BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2154.p (158 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775188.1| NADH dehydrogenase I subunit B [Herbaspirill... 330 3e-89 ref|YP_004752247.1| NADH-ubiquinone oxidoreductase subunit B [Co... 318 2e-85 ref|YP_295185.1| NADH dehydrogenase subunit B [Ralstonia eutroph... 316 8e-85 ref|YP_932901.1| NADH dehydrogenase subunit B [Azoarcus sp. BH72... 315 2e-84 ref|YP_583083.1| NADH dehydrogenase subunit B [Cupriavidus metal... 314 2e-84 >ref|YP_003775188.1| NADH dehydrogenase I subunit B [Herbaspirillum seropedicae SmR1] gb|ADJ63280.1| NADH dehydrogenase I (Chain B) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 158 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 158/158 (100%), Positives = 158/158 (100%) Query: 1 MSIEGVLNEGFVTTSLDKVINWTRTGSLWPMTFGLACCAVEMMHVGASRYDLDRFGAVFR 60 MSIEGVLNEGFVTTSLDKVINWTRTGSLWPMTFGLACCAVEMMHVGASRYDLDRFGAVFR Sbjct: 1 MSIEGVLNEGFVTTSLDKVINWTRTGSLWPMTFGLACCAVEMMHVGASRYDLDRFGAVFR 60 Query: 61 PSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCD 120 PSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCD Sbjct: 61 PSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCD 120 Query: 121 RIVPVDVYVPGCPPTAEALLYGVIQLQNKIKRTNTIAR 158 RIVPVDVYVPGCPPTAEALLYGVIQLQNKIKRTNTIAR Sbjct: 121 RIVPVDVYVPGCPPTAEALLYGVIQLQNKIKRTNTIAR 158 >ref|YP_004752247.1| NADH-ubiquinone oxidoreductase subunit B [Collimonas fungivorans Ter331] gb|AEK61424.1| NADH-ubiquinone oxidoreductase chain B [Collimonas fungivorans Ter331] Length = 158 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 147/158 (93%), Positives = 155/158 (98%) Query: 1 MSIEGVLNEGFVTTSLDKVINWTRTGSLWPMTFGLACCAVEMMHVGASRYDLDRFGAVFR 60 MSIEGVLNEGFVTT+ DK+INWTRTGSLWPMTFGLACCAVEMMH GASRYD+DRFG +FR Sbjct: 1 MSIEGVLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDMDRFGVIFR 60 Query: 61 PSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCD 120 PSPRQSD+MIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCD Sbjct: 61 PSPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCD 120 Query: 121 RIVPVDVYVPGCPPTAEALLYGVIQLQNKIKRTNTIAR 158 RIVPVD+YVPGCPPTAEALLYG+IQLQNKI+RTNTIAR Sbjct: 121 RIVPVDIYVPGCPPTAEALLYGIIQLQNKIRRTNTIAR 158 >ref|YP_295185.1| NADH dehydrogenase subunit B [Ralstonia eutropha JMP134] sp|Q473U2|NUOB_RALEJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gb|AAZ60341.1| NADH dehydrogenase subunit B [Ralstonia eutropha JMP134] Length = 160 Score = 316 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 147/158 (93%), Positives = 154/158 (97%) Query: 1 MSIEGVLNEGFVTTSLDKVINWTRTGSLWPMTFGLACCAVEMMHVGASRYDLDRFGAVFR 60 M+IEGVLNEGFVTT+ DK+INWTRTGSLWPMTFGLACCAVEMMH GA+RYDLDRFG VFR Sbjct: 1 MAIEGVLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFR 60 Query: 61 PSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCD 120 PSPRQSD+MIVAGTLCNKMAPALRKVYDQM EPRWVISMGSCANGGGYYHYSYSVVRGCD Sbjct: 61 PSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCD 120 Query: 121 RIVPVDVYVPGCPPTAEALLYGVIQLQNKIKRTNTIAR 158 RIVPVD+YVPGCPPTAEAL+YGVIQLQNKIKRTNTIAR Sbjct: 121 RIVPVDIYVPGCPPTAEALIYGVIQLQNKIKRTNTIAR 158 >ref|YP_932901.1| NADH dehydrogenase subunit B [Azoarcus sp. BH72] sp|A1K5A9|NUOB1_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName: Full=NADH dehydrogenase I subunit B 1; AltName: Full=NDH-1 subunit B 1 emb|CAL94014.1| putative NADH-ubiquinone oxidoreductase chain B [Azoarcus sp. BH72] Length = 158 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 149/158 (94%), Positives = 151/158 (95%) Query: 1 MSIEGVLNEGFVTTSLDKVINWTRTGSLWPMTFGLACCAVEMMHVGASRYDLDRFGAVFR 60 MSIEGV EGFVTTSLD VINWTRTGSLWPMTFGLACCAVEM+H G SRYDLDRFG VFR Sbjct: 1 MSIEGVFREGFVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCSRYDLDRFGVVFR 60 Query: 61 PSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCD 120 PSPRQSDLMIVAGTLCNKMAPALRKVYDQM EPRWVISMGSCANGGGYYHYSYSVVRGCD Sbjct: 61 PSPRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCD 120 Query: 121 RIVPVDVYVPGCPPTAEALLYGVIQLQNKIKRTNTIAR 158 RIVPVDVYVPGCPPTAEALLYG+IQLQNKIKRTNTIAR Sbjct: 121 RIVPVDVYVPGCPPTAEALLYGIIQLQNKIKRTNTIAR 158 >ref|YP_583083.1| NADH dehydrogenase subunit B [Cupriavidus metallidurans CH34] ref|YP_725560.1| NADH dehydrogenase subunit B [Ralstonia eutropha H16] ref|YP_002005067.1| NADH dehydrogenase subunit b [Cupriavidus taiwanensis LMG 19424] ref|YP_004684831.1| NADH-quinone oxidoreductase subunit B [Cupriavidus necator N-1] sp|Q0KCS9|NUOB_RALEH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B sp|B3R3W8|NUOB_CUPTR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B sp|Q1LPW2|NUOB_RALME RecName: Full=NADH-quinone oxidoreductase subunit B; AltName: Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1 subunit B gb|ABF07814.1| NADH dehydrogenase chain B [Cupriavidus metallidurans CH34] emb|CAJ92192.1| NADH dehydrogenase chain B [Ralstonia eutropha H16] emb|CAQ69000.1| NADH:ubiquinone oxidoreductase complex I, chain B [Cupriavidus taiwanensis LMG 19424] gb|AEI76350.1| NADH-quinone oxidoreductase subunit B [Cupriavidus necator N-1] Length = 160 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 145/158 (91%), Positives = 154/158 (97%) Query: 1 MSIEGVLNEGFVTTSLDKVINWTRTGSLWPMTFGLACCAVEMMHVGASRYDLDRFGAVFR 60 M+IEGVLNEGFVTT+ DK+INWTRTGSLWPMTFGLACCAVEMMH GA+RYD+DRFG +FR Sbjct: 1 MAIEGVLNEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDMDRFGVIFR 60 Query: 61 PSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCD 120 PSPRQSD+MIVAGTLCNKMAPALRKVYDQM EPRWVISMGSCANGGGYYHYSYSVVRGCD Sbjct: 61 PSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCD 120 Query: 121 RIVPVDVYVPGCPPTAEALLYGVIQLQNKIKRTNTIAR 158 RIVPVD+YVPGCPPTAEAL+YGVIQLQNKIKRTNTIAR Sbjct: 121 RIVPVDIYVPGCPPTAEALIYGVIQLQNKIKRTNTIAR 158