BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2156.p (417 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775190.1| NADH dehydrogenase I subunit D [Herbaspirill... 862 0.0 ref|YP_001100103.1| NADH dehydrogenase subunit D [Herminiimonas ... 811 0.0 ref|ZP_08276195.1| NADH-ubiquinone oxidoreductase chain D [Oxalo... 810 0.0 ref|YP_004752249.1| NADH-ubiquinone oxidoreductase subunit D [Co... 805 0.0 ref|YP_001353155.1| NADH dehydrogenase subunit D [Janthinobacter... 804 0.0 >ref|YP_003775190.1| NADH dehydrogenase I subunit D [Herbaspirillum seropedicae SmR1] gb|ADJ63282.1| NADH dehydrogenase I (Chain D) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 417 Score = 862 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 411/417 (98%), Positives = 417/417 (100%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV 60 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV Sbjct: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV 60 Query: 61 PYMDRLDYVSMMSNEHGYVLAIERLLGLEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 PYMDRLDYVSMMSNEHGYVLAIER+LG++VPLRAQYIRVMFDEITRLLNHLMWIGAHALD Sbjct: 61 PYMDRLDYVSMMSNEHGYVLAIERMLGIDVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 Query: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA 180 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA Sbjct: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA 180 Query: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF Sbjct: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240 Query: 241 TGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPIGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300 +GPMLRGSGIAWDLRKKQPYEVYDLLDFDIP+GKNGDCYDRYLVRVAEMRQSNRIIKQCV Sbjct: 241 SGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300 Query: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE Sbjct: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360 Query: 361 FGIYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FG+YLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGVYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 >ref|YP_001100103.1| NADH dehydrogenase subunit D [Herminiimonas arsenicoxydans] sp|A4G641|NUOD_HERAR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D emb|CAL61978.1| NADH-ubiquinone oxidoreductase D subunit (NADH dehydrogenase subunit D) [Herminiimonas arsenicoxydans] Length = 417 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 379/417 (90%), Positives = 398/417 (95%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV 60 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHR TEKLAEQKT+LQSV Sbjct: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSV 60 Query: 61 PYMDRLDYVSMMSNEHGYVLAIERLLGLEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 PYMDRLDYVSMM NEH YV++IE++L LEVPLRAQYIRVMFDEITR+LNHLMW+GAHALD Sbjct: 61 PYMDRLDYVSMMCNEHAYVMSIEKMLNLEVPLRAQYIRVMFDEITRILNHLMWLGAHALD 120 Query: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA 180 VGAMGV LYAFREREDL DCYEAVSGARMHAAYYRPGGVYRDLPD+MPQ+KASI+RN KA Sbjct: 121 VGAMGVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDAMPQHKASIIRNAKA 180 Query: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240 I +LNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERA+ MGF Sbjct: 181 INKLNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERAMAMGF 240 Query: 241 TGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPIGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300 TGPMLRGSGI WDLRKKQPYEVYDLLDFDIP+G NGDCYDRYLVRV EMRQSNRIIKQCV Sbjct: 241 TGPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGTNGDCYDRYLVRVEEMRQSNRIIKQCV 300 Query: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360 EWLRNNPG V+TDNHK+APP R DMKSNMEDLIHHFKLFTEGF VP GEAYAAVEHPKGE Sbjct: 301 EWLRNNPGSVMTDNHKVAPPSRVDMKSNMEDLIHHFKLFTEGFHVPVGEAYAAVEHPKGE 360 Query: 361 FGIYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FG+YL+SDGANKPYR+KIRAPGF HLQ L+EMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGVYLISDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417 >ref|ZP_08276195.1| NADH-ubiquinone oxidoreductase chain D [Oxalobacteraceae bacterium IMCC9480] gb|EGF30334.1| NADH-ubiquinone oxidoreductase chain D [Oxalobacteraceae bacterium IMCC9480] Length = 417 Score = 810 bits (2091), Expect = 0.0, Method: Composition-based stats. Identities = 380/417 (91%), Positives = 399/417 (95%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV 60 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHR TEKLAEQKT+LQSV Sbjct: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSV 60 Query: 61 PYMDRLDYVSMMSNEHGYVLAIERLLGLEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 PYMDRLDYVSMM NEHGYV++IE+LLGLEVPLRAQYIRVMFDEITRLLNHL+W+GAHALD Sbjct: 61 PYMDRLDYVSMMCNEHGYVMSIEKLLGLEVPLRAQYIRVMFDEITRLLNHLLWLGAHALD 120 Query: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA 180 VGAMGV LYAFREREDL DCYEAVSGAR+HAAYYRPGGVYRDLP+ MP+Y ASI+RN KA Sbjct: 121 VGAMGVFLYAFREREDLMDCYEAVSGARLHAAYYRPGGVYRDLPEVMPKYSASILRNAKA 180 Query: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240 I +LNENRQGSLLDFIEDFTNRFP YVDEYETLLTDNRIWKQRLVGVGVVSPERAL MGF Sbjct: 181 IGQLNENRQGSLLDFIEDFTNRFPRYVDEYETLLTDNRIWKQRLVGVGVVSPERALAMGF 240 Query: 241 TGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPIGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300 TGPMLRGSGI WDLRKKQPYEVYDLLDFDIP+G NGDCYDRYLVRV EMRQSN+IIKQCV Sbjct: 241 TGPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGVNGDCYDRYLVRVEEMRQSNKIIKQCV 300 Query: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360 EWLRNNPGPV+TDNHK+APP R +MKSNME+LIHHFKLFTEGF VP GEAYAAVEHPKGE Sbjct: 301 EWLRNNPGPVMTDNHKVAPPSRVNMKSNMEELIHHFKLFTEGFHVPPGEAYAAVEHPKGE 360 Query: 361 FGIYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FG+YL+SDGANKPYRLKIRAPGFAHLQ LNEMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGVYLISDGANKPYRLKIRAPGFAHLQGLNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 >ref|YP_004752249.1| NADH-ubiquinone oxidoreductase subunit D [Collimonas fungivorans Ter331] gb|AEK61426.1| NADH-ubiquinone oxidoreductase chain D [Collimonas fungivorans Ter331] Length = 417 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 382/417 (91%), Positives = 395/417 (94%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV 60 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKT+LQSV Sbjct: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTYLQSV 60 Query: 61 PYMDRLDYVSMMSNEHGYVLAIERLLGLEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 PYMDRLDYVSMM NEHGYV+AIERLLGLEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD Sbjct: 61 PYMDRLDYVSMMCNEHGYVMAIERLLGLEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 Query: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA 180 VGAM VLLYAFREREDL DCYEAVSGARMHAAYYRPGGVYRDLPD+MPQ+KAS+VRN KA Sbjct: 121 VGAMAVLLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQHKASLVRNAKA 180 Query: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240 I LNENRQGSLLDFIEDFT RFP YVDEYETLLTDNRIWKQRLVG+GVVSPERA MGF Sbjct: 181 ISALNENRQGSLLDFIEDFTVRFPKYVDEYETLLTDNRIWKQRLVGIGVVSPERAKAMGF 240 Query: 241 TGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPIGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300 TG MLRGSG+ WDLRKKQPYEVYDLLDFDIP+GKNGDCYDRYLVRV EMRQSNRIIKQCV Sbjct: 241 TGAMLRGSGVEWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVEEMRQSNRIIKQCV 300 Query: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360 EWLRNN GPV+T NHK+AP R DMKSNME+LIHHFKLFTEGF VP GEAYAAVEHPKGE Sbjct: 301 EWLRNNSGPVMTTNHKVAPSSRIDMKSNMEELIHHFKLFTEGFHVPPGEAYAAVEHPKGE 360 Query: 361 FGIYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FG+Y+VSDGANKPYRLKIRAPGF HLQ LNEMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGVYIVSDGANKPYRLKIRAPGFPHLQGLNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 >ref|YP_001353155.1| NADH dehydrogenase subunit D [Janthinobacterium sp. Marseille] sp|A6SY08|NUOD_JANMA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName: Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1 subunit D gb|ABR88407.1| NADH dehydrogenase I chain D [Janthinobacterium sp. Marseille] Length = 417 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 374/417 (89%), Positives = 396/417 (94%) Query: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSV 60 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHR TEKLAEQKT+LQSV Sbjct: 1 MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSV 60 Query: 61 PYMDRLDYVSMMSNEHGYVLAIERLLGLEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120 PYMDRLDYVSMM NEH YV+AIE++L +EVPLRAQYIRVMFDEITR+LNHLMW+GAHALD Sbjct: 61 PYMDRLDYVSMMCNEHAYVMAIEKMLNIEVPLRAQYIRVMFDEITRILNHLMWLGAHALD 120 Query: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKA 180 VGAMGV LYAFREREDL DCYEAVSGARMHAAYYRPGGVYRDLPD+MPQ+KASI+RN KA Sbjct: 121 VGAMGVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQHKASIIRNAKA 180 Query: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240 I +LNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVG+GVVSPERA+ MGF Sbjct: 181 ISQLNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGIGVVSPERAMAMGF 240 Query: 241 TGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPIGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300 TG MLRGSG+ WDLRKKQPYEVYDL+DFDIP+G NGDCYDRYLVRV EMRQSNRIIKQCV Sbjct: 241 TGAMLRGSGVEWDLRKKQPYEVYDLMDFDIPVGTNGDCYDRYLVRVEEMRQSNRIIKQCV 300 Query: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360 EWLRNN GPV+TDNHK+APP R MKSNMEDLIHHFKLFTEGF VP GEAYAAVEHPKGE Sbjct: 301 EWLRNNAGPVMTDNHKVAPPSRVGMKSNMEDLIHHFKLFTEGFHVPTGEAYAAVEHPKGE 360 Query: 361 FGIYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417 FG+YL+SDGANKPYR+KIRAPGF HLQ L+EMAKGHMIADAVTIIGTQDIVFGEIDR Sbjct: 361 FGVYLISDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417