BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2160.p (356 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775194.1| transmembrane NADH dehydrogenase I subunit H... 612 e-173 ref|YP_001790541.1| NADH dehydrogenase (quinone) [Leptothrix cho... 497 e-138 ref|YP_004752253.1| NADH-ubiquinone oxidoreductase subunit H [Co... 494 e-138 ref|YP_001100099.1| NADH dehydrogenase I subunit H [Herminiimona... 481 e-134 ref|ZP_01915802.1| NADH dehydrogenase subunit H [Limnobacter sp.... 480 e-133 >ref|YP_003775194.1| transmembrane NADH dehydrogenase I subunit H [Herbaspirillum seropedicae SmR1] gb|ADJ63286.1| transmembrane NADH dehydrogenase I (chain H) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 356 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 347/356 (97%), Positives = 351/356 (98%) Query: 1 MDHLIAQINNVGPALLGPTLFTLVWTLVKILVVMVPLLVCVAYMTYWERKLIGWMHVRLG 60 MDHLIAQIN VGPA LGPTLFTLVWTLVKILVVMVPLLVCVAYMTYWERKLIGWMHVRLG Sbjct: 1 MDHLIAQINTVGPAYLGPTLFTLVWTLVKILVVMVPLLVCVAYMTYWERKLIGWMHVRLG 60 Query: 61 PNRVGPAGLLQPIADAVKLIFKEISTPSKANKALFYLAPVMTIMPALAAWAVVPFSPEHV 120 PNRVGPAGLLQPIADAVKLIFKEISTPSKANKALFYLAPVMTIMPALAAWAVVPFSPEHV Sbjct: 61 PNRVGPAGLLQPIADAVKLIFKEISTPSKANKALFYLAPVMTIMPALAAWAVVPFSPEHV 120 Query: 121 LANVNAGLLYLMAITSMEVYGIIIAGWASNSKYAFLGAMRASAQMVSYEISMGFCLVVVL 180 LANVNAGLLYLMAITSMEVYGIIIAGWASNSKYAFLGAMRASAQMVSYEISMGFCLVVVL Sbjct: 121 LANVNAGLLYLMAITSMEVYGIIIAGWASNSKYAFLGAMRASAQMVSYEISMGFCLVVVL 180 Query: 181 MVTGSLNMTDIVLAQTKGQFAGMGLNFLSWNWLPLLPIFVIYFVSGVAETNRHPFDVVEG 240 MV+GSLNMTDIV+ QT+G FA MGLNFLSWNWLPLLPIFVIYFVSGVAETNRHPFDVVEG Sbjct: 181 MVSGSLNMTDIVMGQTQGHFASMGLNFLSWNWLPLLPIFVIYFVSGVAETNRHPFDVVEG 240 Query: 241 ESEIVAGHMIEYSGMSFAMFFLAEYAAMILISILTALLFFGGWSAPVSALDFIPGWIWLG 300 ESEIVAGHMIEYSGMSFAMFFLAEYAAMILISILTALLFFGGWSAPVSALDFIPGWIWLG Sbjct: 241 ESEIVAGHMIEYSGMSFAMFFLAEYAAMILISILTALLFFGGWSAPVSALDFIPGWIWLG 300 Query: 301 LKTFFFLSLYVWIRASFPRYRYDQIMRLGWKVFIPLTLVWLVVVSIWIQSPWNIWK 356 LKTFFFLSLYVWIRASFPRYRYDQIMRLGWKVFIPLTLVWLVVV+IWIQSPWNIWK Sbjct: 301 LKTFFFLSLYVWIRASFPRYRYDQIMRLGWKVFIPLTLVWLVVVAIWIQSPWNIWK 356 >ref|YP_001790541.1| NADH dehydrogenase (quinone) [Leptothrix cholodnii SP-6] gb|ACB33776.1| NADH dehydrogenase (quinone) [Leptothrix cholodnii SP-6] Length = 352 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 271/352 (76%), Positives = 310/352 (88%), Gaps = 1/352 (0%) Query: 4 LIAQINNVGPALLGPTLFTLVWTLVKILVVMVPLLVCVAYMTYWERKLIGWMHVRLGPNR 63 ++ + G A LG + +VWTL+KI+VV++PL+ CVAY+T WERK IGW +R GPNR Sbjct: 1 MLDTLQTFGSATLGGA-WPVVWTLLKIVVVLLPLMGCVAYLTLWERKAIGWTQIRPGPNR 59 Query: 64 VGPAGLLQPIADAVKLIFKEISTPSKANKALFYLAPVMTIMPALAAWAVVPFSPEHVLAN 123 VGP GLL PIADAVKL+FKEI TPS ANK LFYL P+MTIMPALAAWAVVPF P+ LAN Sbjct: 60 VGPWGLLTPIADAVKLLFKEIITPSAANKGLFYLGPIMTIMPALAAWAVVPFGPDVALAN 119 Query: 124 VNAGLLYLMAITSMEVYGIIIAGWASNSKYAFLGAMRASAQMVSYEISMGFCLVVVLMVT 183 VNAGLL+LMAITSMEVYG+IIAGWASNSKYAFLGAMRASAQMVSYEI+MGFC VVVLMVT Sbjct: 120 VNAGLLFLMAITSMEVYGVIIAGWASNSKYAFLGAMRASAQMVSYEIAMGFCFVVVLMVT 179 Query: 184 GSLNMTDIVLAQTKGQFAGMGLNFLSWNWLPLLPIFVIYFVSGVAETNRHPFDVVEGESE 243 GSLNMTDIV+ QTKG FA MGLNFLSWNWLPL PIF++YF+SG+AETNRHPFDVVEGE+E Sbjct: 180 GSLNMTDIVVGQTKGNFASMGLNFLSWNWLPLFPIFIVYFISGLAETNRHPFDVVEGEAE 239 Query: 244 IVAGHMIEYSGMSFAMFFLAEYAAMILISILTALLFFGGWSAPVSALDFIPGWIWLGLKT 303 IVAGHMIEYSGMSFAMFFLAEYA MIL+S+L ++F GGW APVS L FIPGWIWLG+KT Sbjct: 240 IVAGHMIEYSGMSFAMFFLAEYANMILVSVLAVIMFLGGWDAPVSFLSFIPGWIWLGIKT 299 Query: 304 FFFLSLYVWIRASFPRYRYDQIMRLGWKVFIPLTLVWLVVVSIWIQSPWNIW 355 F ++++W+RA+FPRYRYDQIMRLGWK+FIP+TLVWLVVV +WIQSPWN+W Sbjct: 300 FCVATMFLWVRATFPRYRYDQIMRLGWKIFIPITLVWLVVVGLWIQSPWNVW 351 >ref|YP_004752253.1| NADH-ubiquinone oxidoreductase subunit H [Collimonas fungivorans Ter331] gb|AEK61430.1| NADH-ubiquinone oxidoreductase chain H [Collimonas fungivorans Ter331] Length = 356 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 280/356 (78%), Positives = 322/356 (90%), Gaps = 1/356 (0%) Query: 1 MDHLIAQINNVGPALLGPTLFTLVWTLVKILVVMVPLLVCVAYMTYWERKLIGWMHVRLG 60 MDH IA IN G G ++ L+W L+KI+VV+VPLL+CVAYMTYWERKLIGWMH+RLG Sbjct: 2 MDHFIAAINATGADWFG-FIWPLIWNLIKIIVVVVPLLLCVAYMTYWERKLIGWMHIRLG 60 Query: 61 PNRVGPAGLLQPIADAVKLIFKEISTPSKANKALFYLAPVMTIMPALAAWAVVPFSPEHV 120 PNRVGPAGLLQPIADA+KL+ KE++ P++ANK LF++AP+MTIMPALAAWAVVPF PE V Sbjct: 61 PNRVGPAGLLQPIADALKLLLKEVTLPARANKVLFFIAPIMTIMPALAAWAVVPFGPETV 120 Query: 121 LANVNAGLLYLMAITSMEVYGIIIAGWASNSKYAFLGAMRASAQMVSYEISMGFCLVVVL 180 LANVNAGLL++MAITSMEVYG+IIAGWASNSKYAFLGAMRASAQMVSYEISMGF LV+VL Sbjct: 121 LANVNAGLLFVMAITSMEVYGVIIAGWASNSKYAFLGAMRASAQMVSYEISMGFALVIVL 180 Query: 181 MVTGSLNMTDIVLAQTKGQFAGMGLNFLSWNWLPLLPIFVIYFVSGVAETNRHPFDVVEG 240 MV+GSLN+TDIV+AQ+KG F G FLSWNWL LLP+F+IYF+SG+AETNRHPFDVVEG Sbjct: 181 MVSGSLNLTDIVMAQSKGYFYDHGAAFLSWNWLSLLPVFLIYFISGIAETNRHPFDVVEG 240 Query: 241 ESEIVAGHMIEYSGMSFAMFFLAEYAAMILISILTALLFFGGWSAPVSALDFIPGWIWLG 300 ESEIVAGHMIEYSGMSFAMFFLAEYA MIL+SILT LLF GGW++P++ LD+IPGWIWLG Sbjct: 241 ESEIVAGHMIEYSGMSFAMFFLAEYANMILVSILTTLLFMGGWASPLAMLDWIPGWIWLG 300 Query: 301 LKTFFFLSLYVWIRASFPRYRYDQIMRLGWKVFIPLTLVWLVVVSIWIQSPWNIWK 356 KTFF LS+++W+RASFPRYRYDQIMRLGWKVFIPL L +LV+V+ WIQSPWNIWK Sbjct: 301 AKTFFMLSVFIWVRASFPRYRYDQIMRLGWKVFIPLILAYLVIVAAWIQSPWNIWK 356 >ref|YP_001100099.1| NADH dehydrogenase I subunit H [Herminiimonas arsenicoxydans] sp|A4G637|NUOH_HERAR RecName: Full=NADH-quinone oxidoreductase subunit H; AltName: Full=NADH dehydrogenase I subunit H; AltName: Full=NDH-1 subunit H emb|CAL61974.1| NADH-quinone oxidoreductase subunit H (NADH dehydrogenase I subunit H) (NDH-1 subunit H) [Herminiimonas arsenicoxydans] Length = 357 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 262/357 (73%), Positives = 316/357 (88%), Gaps = 3/357 (0%) Query: 1 MDHLIAQINNVGPALLGPTLFTLVWTLVKILVVMVPLLVCVAYMTYWERKLIGWMHVRLG 60 MD L+A ++ G + LG + LVWTLVKI+ V++PL+ CVAY+T WERK+IGWMHVR G Sbjct: 1 MDQLLASVHAAGHSFLG-DYWLLVWTLVKIVAVVLPLMGCVAYLTLWERKVIGWMHVRHG 59 Query: 61 PNRVGPAGLLQPIADAVKLIFKEISTPSKANKALFYLAPVMTIMPALAAWAVVPFSPEHV 120 PNR GPAGLLQPIADA+KL+ KEI P+K++KALF +AP+MTIMPALAAWAV+PF PE Sbjct: 60 PNRTGPAGLLQPIADALKLLLKEIVVPAKSSKALFVIAPIMTIMPALAAWAVIPFGPEAA 119 Query: 121 LANVNAGLLYLMAITSMEVYGIIIAGWASNSKYAFLGAMRASAQMVSYEISMGFCLVVVL 180 LANVNAGLL++MAITS+EVYG+I+AGWASNSKYAFLGAMRASAQM+SYEI+MGF LV+VL Sbjct: 120 LANVNAGLLFVMAITSLEVYGVIVAGWASNSKYAFLGAMRASAQMISYEIAMGFVLVIVL 179 Query: 181 MVTGSLNMTDIVLAQTKGQFAGMGLNFLSWNWLPLLPIFVIYFVSGVAETNRHPFDVVEG 240 MV+GSLN+++IV+ QT G+FA MGL FLSWNWLPLLP+FVIY +SG AE NRHPFDVVEG Sbjct: 180 MVSGSLNLSEIVMLQTSGRFADMGLTFLSWNWLPLLPMFVIYIISGTAELNRHPFDVVEG 239 Query: 241 ESEIVAGHMIEYSGMSFAMFFLAEYAAMILISILTALLFFGGWSAPVSALDF--IPGWIW 298 ESEIVAGHM+EYSGMSFAMFFLAEYA MILIS++ L+F GGWS+P+ A+ F IPGWIW Sbjct: 240 ESEIVAGHMVEYSGMSFAMFFLAEYANMILISMMATLMFLGGWSSPIDAMPFTWIPGWIW 299 Query: 299 LGLKTFFFLSLYVWIRASFPRYRYDQIMRLGWKVFIPLTLVWLVVVSIWIQSPWNIW 355 LG+KT F ++L++W RASFPRYRYDQIMRLGWKVFIPLTLV+L++V+IW+++PWNIW Sbjct: 300 LGIKTLFVVTLFIWFRASFPRYRYDQIMRLGWKVFIPLTLVYLLIVAIWMKTPWNIW 356 >ref|ZP_01915802.1| NADH dehydrogenase subunit H [Limnobacter sp. MED105] gb|EDM83047.1| NADH dehydrogenase subunit H [Limnobacter sp. MED105] Length = 355 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 270/355 (76%), Positives = 308/355 (86%), Gaps = 1/355 (0%) Query: 1 MDHLIAQINNVGPALLGPTLFTLVWTLVKILVVMVPLLVCVAYMTYWERKLIGWMHVRLG 60 M + I G LLGP +T VWTL+KIL V +PLL CVAY+TYWERK+IG MH+R+G Sbjct: 1 MSSPVEMITTFGSDLLGPA-WTPVWTLIKILCVTLPLLGCVAYLTYWERKMIGRMHIRMG 59 Query: 61 PNRVGPAGLLQPIADAVKLIFKEISTPSKANKALFYLAPVMTIMPALAAWAVVPFSPEHV 120 P+ VGP GLLQPIADAVK++FKEI P ANK LF +AP+MTIMPALAAWAV+PF PE V Sbjct: 60 PSYVGPMGLLQPIADAVKMMFKEIIVPMNANKGLFIIAPIMTIMPALAAWAVIPFGPETV 119 Query: 121 LANVNAGLLYLMAITSMEVYGIIIAGWASNSKYAFLGAMRASAQMVSYEISMGFCLVVVL 180 LANVNAGLLYLMAITS+EVYG+IIAGWASNSKYAFL AMRASAQMVSYE+++GF LV VL Sbjct: 120 LANVNAGLLYLMAITSLEVYGVIIAGWASNSKYAFLAAMRASAQMVSYELAIGFVLVTVL 179 Query: 181 MVTGSLNMTDIVLAQTKGQFAGMGLNFLSWNWLPLLPIFVIYFVSGVAETNRHPFDVVEG 240 +V GSLNMTDIV+ QT GQFA MGLNFLSWNWLPLLP+ VIY +S VAETNRHPFDVVEG Sbjct: 180 LVAGSLNMTDIVMTQTTGQFADMGLNFLSWNWLPLLPLLVIYMISAVAETNRHPFDVVEG 239 Query: 241 ESEIVAGHMIEYSGMSFAMFFLAEYAAMILISILTALLFFGGWSAPVSALDFIPGWIWLG 300 ESEIVAGHM+EYSGM+FA+FFLAEYA MIL+S L A++FFGGW APV+ L FIPGWIWLG Sbjct: 240 ESEIVAGHMVEYSGMTFAIFFLAEYANMILLSCLAAIMFFGGWDAPVAFLSFIPGWIWLG 299 Query: 301 LKTFFFLSLYVWIRASFPRYRYDQIMRLGWKVFIPLTLVWLVVVSIWIQSPWNIW 355 +KTF +S+++W RASFPRYRYDQIMRLGWKVFIPLTLVWLVVV+ W+Q+PWNIW Sbjct: 300 IKTFLLVSMFIWFRASFPRYRYDQIMRLGWKVFIPLTLVWLVVVAAWMQTPWNIW 354