BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2146.p (246 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775181.1| LamB/YcsF family protein [Herbaspirillum ser... 443 e-122 ref|YP_004157289.1| lamb/ycsf family protein [Variovorax paradox... 330 1e-88 ref|YP_002946242.1| LamB/YcsF family protein [Variovorax paradox... 328 5e-88 ref|YP_002981924.1| LamB/YcsF family protein [Ralstonia picketti... 318 3e-85 ref|YP_001899938.1| LamB/YcsF family protein [Ralstonia picketti... 313 1e-83 >ref|YP_003775181.1| LamB/YcsF family protein [Herbaspirillum seropedicae SmR1] gb|ADJ63273.1| LamB/YcsF family protein [Herbaspirillum seropedicae SmR1] Length = 246 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 237/245 (96%), Positives = 244/245 (99%) Query: 1 MHIDLNADLGEGCDTDEQLLTLVSSANIACGWHAGDASTMRRSVRWAIQNHVAIGAHPSF 60 MHIDLNADLGEGCDTDEQLLTLVSSANIACGWHAGDA+TMRRSVRWAIQNHVAIGAHPSF Sbjct: 1 MHIDLNADLGEGCDTDEQLLTLVSSANIACGWHAGDANTMRRSVRWAIQNHVAIGAHPSF 60 Query: 61 PDRENFGRSAMQLPPEDIVSGMLYQLGALDAIVRAEGGRMTHVKPHGALYNQAAKDAVLA 120 PDRENFGRSAMQLPPE+IVSGMLYQLGAL+AIVRAEGGRMTHVKPHGALYNQAAKDAVLA Sbjct: 61 PDRENFGRSAMQLPPEEIVSGMLYQLGALEAIVRAEGGRMTHVKPHGALYNQAAKDAVLA 120 Query: 121 NAICAAIRTFNPELSLYGLAGSELIAAARHADLNAVEEVFADRAYEADGSLVARSKPGAM 180 NAICAAIRTFNPELSLYGLAGSELIAAARHADLNAVEEVFADRAYEADGSLVARSKPGA+ Sbjct: 121 NAICAAIRTFNPELSLYGLAGSELIAAARHADLNAVEEVFADRAYEADGSLVARSKPGAL 180 Query: 181 IENDADAIAQTLMLVKQKKVKAIDGSLVEVNAQTVCLHGDGAHALDFARQIRARLHAEQI 240 I+NDADAIAQTLMLVKQKKVKAIDGS+VEVNAQTVCLHGDGAHALDFARQIRARLH E+I Sbjct: 181 IDNDADAIAQTLMLVKQKKVKAIDGSIVEVNAQTVCLHGDGAHALDFARQIRARLHEERI 240 Query: 241 AVRAA 245 AVRAA Sbjct: 241 AVRAA 245 >ref|YP_004157289.1| lamb/ycsf family protein [Variovorax paradoxus EPS] gb|ADU39178.1| LamB/YcsF family protein [Variovorax paradoxus EPS] Length = 246 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 173/244 (70%), Positives = 199/244 (81%) Query: 1 MHIDLNADLGEGCDTDEQLLTLVSSANIACGWHAGDASTMRRSVRWAIQNHVAIGAHPSF 60 MHIDLNADLGEG +DE LL LVSSANIACGWHAGDA TMR+ VRWAI++ VAIGAHPSF Sbjct: 1 MHIDLNADLGEGAGSDEALLGLVSSANIACGWHAGDAKTMRQCVRWAIEHGVAIGAHPSF 60 Query: 61 PDRENFGRSAMQLPPEDIVSGMLYQLGALDAIVRAEGGRMTHVKPHGALYNQAAKDAVLA 120 PDRENFGRS M LPP++IVS +LYQ+GAL AIV+AEGG++ HVK HG LYNQA K+ LA Sbjct: 61 PDRENFGRSTMHLPPDEIVSNVLYQVGALAAIVKAEGGQLAHVKAHGQLYNQAVKEPELA 120 Query: 121 NAICAAIRTFNPELSLYGLAGSELIAAARHADLNAVEEVFADRAYEADGSLVARSKPGAM 180 +A+C A+R F+P L +GLAGS +I AAR A L VEEVFADR Y DGSLV RS+PGA+ Sbjct: 121 DALCEAVRRFDPTLKFFGLAGSNMIDAARRAGLTPVEEVFADRGYMPDGSLVPRSQPGAL 180 Query: 181 IENDADAIAQTLMLVKQKKVKAIDGSLVEVNAQTVCLHGDGAHALDFARQIRARLHAEQI 240 IE++ +IAQTL V+ +V AIDGS V VNAQTVCLHGDGAHAL FAR+IR RL AE I Sbjct: 181 IESEEQSIAQTLAFVRDHQVTAIDGSTVAVNAQTVCLHGDGAHALAFARRIRERLQAEGI 240 Query: 241 AVRA 244 AVRA Sbjct: 241 AVRA 244 >ref|YP_002946242.1| LamB/YcsF family protein [Variovorax paradoxus S110] gb|ACS20976.1| LamB/YcsF family protein [Variovorax paradoxus S110] Length = 246 Score = 328 bits (841), Expect = 5e-88, Method: Composition-based stats. Identities = 171/244 (70%), Positives = 200/244 (81%) Query: 1 MHIDLNADLGEGCDTDEQLLTLVSSANIACGWHAGDASTMRRSVRWAIQNHVAIGAHPSF 60 M IDLNADLGEG +DE LL LVSSANIACGWHAGDA TMR+ VRWAI + VAIGAHPSF Sbjct: 1 MQIDLNADLGEGAGSDEALLGLVSSANIACGWHAGDAKTMRQCVRWAIAHGVAIGAHPSF 60 Query: 61 PDRENFGRSAMQLPPEDIVSGMLYQLGALDAIVRAEGGRMTHVKPHGALYNQAAKDAVLA 120 PDRENFGRS M LPP++IV+ +LYQ+GAL AI +AEGG+++HVK HG LYNQA K+ LA Sbjct: 61 PDRENFGRSTMHLPPDEIVANVLYQVGALAAIAKAEGGQLSHVKAHGQLYNQAVKEPELA 120 Query: 121 NAICAAIRTFNPELSLYGLAGSELIAAARHADLNAVEEVFADRAYEADGSLVARSKPGAM 180 +A+C A+R F+P L +GLAGS +I AAR A L VEEVFADR Y DGSLV RS+PGA+ Sbjct: 121 DALCEAVRRFDPSLRFFGLAGSGMIDAARRAGLTPVEEVFADRGYMPDGSLVPRSQPGAL 180 Query: 181 IENDADAIAQTLMLVKQKKVKAIDGSLVEVNAQTVCLHGDGAHALDFARQIRARLHAEQI 240 IE++ ++AQTL LV+ +KVKAIDGS+V VNAQTVCLHGDGAHAL FAR+IR RL E I Sbjct: 181 IEDEEQSLAQTLSLVRDRKVKAIDGSIVPVNAQTVCLHGDGAHALAFARRIRERLQQEGI 240 Query: 241 AVRA 244 AVRA Sbjct: 241 AVRA 244 >ref|YP_002981924.1| LamB/YcsF family protein [Ralstonia pickettii 12D] gb|ACS63252.1| LamB/YcsF family protein [Ralstonia pickettii 12D] Length = 256 Score = 318 bits (816), Expect = 3e-85, Method: Composition-based stats. Identities = 162/243 (66%), Positives = 198/243 (81%) Query: 3 IDLNADLGEGCDTDEQLLTLVSSANIACGWHAGDASTMRRSVRWAIQNHVAIGAHPSFPD 62 IDLNADLGEGCDTDE LL LVSSANIACGWHAGD +TMR++V WA++ V+IGAHPSFPD Sbjct: 13 IDLNADLGEGCDTDEALLALVSSANIACGWHAGDVNTMRQTVGWALRQGVSIGAHPSFPD 72 Query: 63 RENFGRSAMQLPPEDIVSGMLYQLGALDAIVRAEGGRMTHVKPHGALYNQAAKDAVLANA 122 RENFGR+ M LPP++I +G+L+Q+G L AIVRA+GGR+ HVK HGALYNQA++D LA A Sbjct: 73 RENFGRTEMHLPPDEIYAGVLFQIGGLSAIVRAQGGRLAHVKAHGALYNQASRDRPLAVA 132 Query: 123 ICAAIRTFNPELSLYGLAGSELIAAARHADLNAVEEVFADRAYEADGSLVARSKPGAMIE 182 I AIR F+P L ++GLAG EL+ AAR L A EEVFADR Y ADGSLV R PGA+I+ Sbjct: 133 IVRAIRDFDPSLVVFGLAGGELVKAARELGLQAKEEVFADRGYNADGSLVKRGTPGALID 192 Query: 183 NDADAIAQTLMLVKQKKVKAIDGSLVEVNAQTVCLHGDGAHALDFARQIRARLHAEQIAV 242 ++ A+ QTL +V++++VKAIDG+ V + A+TVCLHGDGAHAL FAR+IR RL +E IAV Sbjct: 193 SEDAALDQTLTMVREQRVKAIDGTWVPIRAETVCLHGDGAHALAFARRIRERLGSEGIAV 252 Query: 243 RAA 245 RA Sbjct: 253 RAG 255 >ref|YP_001899938.1| LamB/YcsF family protein [Ralstonia pickettii 12J] ref|ZP_07676507.1| LamB/YcsF family protein [Ralstonia sp. 5_7_47FAA] sp|B2U8X6|Y2372_RALPJ RecName: Full=UPF0271 protein Rpic_2372 gb|ACD27506.1| LamB/YcsF family protein [Ralstonia pickettii 12J] gb|EFP65079.1| LamB/YcsF family protein [Ralstonia sp. 5_7_47FAA] Length = 247 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 160/243 (65%), Positives = 197/243 (81%) Query: 3 IDLNADLGEGCDTDEQLLTLVSSANIACGWHAGDASTMRRSVRWAIQNHVAIGAHPSFPD 62 IDLNADLGEGCDTDE LL LVSSANIACGWHAGD +TMR++V WA++ V+IGAHPSFPD Sbjct: 4 IDLNADLGEGCDTDEALLALVSSANIACGWHAGDVNTMRQTVGWALRQGVSIGAHPSFPD 63 Query: 63 RENFGRSAMQLPPEDIVSGMLYQLGALDAIVRAEGGRMTHVKPHGALYNQAAKDAVLANA 122 RENFGR+ M L P++I +G+L+Q+G L AIVRA+GG++ HVK HGALYNQA++D LA A Sbjct: 64 RENFGRTEMHLQPDEIYAGVLFQIGGLSAIVRAQGGKLAHVKAHGALYNQASRDRPLAMA 123 Query: 123 ICAAIRTFNPELSLYGLAGSELIAAARHADLNAVEEVFADRAYEADGSLVARSKPGAMIE 182 I AIR F+P L ++GLAG EL+ AAR L A EEVFADR Y ADGSLV R PGA+I+ Sbjct: 124 IVHAIRDFDPSLVVFGLAGGELVKAARELGLQAKEEVFADRGYNADGSLVKRGTPGALID 183 Query: 183 NDADAIAQTLMLVKQKKVKAIDGSLVEVNAQTVCLHGDGAHALDFARQIRARLHAEQIAV 242 ++ A+ QTL +V++++VKAIDG+ V + A+TVCLHGDGAHAL FAR+IR RL +E IAV Sbjct: 184 SEDAALDQTLTMVREQRVKAIDGTWVPIRAETVCLHGDGAHALAFARRIRERLGSEGIAV 243 Query: 243 RAA 245 RA Sbjct: 244 RAG 246