BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2162.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775196.1| transmembrane NADH dehydrogenase I subunit J... 300 7e-80 ref|YP_004752255.1| NADH-ubiquinone oxidoreductase subunit J [Co... 258 7e-67 ref|YP_001353161.1| NADH dehydrogenase I chain J [Janthinobacter... 250 1e-64 ref|ZP_08275181.1| NADH-ubiquinone oxidoreductase chain J [Oxalo... 245 3e-63 ref|YP_001100097.1| NADH dehydrogenase I subunit J [Herminiimona... 234 9e-60 >ref|YP_003775196.1| transmembrane NADH dehydrogenase I subunit J [Herbaspirillum seropedicae SmR1] gb|ADJ63288.1| transmembrane NADH dehydrogenase I (Chain J) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 219 Score = 300 bits (769), Expect = 7e-80, Method: Composition-based stats. Identities = 189/200 (94%), Positives = 195/200 (97%) Query: 1 MEFKTVLFYVFAVLVVIAAVRVITARNPVHAALFLVLSFFSAAGLWMLLKAEFLAIVLVL 60 MEFKTVLFYVFAV++VIAAVRVITARNPVHAALFLVLSFFSAAG+WMLLKAEFLAIVLVL Sbjct: 1 MEFKTVLFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVL 60 Query: 61 VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLNSFWVYESQ 120 VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLL SFW E+Q Sbjct: 61 VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQ 120 Query: 121 VPAVSDTLGQTKPLGKLIFTEYVYAFEVAAVILLVAIVAAVALTLRKRKDSNYFDPAQAV 180 VPA SDTLGQTKPLGKLIFTEYVYAFE+AAVILLVAIVAAVALTLRKRKDS YFDPA+AV Sbjct: 121 VPAASDTLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAV 180 Query: 181 KVKASDRVRLVSMKAESTRN 200 KVKASDRVRLVSMKAESTRN Sbjct: 181 KVKASDRVRLVSMKAESTRN 200 >ref|YP_004752255.1| NADH-ubiquinone oxidoreductase subunit J [Collimonas fungivorans Ter331] gb|AEK61432.1| NADH-ubiquinone oxidoreductase chain J [Collimonas fungivorans Ter331] Length = 223 Score = 258 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 155/197 (78%), Positives = 180/197 (91%) Query: 1 MEFKTVLFYVFAVLVVIAAVRVITARNPVHAALFLVLSFFSAAGLWMLLKAEFLAIVLVL 60 MEFKT LFY F+V++VIAA+RVITARNPVHAALFLVLSFFSAAG+WMLLKAEFL+IVLVL Sbjct: 1 MEFKTFLFYAFSVVLVIAALRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLSIVLVL 60 Query: 61 VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLNSFWVYESQ 120 VYVGAVMVLFLFVVMMLDIN+DK+REGFWGYFPLAAT+G +IVLEMAAV+ + F E+ Sbjct: 61 VYVGAVMVLFLFVVMMLDINLDKMREGFWGYFPLAATVGTVIVLEMAAVIFHGFQGSEAD 120 Query: 121 VPAVSDTLGQTKPLGKLIFTEYVYAFEVAAVILLVAIVAAVALTLRKRKDSNYFDPAQAV 180 VPA+S +G TK LGKLI+TEYVYAFE+AAVILLVAIVAAVALTLR+RKD+ YF P+ AV Sbjct: 121 VPAISANIGNTKELGKLIYTEYVYAFEIAAVILLVAIVAAVALTLRRRKDTKYFSPSAAV 180 Query: 181 KVKASDRVRLVSMKAES 197 KVK++DRVR+V MK+E+ Sbjct: 181 KVKSTDRVRIVKMKSEA 197 >ref|YP_001353161.1| NADH dehydrogenase I chain J [Janthinobacterium sp. Marseille] gb|ABR88441.1| NADH dehydrogenase I chain J [Janthinobacterium sp. Marseille] Length = 213 Score = 250 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 151/213 (70%), Positives = 176/213 (82%) Query: 1 MEFKTVLFYVFAVLVVIAAVRVITARNPVHAALFLVLSFFSAAGLWMLLKAEFLAIVLVL 60 MEF TVLFYVF+ ++V+AA+RVIT NPVHAALFLVLSF SAA LWMLLKAEFL+IVL+L Sbjct: 1 MEFTTVLFYVFSAILVLAAIRVITESNPVHAALFLVLSFCSAAALWMLLKAEFLSIVLIL 60 Query: 61 VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLNSFWVYESQ 120 VYVGAVMVLFLFVVMM+DI + KLREGFWGY PLAATIGV+IVLEMA VL FW +Q Sbjct: 61 VYVGAVMVLFLFVVMMVDIKLTKLREGFWGYLPLAATIGVVIVLEMALVLFRGFWRSHTQ 120 Query: 121 VPAVSDTLGQTKPLGKLIFTEYVYAFEVAAVILLVAIVAAVALTLRKRKDSNYFDPAQAV 180 VP VS +G K LGKLI+T+Y+YAFE+AAV+LLV ++AAVALT+RKRKDS YF P AV Sbjct: 121 VPEVSANIGNAKELGKLIYTDYLYAFEIAAVLLLVGMIAAVALTMRKRKDSKYFAPGDAV 180 Query: 181 KVKASDRVRLVSMKAESTRNAPAADAAAAAADK 213 +VKASDR+R+V MKA+S R + AA AA K Sbjct: 181 RVKASDRLRVVKMKADSARANGDSPAAPAAEQK 213 >ref|ZP_08275181.1| NADH-ubiquinone oxidoreductase chain J [Oxalobacteraceae bacterium IMCC9480] gb|EGF31352.1| NADH-ubiquinone oxidoreductase chain J [Oxalobacteraceae bacterium IMCC9480] Length = 221 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 154/199 (77%), Positives = 181/199 (90%) Query: 1 MEFKTVLFYVFAVLVVIAAVRVITARNPVHAALFLVLSFFSAAGLWMLLKAEFLAIVLVL 60 MEFKT LFY F+ ++V+AA++VIT RNPVH+ALFLVLSFFSAA +W+LL+AEFLAIVLVL Sbjct: 1 MEFKTALFYAFSAILVMAALKVITDRNPVHSALFLVLSFFSAAAIWLLLQAEFLAIVLVL 60 Query: 61 VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLNSFWVYESQ 120 VYVGAVMVLFLFVVMMLDIN+DK+REGFWGY P AA IGV+IVLEM+AVLL +FW ++Q Sbjct: 61 VYVGAVMVLFLFVVMMLDINVDKMREGFWGYLPFAAFIGVLIVLEMSAVLLQAFWAPDAQ 120 Query: 121 VPAVSDTLGQTKPLGKLIFTEYVYAFEVAAVILLVAIVAAVALTLRKRKDSNYFDPAQAV 180 VP+ + T+G TK LGKLI+TEYV+AFE+AA ILL+AIVAAVALTLRKRKDS YFDPA+AV Sbjct: 121 VPSAASTIGTTKELGKLIYTEYVFAFEIAAAILLLAIVAAVALTLRKRKDSKYFDPAEAV 180 Query: 181 KVKASDRVRLVSMKAESTR 199 KVKASDRVR+V MK+ESTR Sbjct: 181 KVKASDRVRIVKMKSESTR 199 >ref|YP_001100097.1| NADH dehydrogenase I subunit J [Herminiimonas arsenicoxydans] emb|CAL61972.1| NADH-quinone oxidoreductase subunit J (NADH dehydrogenase I subunit J) (NDH-1 subunit J) [Herminiimonas arsenicoxydans] Length = 213 Score = 234 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 148/213 (69%), Positives = 174/213 (81%) Query: 1 MEFKTVLFYVFAVLVVIAAVRVITARNPVHAALFLVLSFFSAAGLWMLLKAEFLAIVLVL 60 MEF TVLFYVF+ ++V AA+RVIT NPVHAALFLVLSF +AA LWMLLKAEFL+IVLVL Sbjct: 1 MEFTTVLFYVFSAILVFAAIRVITDSNPVHAALFLVLSFCTAAALWMLLKAEFLSIVLVL 60 Query: 61 VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLNSFWVYESQ 120 VYVGAVMVLFLFVVMM+DI + +REGFWGY PLAATIGV+IVLEMAAVL FW + Sbjct: 61 VYVGAVMVLFLFVVMMVDIKLSNVREGFWGYLPLAATIGVVIVLEMAAVLFRGFWKAHTH 120 Query: 121 VPAVSDTLGQTKPLGKLIFTEYVYAFEVAAVILLVAIVAAVALTLRKRKDSNYFDPAQAV 180 VP + +G TK LGKLI+T+Y+YAFE+AA++LL+A+VAAVALT+RKRKD+ YF P AV Sbjct: 121 VPEAAAMIGNTKELGKLIYTQYLYAFELAALLLLLAMVAAVALTMRKRKDTKYFAPGDAV 180 Query: 181 KVKASDRVRLVSMKAESTRNAPAADAAAAAADK 213 KVK+ DR+R+V MKAESTR AA AA K Sbjct: 181 KVKSGDRLRVVKMKAESTRANGDQSAAPAAEQK 213