BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2153.p         (65 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775187.1| transmembrane NADH dehydrogenase I subunit A...   113   1e-23
ref|YP_004752246.1| NADH ubiquinone oxidoreductase subunit A [Co...   109   2e-22
ref|ZP_08272667.1| NADH ubiquinone oxidoreductase chain A [Oxalo...   105   3e-21
ref|ZP_01770630.1| NADH dehydrogenase I, A subunit [Burkholderia...    97   7e-19
ref|ZP_02462932.1| NADH dehydrogenase subunit A [Burkholderia th...    97   8e-19

>ref|YP_003775187.1| transmembrane NADH dehydrogenase I subunit A [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ63279.1| transmembrane NADH dehydrogenase I (Chain A) oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 119

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/65 (100%), Positives = 65/65 (100%)

Query: 1   MKFDVRYYLIAILFILFDLETAFFFPWGVSMRELGWQGFVTMMVFIAEFVVGFWYIWKKG 60
           MKFDVRYYLIAILFILFDLETAFFFPWGVSMRELGWQGFVTMMVFIAEFVVGFWYIWKKG
Sbjct: 55  MKFDVRYYLIAILFILFDLETAFFFPWGVSMRELGWQGFVTMMVFIAEFVVGFWYIWKKG 114

Query: 61  ALDWE 65
           ALDWE
Sbjct: 115 ALDWE 119


>ref|YP_004752246.1| NADH ubiquinone oxidoreductase subunit A [Collimonas fungivorans
           Ter331]
 gb|AEK61423.1| NADH ubiquinone oxidoreductase chain A [Collimonas fungivorans
           Ter331]
          Length = 119

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/65 (90%), Positives = 64/65 (98%)

Query: 1   MKFDVRYYLIAILFILFDLETAFFFPWGVSMRELGWQGFVTMMVFIAEFVVGFWYIWKKG 60
           MKFDVRYYL+AILFILFDLETAFFFPWGV+MR+LGWQGF+TMMVFIAEF VGFWYIWK+G
Sbjct: 55  MKFDVRYYLVAILFILFDLETAFFFPWGVAMRDLGWQGFITMMVFIAEFAVGFWYIWKRG 114

Query: 61  ALDWE 65
           ALDWE
Sbjct: 115 ALDWE 119


>ref|ZP_08272667.1| NADH ubiquinone oxidoreductase chain A [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33869.1| NADH ubiquinone oxidoreductase chain A [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 119

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/65 (90%), Positives = 63/65 (96%)

Query: 1   MKFDVRYYLIAILFILFDLETAFFFPWGVSMRELGWQGFVTMMVFIAEFVVGFWYIWKKG 60
           MKFDVRYYL+AILFILFDLETAFFFPWGV+MR+LGW GFVTM+VFIAEF VGFWYIWKKG
Sbjct: 55  MKFDVRYYLVAILFILFDLETAFFFPWGVAMRDLGWAGFVTMLVFIAEFAVGFWYIWKKG 114

Query: 61  ALDWE 65
           ALDWE
Sbjct: 115 ALDWE 119


>ref|ZP_01770630.1| NADH dehydrogenase I, A subunit [Burkholderia pseudomallei 305]
 ref|ZP_03791015.1| NADH dehydrogenase I, A subunit [Burkholderia pseudomallei Pakistan
           9]
 gb|EBA44821.1| NADH dehydrogenase I, A subunit [Burkholderia pseudomallei 305]
 gb|EEH28626.1| NADH dehydrogenase I, A subunit [Burkholderia pseudomallei Pakistan
           9]
          Length = 105

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/65 (75%), Positives = 59/65 (90%)

Query: 1   MKFDVRYYLIAILFILFDLETAFFFPWGVSMRELGWQGFVTMMVFIAEFVVGFWYIWKKG 60
           MKFDVRYYL+AILFI+FDLETAF FPWGV++RE+GW GF+ MM+F+ EF++GF YIWKKG
Sbjct: 41  MKFDVRYYLVAILFIIFDLETAFLFPWGVALREIGWPGFIAMMIFLLEFLLGFAYIWKKG 100

Query: 61  ALDWE 65
            LDWE
Sbjct: 101 GLDWE 105


>ref|ZP_02462932.1| NADH dehydrogenase subunit A [Burkholderia thailandensis MSMB43]
          Length = 119

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 50/65 (76%), Positives = 59/65 (90%)

Query: 1   MKFDVRYYLIAILFILFDLETAFFFPWGVSMRELGWQGFVTMMVFIAEFVVGFWYIWKKG 60
           MKFDVRYYL+AILFI+FDLETAF FPWGV++RE+GW GFV MM+F+ EF++GF YIWKKG
Sbjct: 55  MKFDVRYYLVAILFIIFDLETAFLFPWGVALREIGWPGFVAMMIFLLEFLLGFAYIWKKG 114

Query: 61  ALDWE 65
            LDWE
Sbjct: 115 GLDWE 119