BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2158.p (467 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775192.1| NADH dehydrogenase I subunit F [Herbaspirill... 868 0.0 ref|YP_002981839.1| NADH-quinone oxidoreductase subunit F [Ralst... 792 0.0 ref|YP_001899775.1| NADH-quinone oxidoreductase subunit F [Ralst... 791 0.0 ref|ZP_00943355.1| NADH-quinone oxidoreductase chain F [Ralstoni... 790 0.0 ref|YP_003745249.1| NADH-quinone oxidoreductase subunit f [Ralst... 790 0.0 >ref|YP_003775192.1| NADH dehydrogenase I subunit F [Herbaspirillum seropedicae SmR1] gb|ADJ63284.1| NADH dehydrogenase I (chain F) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 431 Score = 868 bits (2243), Expect = 0.0, Method: Composition-based stats. Identities = 427/431 (99%), Positives = 429/431 (99%) Query: 37 MTCLHDRHIKPLILADLNGENWHLEDYVKRGGYDSLKRILNEKITPEQVIADLKASGLRG 96 MTCLHDRHIKPLILADLNGENWHLEDYVKRGGY+SLKRILNEKITPEQVIADLKASGLRG Sbjct: 1 MTCLHDRHIKPLILADLNGENWHLEDYVKRGGYESLKRILNEKITPEQVIADLKASGLRG 60 Query: 97 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMIIGGYA 156 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMIIGGYA Sbjct: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMIIGGYA 120 Query: 157 MGITVGYNYIHGEIFAEYERFEEALEEARAAGFLGDNILGTGFSFQLHAHHGYGAYICGE 216 MGITVGYNYIHGEIF+ YERFEEALEEARAAGFLGDNILGTGFSFQLHAHHGYGAYICGE Sbjct: 121 MGITVGYNYIHGEIFSAYERFEEALEEARAAGFLGDNILGTGFSFQLHAHHGYGAYICGE 180 Query: 217 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKP 276 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKP Sbjct: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKP 240 Query: 277 NNGGTKIFSISGDVERPGNYEIPLGTPFSALLELAGGMRGGKKIKAVIPGGSSAPVIRGD 336 NNGGTKIFSISGDVERPGNYEIPLGTPFS LLELAGGMRGGKKIKAVIPGGSSAPVIRGD Sbjct: 241 NNGGTKIFSISGDVERPGNYEIPLGTPFSTLLELAGGMRGGKKIKAVIPGGSSAPVIRGD 300 Query: 337 VMMDTTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTG 396 VMMDTTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTG Sbjct: 301 VMMDTTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTG 360 Query: 397 WMYRMVERIENGHGKMEDLDVLNSVADNIQGRTICALGDAAAMPVRAFVKNFREEFEYHI 456 WMYRMVERIENGHGKMEDLDVLNSVADNIQGRTICALGDAAAMPVRAFVKNFREEFEYHI Sbjct: 361 WMYRMVERIENGHGKMEDLDVLNSVADNIQGRTICALGDAAAMPVRAFVKNFREEFEYHI 420 Query: 457 EHKHCLVPAYI 467 EHKHCLVPAYI Sbjct: 421 EHKHCLVPAYI 431 >ref|YP_002981839.1| NADH-quinone oxidoreductase subunit F [Ralstonia pickettii 12D] ref|ZP_07676590.1| NADH oxidoreductase (quinone), F subunit [Ralstonia sp. 5_7_47FAA] gb|ACS63167.1| NADH-quinone oxidoreductase, F subunit [Ralstonia pickettii 12D] gb|EFP65162.1| NADH oxidoreductase (quinone), F subunit [Ralstonia sp. 5_7_47FAA] Length = 431 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 371/431 (86%), Positives = 404/431 (93%) Query: 37 MTCLHDRHIKPLILADLNGENWHLEDYVKRGGYDSLKRILNEKITPEQVIADLKASGLRG 96 MT LHDRHI+PLILA LNG+NWHLEDYVKRGGY LKRIL EKITPEQVIAD+KASGLRG Sbjct: 1 MTSLHDRHIQPLILAGLNGDNWHLEDYVKRGGYQQLKRILTEKITPEQVIADVKASGLRG 60 Query: 97 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMIIGGYA 156 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGM IGGYA Sbjct: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYA 120 Query: 157 MGITVGYNYIHGEIFAEYERFEEALEEARAAGFLGDNILGTGFSFQLHAHHGYGAYICGE 216 MGITVGYNYIHGEI+ EY+ FE+ALEEARAAGFLGDNILG+GF+FQLHAHHGYGAYICGE Sbjct: 121 MGITVGYNYIHGEIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGE 180 Query: 217 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKP 276 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPF+ +GP Y +MGKP Sbjct: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKP 240 Query: 277 NNGGTKIFSISGDVERPGNYEIPLGTPFSALLELAGGMRGGKKIKAVIPGGSSAPVIRGD 336 NNGG+KIFS+SGDVERPGNYEIPLGTPFS LLELAGGMRGGKK+KAVIPGGSSAPV+ D Sbjct: 241 NNGGSKIFSVSGDVERPGNYEIPLGTPFSKLLELAGGMRGGKKLKAVIPGGSSAPVVPAD 300 Query: 337 VMMDTTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTG 396 +MM + MDYD+IAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTG Sbjct: 301 LMMASDMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTG 360 Query: 397 WMYRMVERIENGHGKMEDLDVLNSVADNIQGRTICALGDAAAMPVRAFVKNFREEFEYHI 456 W+YR+V+RIE+G G+ EDLD+LN+VA+NI GRTICALGDAAAMPVR +K++ +EF YH+ Sbjct: 361 WLYRVVDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV 420 Query: 457 EHKHCLVPAYI 467 EHK C+VP Y+ Sbjct: 421 EHKQCMVPTYL 431 >ref|YP_001899775.1| NADH-quinone oxidoreductase subunit F [Ralstonia pickettii 12J] gb|ACD27343.1| NADH-quinone oxidoreductase, F subunit [Ralstonia pickettii 12J] Length = 431 Score = 791 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 371/431 (86%), Positives = 404/431 (93%) Query: 37 MTCLHDRHIKPLILADLNGENWHLEDYVKRGGYDSLKRILNEKITPEQVIADLKASGLRG 96 MT LHDRHI+PLILA LNG+NWHLEDYVKRGGY LKRIL EKITPEQVIAD+KASGLRG Sbjct: 1 MTSLHDRHIQPLILAGLNGDNWHLEDYVKRGGYQQLKRILTEKITPEQVIADVKASGLRG 60 Query: 97 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMIIGGYA 156 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGM IGGYA Sbjct: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYA 120 Query: 157 MGITVGYNYIHGEIFAEYERFEEALEEARAAGFLGDNILGTGFSFQLHAHHGYGAYICGE 216 MGITVGYNYIHGEI+ EY+ FE+ALEEARAAGFLGDNILG+GF+FQLHAHHGYGAYICGE Sbjct: 121 MGITVGYNYIHGEIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGE 180 Query: 217 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKP 276 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPF+ +GP Y +MGKP Sbjct: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKP 240 Query: 277 NNGGTKIFSISGDVERPGNYEIPLGTPFSALLELAGGMRGGKKIKAVIPGGSSAPVIRGD 336 NNGG+KIFS+SGDVERPGNYEIPLGTPFS LLELAGGMRGGKK+KAVIPGGSSAPV+ D Sbjct: 241 NNGGSKIFSVSGDVERPGNYEIPLGTPFSKLLELAGGMRGGKKLKAVIPGGSSAPVVPAD 300 Query: 337 VMMDTTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTG 396 +MM + MDYD+IAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFY+EESCGQCTPCREGTG Sbjct: 301 LMMASDMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTG 360 Query: 397 WMYRMVERIENGHGKMEDLDVLNSVADNIQGRTICALGDAAAMPVRAFVKNFREEFEYHI 456 W+YR+V+RIE+G G+ EDLD+LN+VA+NI GRTICALGDAAAMPVR +K++ +EF YH+ Sbjct: 361 WLYRVVDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV 420 Query: 457 EHKHCLVPAYI 467 EHK C+VP YI Sbjct: 421 EHKQCMVPTYI 431 >ref|ZP_00943355.1| NADH-quinone oxidoreductase chain F [Ralstonia solanacearum UW551] ref|YP_002259132.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum IPO1609] gb|EAP74177.1| NADH-quinone oxidoreductase chain F [Ralstonia solanacearum UW551] emb|CAQ36045.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum MolK2] emb|CAQ61061.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum IPO1609] gb|AEG68677.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum Po82] Length = 431 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 370/431 (85%), Positives = 404/431 (93%) Query: 37 MTCLHDRHIKPLILADLNGENWHLEDYVKRGGYDSLKRILNEKITPEQVIADLKASGLRG 96 MT LHDRHI+PLILA LNG+NWHLEDYVKRGGY LKRIL EKI+PEQVIAD+KASGLRG Sbjct: 1 MTSLHDRHIQPLILAGLNGDNWHLEDYVKRGGYQQLKRILTEKISPEQVIADVKASGLRG 60 Query: 97 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMIIGGYA 156 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGM IGGYA Sbjct: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYA 120 Query: 157 MGITVGYNYIHGEIFAEYERFEEALEEARAAGFLGDNILGTGFSFQLHAHHGYGAYICGE 216 MGITVGYNYIHGEI+ EY+ FE+ALEEARAAGFLGDNILG+GF+FQLHAHHGYGAYICGE Sbjct: 121 MGITVGYNYIHGEIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGE 180 Query: 217 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKP 276 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPF+ +GP Y +MGKP Sbjct: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKP 240 Query: 277 NNGGTKIFSISGDVERPGNYEIPLGTPFSALLELAGGMRGGKKIKAVIPGGSSAPVIRGD 336 NNGG+KIFS+SGDVERPGNYEIPLGTPFS LLELAGGMRGGKK+KAVIPGGSSAPV+ D Sbjct: 241 NNGGSKIFSVSGDVERPGNYEIPLGTPFSKLLELAGGMRGGKKLKAVIPGGSSAPVVPAD 300 Query: 337 VMMDTTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTG 396 +MM + MDYD+IAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFY+EESCGQCTPCREGTG Sbjct: 301 LMMASDMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTG 360 Query: 397 WMYRMVERIENGHGKMEDLDVLNSVADNIQGRTICALGDAAAMPVRAFVKNFREEFEYHI 456 W+YR+V+RIE+G G+ EDLD+LN+VA+NI GRTICALGDAAAMPVR +K++ +EF YH+ Sbjct: 361 WLYRVVDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV 420 Query: 457 EHKHCLVPAYI 467 EHK C+VP YI Sbjct: 421 EHKQCMVPTYI 431 >ref|YP_003745249.1| NADH-quinone oxidoreductase subunit f [Ralstonia solanacearum CFBP2957] emb|CBJ42628.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum CFBP2957] Length = 431 Score = 790 bits (2039), Expect = 0.0, Method: Composition-based stats. Identities = 370/431 (85%), Positives = 403/431 (93%) Query: 37 MTCLHDRHIKPLILADLNGENWHLEDYVKRGGYDSLKRILNEKITPEQVIADLKASGLRG 96 MT LHDRHI+PLILA LNG+NWHLEDYVKRGGY LKRIL EKI+PEQVIAD+KASGLRG Sbjct: 1 MTSLHDRHIQPLILAGLNGDNWHLEDYVKRGGYQQLKRILTEKISPEQVIADVKASGLRG 60 Query: 97 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMIIGGYA 156 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGM IGGYA Sbjct: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYA 120 Query: 157 MGITVGYNYIHGEIFAEYERFEEALEEARAAGFLGDNILGTGFSFQLHAHHGYGAYICGE 216 MGITVGYNYIHGEI+ EY+ FE+ALEEARAAGFLGDNILGTGF+FQLHAHHGYGAYICGE Sbjct: 121 MGITVGYNYIHGEIWNEYKIFEQALEEARAAGFLGDNILGTGFNFQLHAHHGYGAYICGE 180 Query: 217 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKP 276 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPF+ +GP Y +MGKP Sbjct: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKP 240 Query: 277 NNGGTKIFSISGDVERPGNYEIPLGTPFSALLELAGGMRGGKKIKAVIPGGSSAPVIRGD 336 NNGG+KIFS+SGDVERPGNYEIPLGTPFS LLELAGGMR GKK+KAVIPGGSSAPV+ D Sbjct: 241 NNGGSKIFSVSGDVERPGNYEIPLGTPFSKLLELAGGMRDGKKLKAVIPGGSSAPVVPAD 300 Query: 337 VMMDTTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTG 396 +MM + MDYD+IAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFY+EESCGQCTPCREGTG Sbjct: 301 LMMASDMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTG 360 Query: 397 WMYRMVERIENGHGKMEDLDVLNSVADNIQGRTICALGDAAAMPVRAFVKNFREEFEYHI 456 W+YR+V+RIE+G G+ EDLD+LN+VA+NI GRTICALGDAAAMPVR +K++ +EF YH+ Sbjct: 361 WLYRVVDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV 420 Query: 457 EHKHCLVPAYI 467 EHK C+VP YI Sbjct: 421 EHKQCMVPTYI 431