFIT+ VV+A W VI+KRVAQYMGA Sbjct: 61 AHGMQFVEKMKWIDIFNINYSLGVDGLSMWFVILTAFITIFVVIAAWEVIEKRVAQYMGA 120 Query: 121 FLILSGIMIGVFSSLDAMLFYAFFEATLIPMFIIVGVWGGDNRVYAAFKLFLYTLLGSLL 180 FLILSG+MIGVF +LD +LFY FFE+TLIPMFII+GVWGG NRVYA+ K FLYT GSLL Sbjct: 121 FLILSGLMIGVFCALDGLLFYVFFESTLIPMFIIIGVWGGANRVYASIKFFLYTFFGSLL 180 Query: 181 MLIALIYLYYVSGGSFEIPTWHQVPLSMMEQKILFFAFLAAFAVKVPMWPVHTWLPDAHV 240 ML+AL+YLY+ SG SF+I WH +PL M Q ++F AFL AFAVKVPMWPVHTWLPDAHV Sbjct: 181 MLVALLYLYFKSGHSFDILAWHTLPLPMDAQILIFLAFLMAFAVKVPMWPVHTWLPDAHV 240 Query: 241 QAPTGGSIVLAAIMLKLGAYGFLRFSLPILPDASHALSGFMIFLSLVAVIYIGLVALVQQ 300 +APTGGS+VLAAIMLKLGAYGFLRFSLPI PDASH LSGFMI LSL+AVIYIGLVALVQ Sbjct: 241 EAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHYLSGFMITLSLIAVIYIGLVALVQT 300 Query: 301 DMKKLVAYSSIAHMGFVTLGFFMFNDMAVQGGIVQMISHGFVSGAMFMCIGVLYDQMHTR 360 DMKKLVAYSSIAHMGFVTLGFFMFNDMAVQGGIVQMISHGFVSGAMF+CIGVLYD+MHTR Sbjct: 301 DMKKLVAYSSIAHMGFVTLGFFMFNDMAVQGGIVQMISHGFVSGAMFLCIGVLYDRMHTR 360 Query: 361 EISQYGGVVNKMPRFAFFFILFSLANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATAL 420 I+ YGGVVN MP+FA FF+LFS+ N GLPATSGFVGEFMVILGAVKFNFWIGLLAATAL Sbjct: 361 NIADYGGVVNVMPKFAAFFVLFSMGNAGLPATSGFVGEFMVILGAVKFNFWIGLLAATAL 420 Query: 421 ILGAAYSLWLAKRVIFGAVTNHHVAELVDVNGREFFILGLLAIATLVMGIYPGIITDSIQ 480 ILGAAYSLWLAKRVIFGA+TNHHV+E+ D+N REF +LGLLAIA L MG+YP TD++Q Sbjct: 421 ILGAAYSLWLAKRVIFGAITNHHVSEMKDLNKREFLMLGLLAIAVLAMGLYPAPFTDAMQ 480 Query: 481 TSVTDLLKHVAVSKIN 496 TSVTDLLKHVA+SK+N Sbjct: 481 TSVTDLLKHVAISKLN 496 >ref|YP_001100094.1| NADH dehydrogenase I subunit M [Herminiimonas arsenicoxydans] emb|CAL61969.1| NADH-quinone oxidoreductase subunit M [Herminiimonas arsenicoxydans] Length = 496 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 384/495 (77%), Positives = 434/495 (87%) Query: 1 MMQSTFPILSLAIWVPIVFGILVLALGRDSNPGLTRWLALFGSLVGLVVTFPLIQHFDPL 60 MMQSTFP+LSLAIW+PI FGI+V+ALGRD NP + R ++L G++V +VT PLIQ FD Sbjct: 1 MMQSTFPLLSLAIWLPIAFGIVVIALGRDDNPNVARSVSLVGAIVSFLVTLPLIQKFDNA 60 Query: 61 AHGYQFVEKTPWIDRFSISYFLGLDGISLWFVPLTAFITVIVVLAGWVVIQKRVAQYMGA 120 AHG QFVEK WID F+I+Y LG+DG+S+WFV LTAFIT+ VV+AGW VI+KRV QYMGA Sbjct: 61 AHGMQFVEKFKWIDIFNINYSLGVDGLSMWFVVLTAFITIFVVIAGWEVIEKRVGQYMGA 120 Query: 121 FLILSGIMIGVFSSLDAMLFYAFFEATLIPMFIIVGVWGGDNRVYAAFKLFLYTLLGSLL 180 FLILSG+MIGVF +LD +LFY FFE+TLIPMFII+GVWGG NRVYA+ K FLYT GSLL Sbjct: 121 FLILSGLMIGVFCALDGLLFYVFFESTLIPMFIIIGVWGGANRVYASIKFFLYTFFGSLL 180 Query: 181 MLIALIYLYYVSGGSFEIPTWHQVPLSMMEQKILFFAFLAAFAVKVPMWPVHTWLPDAHV 240 ML+AL+YLY+ SG SF+I WH +PL M Q ++F AFL AFAVKVPMWPVHTWLPDAHV Sbjct: 181 MLVALLYLYFKSGHSFDILAWHTLPLPMDAQILIFLAFLMAFAVKVPMWPVHTWLPDAHV 240 Query: 241 QAPTGGSIVLAAIMLKLGAYGFLRFSLPILPDASHALSGFMIFLSLVAVIYIGLVALVQQ 300 +APTGGS+VLAAIMLKLGAYGFLRFSLPI PDASH LSGFMI LSL+AVIYIGLVALVQ+ Sbjct: 241 EAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHYLSGFMITLSLIAVIYIGLVALVQK 300 Query: 301 DMKKLVAYSSIAHMGFVTLGFFMFNDMAVQGGIVQMISHGFVSGAMFMCIGVLYDQMHTR 360 DMKKLVAYSSIAHMGFVTLGFFMFNDMAVQGGI QMISHGFVSGAMF+CIGVLYD+MHTR Sbjct: 301 DMKKLVAYSSIAHMGFVTLGFFMFNDMAVQGGIAQMISHGFVSGAMFLCIGVLYDRMHTR 360 Query: 361 EISQYGGVVNKMPRFAFFFILFSLANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATAL 420 I+ YGGVVN MP+FA FF+LFS+ N GLPATSGFVGEFMVILGAV++NFWIGLLAATAL Sbjct: 361 NIADYGGVVNTMPKFAAFFVLFSMGNAGLPATSGFVGEFMVILGAVQYNFWIGLLAATAL 420 Query: 421 ILGAAYSLWLAKRVIFGAVTNHHVAELVDVNGREFFILGLLAIATLVMGIYPGIITDSIQ 480 ILGAAYSLWLAKRV+FGAV NHHVAEL D+N REF +LGLLAIA L MG+YP TD +Q Sbjct: 421 ILGAAYSLWLAKRVLFGAVANHHVAELKDINKREFLMLGLLAIAVLAMGLYPAPFTDVMQ 480 Query: 481 TSVTDLLKHVAVSKI 495 TSV DLLKHVA+SK+ Sbjct: 481 TSVADLLKHVAISKL 495 >ref|ZP_08274720.1| NADH-ubiquinone oxidoreductase chain M [Oxalobacteraceae bacterium IMCC9480] gb|EGF31794.1| NADH-ubiquinone oxidoreductase chain M [Oxalobacteraceae bacterium IMCC9480] Length = 500 Score = 657 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 382/500 (76%), Positives = 428/500 (85%), Gaps = 4/500 (0%) Query: 1 MMQSTFP----ILSLAIWVPIVFGILVLALGRDSNPGLTRWLALFGSLVGLVVTFPLIQH 56 M+QSTF +LSLAIW PI FG+L+LA GRD NPGL R AL GS+V +VT PLIQ Sbjct: 1 MIQSTFSASFSLLSLAIWCPIAFGVLILAFGRDDNPGLVRIAALIGSVVSFLVTLPLIQR 60 Query: 57 FDPLAHGYQFVEKTPWIDRFSISYFLGLDGISLWFVPLTAFITVIVVLAGWVVIQKRVAQ 116 FD AHG QF EK PWI+RF+I YFLG+DGISLW V LT+FIT+IVV++ W VIQK+VAQ Sbjct: 61 FDNAAHGMQFAEKMPWIERFNIQYFLGIDGISLWLVVLTSFITIIVVISAWEVIQKKVAQ 120 Query: 117 YMGAFLILSGIMIGVFSSLDAMLFYAFFEATLIPMFIIVGVWGGDNRVYAAFKLFLYTLL 176 YMGAFLILSG+M+GVF +LD MLFY FFEATLIPMFII+GVWGG NRVYAA K FLYT Sbjct: 121 YMGAFLILSGLMVGVFCALDGMLFYVFFEATLIPMFIIIGVWGGGNRVYAAIKFFLYTFF 180 Query: 177 GSLLMLIALIYLYYVSGGSFEIPTWHQVPLSMMEQKILFFAFLAAFAVKVPMWPVHTWLP 236 GSLLML+AL+YLY+ SGGSF+I WH +PL + Q LF AFL AFAVKVPMWPVHTWLP Sbjct: 181 GSLLMLVALLYLYFASGGSFDITYWHDLPLPLNVQIPLFLAFLMAFAVKVPMWPVHTWLP 240 Query: 237 DAHVQAPTGGSIVLAAIMLKLGAYGFLRFSLPILPDASHALSGFMIFLSLVAVIYIGLVA 296 DAHV+APTGGS+VLAAIMLKLGAYGFLRFSLPI PDASH L+ MI LSL+AVIYIGLVA Sbjct: 241 DAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHYLAPMMITLSLIAVIYIGLVA 300 Query: 297 LVQQDMKKLVAYSSIAHMGFVTLGFFMFNDMAVQGGIVQMISHGFVSGAMFMCIGVLYDQ 356 LVQ DMKKLVAYSSIAHMGFVTLGFF FNDMAVQGGIVQM+SHGFVS AMF+CIGVLYD+ Sbjct: 301 LVQTDMKKLVAYSSIAHMGFVTLGFFAFNDMAVQGGIVQMVSHGFVSAAMFLCIGVLYDR 360 Query: 357 MHTREISQYGGVVNKMPRFAFFFILFSLANCGLPATSGFVGEFMVILGAVKFNFWIGLLA 416 MHTR I+ YGGVVN MP+FA FF+LFSLANCGLPATSGFVGEFMVILGA+KFNFWIGLLA Sbjct: 361 MHTRAIADYGGVVNTMPKFAAFFVLFSLANCGLPATSGFVGEFMVILGAIKFNFWIGLLA 420 Query: 417 ATALILGAAYSLWLAKRVIFGAVTNHHVAELVDVNGREFFILGLLAIATLVMGIYPGIIT 476 TALI GAAYSLWL KRVIFGAV N VA+L D++ REF +LG+LAIA LVMG+YP IT Sbjct: 421 GTALIFGAAYSLWLVKRVIFGAVANPQVAKLKDLSLREFGMLGVLAIAVLVMGVYPAPIT 480 Query: 477 DSIQTSVTDLLKHVAVSKIN 496 D++QTSV DLL+HV++SK N Sbjct: 481 DAMQTSVADLLQHVSISKAN 500