BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2147.p (344 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775182.1| allophanate hydrolase subunit 2 [Herbaspiril... 625 e-177 ref|YP_004157290.1| urea amidolyase-like protein [Variovorax par... 361 9e-98 ref|YP_002946243.1| urea amidolyase-like protein [Variovorax par... 351 8e-95 ref|YP_001859122.1| urea amidolyase-like protein [Burkholderia p... 330 1e-88 ref|YP_004754826.1| allophanate hydrolase subunit 2 [Collimonas ... 328 7e-88 >ref|YP_003775182.1| allophanate hydrolase subunit 2 [Herbaspirillum seropedicae SmR1] gb|ADJ63274.1| allophanate hydrolase subunit 2 protein [Herbaspirillum seropedicae SmR1] Length = 344 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 333/344 (96%), Positives = 339/344 (98%) Query: 1 MIDIIQPGMLASVQDMGRTGHRSLGIHPGGALNTLALASANLLVGNPVDAAGLEITMGVA 60 MIDIIQPGMLASVQDMGR GHR LGIHPGGALNTLALASANLLVGNPVDAAGLEITMGVA Sbjct: 1 MIDIIQPGMLASVQDMGRYGHRRLGIHPGGALNTLALASANLLVGNPVDAAGLEITMGVA 60 Query: 61 ELRFTRDTRIALGGDDIGATLDGKPVAACWSIPVRAGSVLKLSLAAADSPEQAPRHSMRT 120 ELRFTR TRIALGGDDIGATLDGKP+AACWSIPVRAGS+LKLSLAAADSPEQAPRHSMRT Sbjct: 61 ELRFTRATRIALGGDDIGATLDGKPIAACWSIPVRAGSILKLSLAAADSPEQAPRHSMRT 120 Query: 121 YLAVAGGIDVPVVLGSRSTDLKAGFGGHQGRALKRGDKLPIGDASAASAAVHGPAFGVRS 180 YLAVAGGIDVP+VLGSRSTDLKAGFGGHQGRALKRGDKLPIGDA AA+AAVHGPAFGVRS Sbjct: 121 YLAVAGGIDVPLVLGSRSTDLKAGFGGHQGRALKRGDKLPIGDAQAAAAAVHGPAFGVRS 180 Query: 181 PRWSGLALRADEHSQHVTLRVLPGPEFDQFSKTAREALWSDTWRVTPNSNRMGYRLEGPE 240 PRWSGLALRADEHSQHVTLRVLP PEFDQFSK+AREALWSDTWRVTPNSNRMGYRLEGPE Sbjct: 181 PRWSGLALRADEHSQHVTLRVLPAPEFDQFSKSAREALWSDTWRVTPNSNRMGYRLEGPE 240 Query: 241 LKRKQGRDMLSHGVVPGVIQVPPSGQPIILMGDAQTTGGYPKIGVIIGADLWKLAQAPLN 300 LKRKQGRDMLSHGVVPGVIQVPPSGQPIILMGDAQTTGGYPKIGVIIGADLWKLAQAPLN Sbjct: 241 LKRKQGRDMLSHGVVPGVIQVPPSGQPIILMGDAQTTGGYPKIGVIIGADLWKLAQAPLN 300 Query: 301 ATLRLEPCELADALAAAEEQQRYLDSIRATVAALDWSRATLYKK 344 ATLRLEPCE+ADALAAAEEQQRYLDSIRATVAALDWSRATLYKK Sbjct: 301 ATLRLEPCEMADALAAAEEQQRYLDSIRATVAALDWSRATLYKK 344 >ref|YP_004157290.1| urea amidolyase-like protein [Variovorax paradoxus EPS] gb|ADU39179.1| urea amidolyase related protein [Variovorax paradoxus EPS] Length = 332 Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats. Identities = 207/336 (61%), Positives = 244/336 (72%), Gaps = 8/336 (2%) Query: 1 MIDIIQPGMLASVQDMGRTGHRSLGIHPGGALNTLALASANLLVGNPVDAAGLEITMGVA 60 MI + +PG+LASVQD+GR GHR LGI PGGAL+ LAL AN LVGN AAGLE+TMG Sbjct: 1 MIVVQKPGLLASVQDLGRHGHRQLGICPGGALDVLALTLANRLVGNVDGAAGLELTMGGC 60 Query: 61 ELRFTRDTRIALGGDDIGATLDGKPVAACWSIPVRAGSVLKLSLAAADSPEQAPRHSMRT 120 E+RF DTRIAL GDD GA LDG P+ CWS+PV AG VLKLS A A ++A +R+ Sbjct: 61 EVRFETDTRIALAGDDFGAQLDGVPLWPCWSVPVAAGQVLKLSGANAAGAKKA---GLRS 117 Query: 121 YLAVAGGIDVPVVLGSRSTDLKAGFGGHQGRALKRGDKLPIGDASAASAAVHGPAFGVRS 180 +LAVAGGIDV VLGSRSTDLKAGFGGH+GRAL++GDKLP+G + +A FG+R Sbjct: 118 WLAVAGGIDVAPVLGSRSTDLKAGFGGHEGRALRKGDKLPLGPSRLNAAQRARKLFGLRG 177 Query: 181 PRWSGLALRADEHSQHVTLRVLPGPEFDQFSKTAREALWSDTWRVTPNSNRMGYRLEGPE 240 P W +E + LRVLPGPEF+ F+ AR+ LW + WR+T SNRMG RL G E Sbjct: 178 PDWG-----PEEADGAIALRVLPGPEFELFTLAARDVLWGERWRITSQSNRMGSRLAGTE 232 Query: 241 LKRKQGRDMLSHGVVPGVIQVPPSGQPIILMGDAQTTGGYPKIGVIIGADLWKLAQAPLN 300 LKRK+ DMLS GV+PG IQVPPSGQPIILMGDAQTTGGYP+IGV+I ADLWKLAQAPLN Sbjct: 233 LKRKRAGDMLSSGVIPGTIQVPPSGQPIILMGDAQTTGGYPRIGVVIRADLWKLAQAPLN 292 Query: 301 ATLRLEPCELADALAAAEEQQRYLDSIRATVAALDW 336 LRL ++A +LAA QQRYL + +A W Sbjct: 293 GKLRLVQVDMAQSLAAWAGQQRYLAQVAQGLAVAGW 328 >ref|YP_002946243.1| urea amidolyase-like protein [Variovorax paradoxus S110] gb|ACS20977.1| urea amidolyase related protein [Variovorax paradoxus S110] Length = 332 Score = 351 bits (901), Expect = 8e-95, Method: Composition-based stats. Identities = 205/338 (60%), Positives = 246/338 (72%), Gaps = 8/338 (2%) Query: 1 MIDIIQPGMLASVQDMGRTGHRSLGIHPGGALNTLALASANLLVGNPVDAAGLEITMGVA 60 M+ + +PGMLASVQD+GR GHR LGI PGGAL+ LAL AN LVGN AAGLE+TMG Sbjct: 1 MMLVHKPGMLASVQDLGRHGHRQLGICPGGALDVLALTLANRLVGNADGAAGLELTMGGC 60 Query: 61 ELRFTRDTRIALGGDDIGATLDGKPVAACWSIPVRAGSVLKLSLAAADSPEQAPRHSMRT 120 E+RF TRIAL GD GA LDG P+ CWS+PV AG LKL+ A A ++A +R+ Sbjct: 61 EIRFETATRIALVGDGFGARLDGAPLWPCWSVPVAAGQTLKLAGANAAGAKKA---GLRS 117 Query: 121 YLAVAGGIDVPVVLGSRSTDLKAGFGGHQGRALKRGDKLPIGDASAASAAVHGPAFGVRS 180 +LAVAGGIDVP VLGSRSTDLKAGFGGHQGRAL++GD+LP+G + +A + FG+R Sbjct: 118 WLAVAGGIDVPPVLGSRSTDLKAGFGGHQGRALRKGDRLPLGATALDAARLARRPFGLRG 177 Query: 181 PRWSGLALRADEHSQHVTLRVLPGPEFDQFSKTAREALWSDTWRVTPNSNRMGYRLEGPE 240 P W +E + LRVLPGPEFDQF+ ++ LWS+ WR+T SNRMG RL G E Sbjct: 178 PDWG-----PEESDSAIALRVLPGPEFDQFTVASQALLWSERWRITAQSNRMGSRLAGAE 232 Query: 241 LKRKQGRDMLSHGVVPGVIQVPPSGQPIILMGDAQTTGGYPKIGVIIGADLWKLAQAPLN 300 LKR++ DMLS GV+PG IQVPPSGQPIILMGDAQTTGGYP+IGV+I ADLWKLAQAPL+ Sbjct: 233 LKRRRSADMLSSGVIPGTIQVPPSGQPIILMGDAQTTGGYPRIGVVIRADLWKLAQAPLD 292 Query: 301 ATLRLEPCELADALAAAEEQQRYLDSIRATVAALDWSR 338 LRL ++A AL A QQRYL + +AA W+R Sbjct: 293 GRLRLVQVDMAAALEAWAGQQRYLAQVAQGLAAAGWTR 330 >ref|YP_001859122.1| urea amidolyase-like protein [Burkholderia phymatum STM815] gb|ACC72076.1| urea amidolyase related protein [Burkholderia phymatum STM815] Length = 350 Score = 330 bits (847), Expect = 1e-88, Method: Composition-based stats. Identities = 186/344 (54%), Positives = 229/344 (66%), Gaps = 21/344 (6%) Query: 1 MIDIIQPGMLASVQDMGRTGHRSLGIHPGGALNTLALASANLLVGNPVDAAGLEITMGVA 60 MID+I+ G+L ++QD+GR G+R LG+ GGAL+ L+L N LVGN DAAGLEIT G Sbjct: 1 MIDVIRAGLLTTIQDLGRHGYRHLGVAMGGALDRLSLEVGNRLVGNRPDAAGLEITFGPT 60 Query: 61 ELRFTRDTRIALGGDDIGATLDGKPVAACWSIPVRAGSVLKLSLAAADSPEQAPRHSMRT 120 LRF R TR+A+ G + GATLDGKPV + WS+PV+AG L L+ A + MR Sbjct: 61 VLRFPRATRVAITGTEFGATLDGKPVYSYWSLPVKAGQELTLN---------AAKRGMRG 111 Query: 121 YLAVAGGIDVPVVLGSRSTDLKAGFGGHQGRALKRGDKLPIG---DASAASAAVHGPAFG 177 Y+ +AGGIDV +LGSRSTDL AGFGG GRAL+ GD+LPIG + + + P FG Sbjct: 112 YVCIAGGIDVLPMLGSRSTDLHAGFGGLGGRALRDGDRLPIGAPRPGAGSGFSPDAPEFG 171 Query: 178 VRSPRWSGLAL-----RADEHSQHVT----LRVLPGPEFDQFSKTAREALWSDTWRVTPN 228 V++P W L R H V +RVLPGPE+D F+ A+EA W+D W VTPN Sbjct: 172 VKAPAWCKFVLVDEPVRRGRHPSGVAWAPPVRVLPGPEYDSFTADAQEAFWNDEWLVTPN 231 Query: 229 SNRMGYRLEGPELKRKQGRDMLSHGVVPGVIQVPPSGQPIILMGDAQTTGGYPKIGVIIG 288 SNRMGYRL G ELKR Q D+LSH V+PG IQVPP+GQPIILM DAQTTGGYPKIG +I Sbjct: 232 SNRMGYRLSGTELKRTQKTDLLSHAVMPGTIQVPPNGQPIILMSDAQTTGGYPKIGAVIH 291 Query: 289 ADLWKLAQAPLNATLRLEPCELADALAAAEEQQRYLDSIRATVA 332 ADLWKLAQ LN +R P +A A E+++YL I A + Sbjct: 292 ADLWKLAQVRLNGAVRFIPTTPYEARQALIEERKYLRQIDAAIG 335 >ref|YP_004754826.1| allophanate hydrolase subunit 2 [Collimonas fungivorans Ter331] gb|AEK64003.1| Allophanate hydrolase subunit 2 [Collimonas fungivorans Ter331] Length = 324 Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 184/339 (54%), Positives = 233/339 (68%), Gaps = 19/339 (5%) Query: 1 MIDIIQPGMLASVQDMGRTGHRSLGIHPGGALNTLALASANLLVGNPVDAAGLEITMGVA 60 MI I++ G + SVQDMGR+G R LGI GAL+ ALA ANLLVGNP DAA +E T+G Sbjct: 1 MIKILRAGRINSVQDMGRSGFRHLGICQSGALDRTALAIANLLVGNPSDAAAIEFTLGPC 60 Query: 61 ELRFTRDTRIALGGDDIGATLDGKPVAACWSIPVRAGSVLKLSLAAADSPEQAPRHSMRT 120 EL FT D RIALGG D ATLD KP+ + WS+ V AG +L+L+ A RH MR Sbjct: 61 ELAFTADGRIALGGADFAATLDDKPLPSWWSVRVCAGQILRLN---------AARHGMRA 111 Query: 121 YLAVAGGIDVPVVLGSRSTDLKAGFGGHQGRALKRGDKLPIGDASAASAAVHGPA-FGVR 179 YLA+AGGID + LGSR+TDL+AGFGGH G AL GD LP G +AA+HG A FGVR Sbjct: 112 YLAIAGGIDAGLQLGSRATDLQAGFGGHGGCALTEGDSLPAGAPDDPAAALHGAASFGVR 171 Query: 180 SPRWSGLALRADEHSQHVTLRVLPGPEFDQFSKTAREALWSDTWRVTPNSNRMGYRLEGP 239 P W ++ ++ + +RV+PGPE++ F++ A++ W+ +W +TP SNRMG+RL GP Sbjct: 172 PPSWY------EDDAETLAIRVIPGPEYELFTQAAQKTFWNSSWTLTPQSNRMGFRLSGP 225 Query: 240 ELKRKQGRDMLSHGVVPGVIQVPPSGQPIILMGDAQTTGGYPKIGVIIGADLWKLAQAPL 299 ELK K+G D+LSHGV+PGVIQVPP+GQPI+LM DAQTTGGYPKIGV+I ADL +LAQ Sbjct: 226 ELKIKKGSDLLSHGVLPGVIQVPPAGQPIVLMADAQTTGGYPKIGVVISADLARLAQLRF 285 Query: 300 NATLRLEPCELADALAAAEEQQRYLDSIRATVAALDWSR 338 N T++ C++ A AA + YL I A+ W R Sbjct: 286 NRTIQFVECDVVQARAALRQDASYLQQIE---TAMHWLR 321